Wall clock time and date at job start Tue Mar 31 2020 12:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47037 * 2 1 4 4 O 1.42902 * 109.47095 * 240.00105 * 2 1 3 5 5 C 1.53002 * 109.47463 * 120.00167 * 2 1 3 6 6 H 1.09001 * 109.49769 * 299.93531 * 5 2 1 7 7 C 1.53035 * 109.49974 * 179.83931 * 5 2 1 8 8 C 1.53041 * 109.53981 * 178.68415 * 7 5 2 9 9 C 1.52760 * 109.38457 * 61.23656 * 8 7 5 10 10 N 1.46929 * 109.00912 * 305.59260 * 9 8 7 11 11 C 1.34773 * 120.62762 * 233.58019 * 10 9 8 12 12 O 1.21609 * 119.99727 * 173.95895 * 11 10 9 13 13 C 1.47432 * 120.00379 * 353.96397 * 11 10 9 14 14 C 1.39227 * 120.28075 * 314.05481 * 13 11 10 15 15 C 1.38218 * 120.09125 * 179.97438 * 14 13 11 16 16 C 1.38824 * 120.67507 * 0.02921 * 15 14 13 17 17 C 1.37596 * 120.57247 * 359.97438 * 16 15 14 18 18 C 1.40702 * 119.88168 * 359.97438 * 17 16 15 19 19 C 1.40887 * 120.32852 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99935 * 149.90547 * 19 18 17 21 21 C 1.40269 * 119.99984 * 329.91190 * 19 18 17 22 22 N 1.30629 * 120.00380 * 344.93023 * 21 19 18 23 23 Si 1.86801 * 119.99995 * 164.93017 * 21 19 18 24 24 H 1.48503 * 109.46980 * 90.00012 * 23 21 19 25 25 H 1.48501 * 109.47210 * 209.99681 * 23 21 19 26 26 H 1.48502 * 109.47467 * 330.00002 * 23 21 19 27 27 C 1.46928 * 118.73651 * 53.30644 * 10 9 8 28 28 H 1.09001 * 109.46780 * 299.99260 * 1 2 3 29 29 H 1.08997 * 109.47298 * 59.99663 * 1 2 3 30 30 H 1.09004 * 109.46943 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47199 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47352 * 300.00304 * 3 2 1 33 33 H 1.09002 * 109.47347 * 60.00269 * 3 2 1 34 34 H 0.96698 * 114.00265 * 179.97438 * 4 2 1 35 35 H 1.09006 * 109.45717 * 298.70699 * 7 5 2 36 36 H 1.08994 * 109.46201 * 58.67253 * 7 5 2 37 37 H 1.08995 * 109.49723 * 181.31444 * 8 7 5 38 38 H 1.09000 * 109.49472 * 301.37696 * 8 7 5 39 39 H 1.08995 * 109.50916 * 185.70568 * 9 8 7 40 40 H 1.09002 * 109.42735 * 65.42435 * 9 8 7 41 41 H 1.08004 * 119.95447 * 359.97438 * 14 13 11 42 42 H 1.08004 * 119.65804 * 180.02562 * 15 14 13 43 43 H 1.08001 * 119.71169 * 179.72350 * 16 15 14 44 44 H 1.08004 * 120.05511 * 179.97438 * 17 16 15 45 45 H 0.96998 * 120.00036 * 180.02562 * 22 21 19 46 46 H 1.08997 * 109.58460 * 66.43449 * 27 10 9 47 47 H 1.09004 * 109.57972 * 186.85337 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2492 6 1 1.6780 -0.2071 2.1395 7 6 3.5704 -0.7251 1.2478 8 6 4.0818 -1.4175 2.5132 9 6 3.5943 -2.8651 2.5313 10 7 2.1325 -2.8797 2.3837 11 6 1.3589 -3.5310 3.2746 12 8 0.1478 -3.4451 3.2055 13 6 1.9808 -4.3475 4.3330 14 6 3.0156 -5.2265 4.0248 15 6 3.5961 -5.9897 5.0202 16 6 3.1582 -5.8920 6.3339 17 6 2.1376 -5.0324 6.6693 18 6 1.5303 -4.2434 5.6751 19 6 0.4848 -3.3597 6.0081 20 1 0.3437 -2.4519 5.4403 21 6 -0.3726 -3.6588 7.0771 22 7 -0.4009 -4.8667 7.5735 23 14 -1.4741 -2.3297 7.7910 24 1 -2.7744 -2.3264 7.0738 25 1 -1.7049 -2.5997 9.2329 26 1 -0.8187 -1.0063 7.6339 27 6 1.5298 -2.1657 1.2498 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 2.9703 -0.7115 -1.2332 35 1 3.9314 -1.2607 0.3696 36 1 3.9361 0.3013 1.2227 37 1 5.1715 -1.3992 2.5228 38 1 3.7014 -0.8966 3.3918 39 1 3.8707 -3.3305 3.4773 40 1 4.0503 -3.4116 1.7058 41 1 3.3651 -5.3121 3.0064 42 1 4.3987 -6.6690 4.7733 43 1 3.6200 -6.4990 7.0986 44 1 1.8032 -4.9633 7.6940 45 1 -0.9941 -5.0736 8.3126 46 1 1.8141 -2.6541 0.3177 47 1 0.4445 -2.1698 1.3506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832520314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:40 Heat of formation + Delta-G solvation = -98.002328 kcal Electronic energy + Delta-G solvation = -27854.402626 eV Core-core repulsion = 24193.233206 eV Total energy + Delta-G solvation = -3661.169420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.46876 -40.02306 -38.59577 -37.34833 -35.63305 -34.07594 -33.09267 -32.06679 -31.61720 -30.43651 -28.61333 -27.43230 -26.08587 -24.65841 -23.52721 -22.76090 -22.07887 -20.80756 -20.09665 -19.11335 -18.19913 -17.43827 -17.32683 -16.92743 -16.21526 -16.05576 -15.74847 -15.59034 -15.51931 -15.12891 -14.75876 -14.54523 -14.42750 -14.18087 -13.81471 -13.72430 -13.50826 -13.34138 -13.18496 -12.97664 -12.92726 -12.86285 -12.70824 -12.57766 -12.47737 -12.23376 -12.00311 -11.82067 -11.75468 -11.73578 -11.45674 -11.14063 -11.11960 -10.83499 -10.43180 -9.53993 -9.31911 -9.27994 -8.72630 -6.40413 0.63448 0.99365 1.29115 1.41279 1.46474 2.05165 2.15601 2.30214 2.69560 3.32316 3.59599 3.64574 3.73101 3.87902 4.05547 4.07295 4.16495 4.25863 4.35996 4.40273 4.40555 4.58202 4.62330 4.68134 4.72059 4.82799 4.84551 4.90177 4.92005 4.95726 5.00791 5.06772 5.10675 5.13195 5.15532 5.20798 5.28612 5.33272 5.40726 5.45279 5.57311 5.77645 5.85658 5.99285 6.09038 6.27956 6.52254 6.66126 6.85252 6.90755 6.93633 7.51236 8.25398 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013567 B = 0.004600 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.388097 B = 6085.850157 C = 7430.191905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.142 3.858 3 C -0.172 4.172 4 O -0.568 6.568 5 C -0.120 4.120 6 H 0.058 0.942 7 C -0.111 4.111 8 C -0.130 4.130 9 C 0.099 3.901 10 N -0.614 5.614 11 C 0.572 3.428 12 O -0.591 6.591 13 C -0.270 4.270 14 C -0.054 4.054 15 C -0.235 4.235 16 C -0.091 4.091 17 C -0.182 4.182 18 C 0.118 3.882 19 C -0.468 4.468 20 H 0.055 0.945 21 C 0.038 3.962 22 N -0.817 5.817 23 Si 0.973 3.027 24 H -0.272 1.272 25 H -0.252 1.252 26 H -0.260 1.260 27 C 0.121 3.879 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.387 0.613 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.043 0.957 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.123 0.877 42 H 0.132 0.868 43 H 0.120 0.880 44 H 0.100 0.900 45 H 0.291 0.709 46 H 0.077 0.923 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.776 9.754 -11.477 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.101 3.899 3 C -0.230 4.230 4 O -0.377 6.377 5 C -0.139 4.139 6 H 0.076 0.924 7 C -0.148 4.148 8 C -0.168 4.168 9 C -0.023 4.023 10 N -0.347 5.347 11 C 0.365 3.635 12 O -0.472 6.472 13 C -0.275 4.275 14 C -0.072 4.072 15 C -0.254 4.254 16 C -0.109 4.109 17 C -0.201 4.201 18 C 0.114 3.886 19 C -0.497 4.497 20 H 0.073 0.927 21 C -0.177 4.177 22 N -0.442 5.442 23 Si 0.794 3.206 24 H -0.197 1.197 25 H -0.176 1.176 26 H -0.184 1.184 27 C -0.001 4.001 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.237 0.763 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.141 0.859 42 H 0.150 0.850 43 H 0.138 0.862 44 H 0.118 0.882 45 H 0.102 0.898 46 H 0.096 0.904 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.396 9.580 -11.451 17.640 hybrid contribution -0.624 0.230 0.842 1.073 sum 8.772 9.810 -10.609 16.904 Atomic orbital electron populations 1.21850 0.93945 1.02078 1.02646 1.21025 0.93983 0.91472 0.83409 1.22465 1.02780 0.94803 1.02915 1.86539 1.28018 1.79685 1.43419 1.22115 0.98169 0.94793 0.98852 0.92361 1.21654 0.92461 1.02291 0.98385 1.21826 1.02231 0.94464 0.98248 1.21994 0.78309 0.98603 1.03408 1.48131 1.07917 1.52082 1.26550 1.18637 0.85808 0.78478 0.80599 1.90636 1.16596 1.65525 1.74459 1.19729 1.06622 1.08156 0.92978 1.20945 0.93170 0.94404 0.98726 1.20749 1.05715 1.06102 0.92806 1.21141 0.95844 0.96974 0.96939 1.21218 0.98446 1.01866 0.98562 1.17717 0.90357 0.90363 0.90134 1.19556 1.11490 1.06268 1.12404 0.92650 1.26680 0.98200 0.97861 0.95003 1.69740 1.33042 1.20338 1.21103 0.85353 0.78011 0.78856 0.78398 1.19711 1.17557 1.18400 1.21532 0.98007 0.92382 0.88166 0.91353 0.90964 0.93556 0.90064 0.91328 0.91763 0.76266 0.89490 0.89080 0.87713 0.93820 0.90010 0.89621 0.85883 0.84975 0.86155 0.88154 0.89813 0.90441 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.50 71.98 0.61 -2.89 16 2 C 0.14 2.87 0.84 -10.79 -0.01 2.86 16 3 C -0.17 -2.58 8.47 71.98 0.61 -1.97 16 4 O -0.57 -10.98 12.18 -148.98 -1.82 -12.79 16 5 C -0.12 -2.89 1.76 -10.72 -0.02 -2.90 16 6 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 7 C -0.11 -1.90 4.51 30.62 0.14 -1.77 16 8 C -0.13 -2.81 6.06 30.53 0.19 -2.63 16 9 C 0.10 2.78 5.10 86.22 0.44 3.22 16 10 N -0.61 -22.75 2.98 -823.61 -2.45 -25.21 16 11 C 0.57 28.21 6.62 86.67 0.57 28.79 16 12 O -0.59 -34.37 15.04 -4.06 -0.06 -34.43 16 13 C -0.27 -13.56 4.96 -19.70 -0.10 -13.66 16 14 C -0.05 -2.24 7.48 22.50 0.17 -2.07 16 15 C -0.23 -9.26 10.03 22.41 0.22 -9.03 16 16 C -0.09 -3.94 10.01 22.26 0.22 -3.72 16 17 C -0.18 -9.43 8.65 22.72 0.20 -9.23 16 18 C 0.12 6.57 5.53 -21.11 -0.12 6.45 16 19 C -0.47 -27.35 7.79 23.41 0.18 -27.17 16 20 H 0.06 3.38 7.02 -2.91 -0.02 3.36 16 21 C 0.04 2.08 5.16 85.37 0.44 2.52 16 22 N -0.82 -44.52 11.18 21.88 0.24 -44.27 16 23 Si 0.97 41.65 29.59 68.60 2.03 43.68 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 25 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 26 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 27 C 0.12 3.91 5.12 86.36 0.44 4.35 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.29 6.56 -2.39 -0.02 1.27 16 31 H 0.08 0.90 6.41 -2.39 -0.02 0.88 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.39 4.53 7.36 -74.06 -0.55 3.98 16 35 H 0.09 1.13 6.84 -2.38 -0.02 1.11 16 36 H 0.09 1.17 6.37 -2.39 -0.02 1.16 16 37 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 2.65 5.05 -2.39 -0.01 2.64 16 40 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.12 4.29 7.14 -2.91 -0.02 4.27 16 42 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 43 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 44 H 0.10 5.42 6.49 -2.91 -0.02 5.41 16 45 H 0.29 14.24 8.29 -92.71 -0.77 13.47 16 46 H 0.08 2.26 7.54 -2.39 -0.02 2.25 16 47 H 0.06 2.20 5.61 -2.39 -0.01 2.19 16 Total: -1.00 -72.82 360.80 2.58 -70.24 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: 0.44 Total: 31.63 kcal Atomic # 6 Polarization: -33.04 SS G_CDS: 4.19 Total: -28.85 kcal Atomic # 7 Polarization: -67.27 SS G_CDS: -2.21 Total: -69.48 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -1.88 Total: -47.23 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -72.82 2.58 -70.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832520314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.761 kcal (2) G-P(sol) polarization free energy of solvation -72.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds