Wall clock time and date at job start Tue Mar 31 2020 12:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46866 * 2 1 4 4 C 1.52990 * 109.47006 * 120.00079 * 2 1 3 5 5 H 1.09004 * 115.56121 * 274.30675 * 4 2 1 6 6 C 1.53003 * 117.50108 * 128.62645 * 4 2 1 7 7 C 1.53002 * 117.50413 * 59.99814 * 4 2 1 8 8 H 1.09000 * 117.49445 * 359.97438 * 7 4 2 9 9 C 1.52999 * 117.50271 * 214.97586 * 7 4 2 10 10 N 1.46502 * 109.46939 * 175.00098 * 9 7 4 11 11 C 1.34776 * 119.99455 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00295 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99601 * 180.27257 * 11 10 9 14 14 C 1.50702 * 109.46932 * 179.72027 * 13 11 10 15 15 C 1.38302 * 119.93535 * 269.72779 * 14 13 11 16 16 C 1.38095 * 120.06711 * 179.72901 * 15 14 13 17 17 C 1.38873 * 119.93053 * 0.54398 * 16 15 14 18 18 O 1.35761 * 120.06814 * 179.75119 * 17 16 15 19 19 C 1.34825 * 117.00140 * 174.44524 * 18 17 16 20 20 H 1.08000 * 119.99720 * 5.05685 * 19 18 17 21 21 C 1.38655 * 120.00141 * 185.05682 * 19 18 17 22 22 N 1.31561 * 119.99628 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00161 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47140 * 59.99791 * 23 21 19 25 25 H 1.48495 * 109.47005 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47007 * 300.00025 * 23 21 19 27 27 C 1.38881 * 119.86620 * 359.73163 * 17 16 15 28 28 C 1.38096 * 119.92462 * 359.97438 * 27 17 16 29 29 H 1.09003 * 109.47313 * 299.99837 * 1 2 3 30 30 H 1.08997 * 109.47550 * 60.00302 * 1 2 3 31 31 H 1.09007 * 109.47113 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46710 * 239.99808 * 2 1 3 33 33 H 1.08999 * 109.47217 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47159 * 300.00023 * 3 2 1 35 35 H 1.09002 * 109.47532 * 59.99865 * 3 2 1 36 36 H 1.08999 * 117.50190 * 145.02027 * 6 4 2 37 37 H 1.09003 * 117.49731 * 359.97438 * 6 4 2 38 38 H 1.09004 * 109.47006 * 55.00193 * 9 7 4 39 39 H 1.08996 * 109.47322 * 295.00609 * 9 7 4 40 40 H 0.96998 * 120.00153 * 359.97438 * 10 9 7 41 41 H 1.08998 * 109.47087 * 299.72435 * 13 11 10 42 42 H 1.09002 * 109.46658 * 59.72565 * 13 11 10 43 43 H 1.07998 * 119.96040 * 0.02562 * 15 14 13 44 44 H 1.08005 * 120.03195 * 180.27512 * 16 15 14 45 45 H 0.96998 * 119.99349 * 180.02562 * 22 21 19 46 46 H 1.08004 * 120.03253 * 180.02562 * 27 17 16 47 47 H 1.07999 * 119.96076 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 2.1271 -0.1061 2.1448 6 6 3.0742 -1.8313 1.0513 7 6 1.6357 -2.1852 1.4343 8 1 1.0060 -2.6344 0.6663 9 6 1.3847 -2.6737 2.8623 10 7 0.8963 -4.0545 2.8273 11 6 0.6056 -4.6957 3.9766 12 8 0.7488 -4.1298 5.0397 13 6 0.1090 -6.1181 3.9410 14 6 -0.1335 -6.6009 5.3478 15 6 0.8835 -7.2229 6.0490 16 6 0.6659 -7.6613 7.3403 17 6 -0.5789 -7.4872 7.9307 18 8 -0.7974 -7.9217 9.1982 19 6 -1.9889 -7.6196 9.7520 20 1 -2.7490 -7.1278 9.1631 21 6 -2.2385 -7.9402 11.0777 22 7 -1.3124 -8.5388 11.7952 23 14 -3.8891 -7.5211 11.8452 24 1 -4.9717 -8.2116 11.0991 25 1 -3.9035 -7.9658 13.2619 26 1 -4.1047 -6.0530 11.7845 27 6 -1.5999 -6.8673 7.2220 28 6 -1.3742 -6.4257 5.9332 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.8416 -1.9465 1.8168 37 1 3.3910 -2.0480 0.0311 38 1 0.6394 -2.0366 3.3385 39 1 2.3145 -2.6314 3.4295 40 1 0.7814 -4.5069 1.9771 41 1 -0.8217 -6.1639 3.3755 42 1 0.8562 -6.7518 3.4631 43 1 1.8502 -7.3615 5.5878 44 1 1.4619 -8.1430 7.8889 45 1 -1.4872 -8.7635 12.7225 46 1 -2.5689 -6.7302 7.6787 47 1 -2.1676 -5.9432 5.3817 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836915961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:36 Heat of formation + Delta-G solvation = -35.792707 kcal Electronic energy + Delta-G solvation = -24910.301304 eV Core-core repulsion = 21251.829495 eV Total energy + Delta-G solvation = -3658.471808 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.88010 -39.03222 -38.52785 -36.46186 -34.94738 -33.35393 -32.40553 -31.31356 -30.08604 -27.87665 -27.51414 -25.95824 -24.88347 -23.31158 -21.90785 -21.38104 -21.13080 -20.31314 -19.72589 -17.91710 -17.07753 -16.80852 -16.33129 -15.57756 -15.33721 -15.01476 -14.55641 -14.50140 -14.17332 -14.11251 -13.70439 -13.59924 -13.49146 -13.41621 -13.22044 -12.78619 -12.63720 -12.57923 -12.37894 -11.79862 -11.76185 -11.69868 -11.52784 -11.44369 -11.20433 -11.06938 -10.79013 -10.70223 -10.58526 -10.39535 -10.38943 -10.33888 -9.61762 -9.26774 -9.05644 -8.76052 -8.08355 -7.09775 -6.39001 -3.97516 2.31400 2.32908 2.83524 3.10161 3.16881 3.19429 3.21101 3.44862 4.01997 4.12272 4.37699 4.45859 4.59509 4.65073 4.80023 4.88399 4.94648 5.05008 5.14466 5.17481 5.26105 5.30101 5.31562 5.38553 5.43013 5.45271 5.48668 5.51136 5.58246 5.66165 5.72076 5.75474 5.79436 5.83587 5.89115 5.91578 6.00422 6.28108 6.41458 6.48497 6.77065 6.98250 7.11663 7.30349 7.43670 7.49867 7.53385 7.90837 8.06320 8.38680 9.06639 9.77674 10.79136 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023805 B = 0.001929 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.956132 B =14509.533370 C =15071.079946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.066 4.066 3 C -0.145 4.145 4 C -0.136 4.136 5 H 0.107 0.893 6 C -0.172 4.172 7 C -0.163 4.163 8 H 0.109 0.891 9 C 0.151 3.849 10 N -0.739 5.739 11 C 0.507 3.493 12 O -0.521 6.521 13 C -0.079 4.079 14 C -0.169 4.169 15 C -0.060 4.060 16 C -0.191 4.191 17 C 0.156 3.844 18 O -0.179 6.179 19 C -0.391 4.391 20 H 0.091 0.909 21 C 0.038 3.962 22 N -0.864 5.864 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.232 4.232 28 C -0.057 4.057 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.398 0.602 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.116 0.884 45 H 0.270 0.730 46 H 0.126 0.874 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.025 13.500 -25.821 29.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 C -0.203 4.203 4 C -0.155 4.155 5 H 0.125 0.875 6 C -0.209 4.209 7 C -0.181 4.181 8 H 0.127 0.873 9 C 0.027 3.973 10 N -0.393 5.393 11 C 0.294 3.706 12 O -0.395 6.395 13 C -0.119 4.119 14 C -0.171 4.171 15 C -0.078 4.078 16 C -0.211 4.211 17 C 0.103 3.897 18 O -0.082 6.082 19 C -0.467 4.467 20 H 0.108 0.892 21 C -0.166 4.166 22 N -0.499 5.499 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.252 4.252 28 C -0.075 4.075 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.231 0.769 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.126 0.874 44 H 0.134 0.866 45 H 0.080 0.920 46 H 0.144 0.856 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.292 13.700 -24.594 28.646 hybrid contribution -0.887 0.092 -0.069 0.894 sum 4.405 13.791 -24.663 28.599 Atomic orbital electron populations 1.21830 0.94826 1.01956 1.01787 1.20710 0.95796 0.96021 0.95921 1.21810 1.01098 0.95505 1.01848 1.22487 1.02857 0.90156 0.99980 0.87503 1.23247 0.92088 1.02778 1.02755 1.22537 0.98968 0.98908 0.97678 0.87254 1.20808 0.99711 0.82738 0.94010 1.46070 1.69397 1.14622 1.09192 1.21069 0.77174 0.88978 0.83369 1.90750 1.50901 1.68048 1.29790 1.20406 1.02280 0.92066 0.97182 1.18639 0.95279 1.08010 0.95141 1.20400 0.97031 0.96919 0.93491 1.20152 0.95795 1.09119 0.96002 1.19381 0.92970 0.91254 0.86142 1.83976 1.36753 1.65572 1.21919 1.21277 0.89791 1.40525 0.95123 0.89159 1.25281 0.99532 0.96562 0.95181 1.70036 1.33224 1.37834 1.08809 0.85787 0.80293 0.79097 0.78281 1.19548 1.20311 1.19519 1.21104 1.00482 1.07789 0.95799 1.20507 0.95552 0.97036 0.94432 0.92455 0.92774 0.92565 0.91254 0.92571 0.92663 0.92511 0.88541 0.88698 0.91361 0.91561 0.76850 0.89060 0.89002 0.87400 0.86557 0.92047 0.85603 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.03 37.16 0.34 -0.50 16 2 C -0.07 -0.37 3.07 -90.63 -0.28 -0.65 16 3 C -0.15 -0.76 9.17 37.15 0.34 -0.42 16 4 C -0.14 -0.87 4.87 -90.62 -0.44 -1.31 16 5 H 0.11 0.74 8.11 -51.93 -0.42 0.32 16 6 C -0.17 -1.07 9.82 -26.72 -0.26 -1.33 16 7 C -0.16 -1.10 5.05 -90.61 -0.46 -1.56 16 8 H 0.11 0.64 7.50 -51.93 -0.39 0.25 16 9 C 0.15 1.46 5.96 -4.04 -0.02 1.43 16 10 N -0.74 -7.33 5.56 -60.29 -0.33 -7.67 16 11 C 0.51 7.18 7.82 -10.98 -0.09 7.09 16 12 O -0.52 -10.14 16.03 5.56 0.09 -10.05 16 13 C -0.08 -1.01 5.83 -29.03 -0.17 -1.18 16 14 C -0.17 -3.04 4.38 -104.57 -0.46 -3.49 16 15 C -0.06 -1.14 9.69 -39.61 -0.38 -1.53 16 16 C -0.19 -4.29 9.99 -39.40 -0.39 -4.69 16 17 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 18 O -0.18 -5.30 9.76 0.03 0.00 -5.30 16 19 C -0.39 -11.29 9.49 30.89 0.29 -10.99 16 20 H 0.09 2.42 5.20 -52.49 -0.27 2.14 16 21 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 22 N -0.86 -25.94 13.67 55.48 0.76 -25.18 16 23 Si 0.94 21.08 29.55 -169.99 -5.02 16.06 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 27 C -0.23 -5.34 9.17 -39.40 -0.36 -5.70 16 28 C -0.06 -1.11 9.69 -39.61 -0.38 -1.50 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.33 7.29 -51.93 -0.38 -0.05 16 32 H 0.07 0.37 7.90 -51.93 -0.41 -0.04 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.10 0.64 8.03 -51.93 -0.42 0.22 16 37 H 0.09 0.51 8.05 -51.93 -0.42 0.09 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.72 7.87 -51.93 -0.41 0.32 16 40 H 0.40 2.65 8.40 -40.82 -0.34 2.30 16 41 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 42 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 43 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.12 2.50 8.06 -52.48 -0.42 2.08 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.13 2.87 5.64 -52.48 -0.30 2.58 16 47 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 392.57 15.07 5.92 5.92 Total: -1.00 -34.58 392.57 -9.22 -43.79 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -7.53 Total: 4.05 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -3.09 Total: -21.63 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.42 Total: -32.85 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.09 Total: -15.35 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.58 -9.22 -43.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836915961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.001 kcal (2) G-P(sol) polarization free energy of solvation -34.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds