Wall clock time and date at job start Tue Mar 31 2020 12:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46866 * 2 1 4 4 C 1.52990 * 109.47006 * 120.00079 * 2 1 3 5 5 H 1.09004 * 115.56121 * 274.30675 * 4 2 1 6 6 C 1.53003 * 117.50108 * 128.62645 * 4 2 1 7 7 C 1.53002 * 117.50413 * 59.99814 * 4 2 1 8 8 H 1.09000 * 117.49445 * 359.97438 * 7 4 2 9 9 C 1.52999 * 117.50271 * 214.97586 * 7 4 2 10 10 N 1.46502 * 109.46939 * 175.00098 * 9 7 4 11 11 C 1.34776 * 119.99455 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00295 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99601 * 180.27257 * 11 10 9 14 14 C 1.50702 * 109.46932 * 179.72027 * 13 11 10 15 15 C 1.38302 * 119.93535 * 269.72779 * 14 13 11 16 16 C 1.38095 * 120.06711 * 179.72901 * 15 14 13 17 17 C 1.38873 * 119.93053 * 0.54398 * 16 15 14 18 18 O 1.35761 * 120.06814 * 179.75119 * 17 16 15 19 19 C 1.34825 * 117.00140 * 174.44524 * 18 17 16 20 20 H 1.08000 * 119.99720 * 5.05685 * 19 18 17 21 21 C 1.38655 * 120.00141 * 185.05682 * 19 18 17 22 22 N 1.31561 * 119.99628 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00161 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47140 * 59.99791 * 23 21 19 25 25 H 1.48495 * 109.47005 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47007 * 300.00025 * 23 21 19 27 27 C 1.38881 * 119.86620 * 359.73163 * 17 16 15 28 28 C 1.38096 * 119.92462 * 359.97438 * 27 17 16 29 29 H 1.09003 * 109.47313 * 299.99837 * 1 2 3 30 30 H 1.08997 * 109.47550 * 60.00302 * 1 2 3 31 31 H 1.09007 * 109.47113 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46710 * 239.99808 * 2 1 3 33 33 H 1.08999 * 109.47217 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47159 * 300.00023 * 3 2 1 35 35 H 1.09002 * 109.47532 * 59.99865 * 3 2 1 36 36 H 1.08999 * 117.50190 * 145.02027 * 6 4 2 37 37 H 1.09003 * 117.49731 * 359.97438 * 6 4 2 38 38 H 1.09004 * 109.47006 * 55.00193 * 9 7 4 39 39 H 1.08996 * 109.47322 * 295.00609 * 9 7 4 40 40 H 0.96998 * 120.00153 * 359.97438 * 10 9 7 41 41 H 1.08998 * 109.47087 * 299.72435 * 13 11 10 42 42 H 1.09002 * 109.46658 * 59.72565 * 13 11 10 43 43 H 1.07998 * 119.96040 * 0.02562 * 15 14 13 44 44 H 1.08005 * 120.03195 * 180.27512 * 16 15 14 45 45 H 0.96998 * 119.99349 * 180.02562 * 22 21 19 46 46 H 1.08004 * 120.03253 * 180.02562 * 27 17 16 47 47 H 1.07999 * 119.96076 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 2.1271 -0.1061 2.1448 6 6 3.0742 -1.8313 1.0513 7 6 1.6357 -2.1852 1.4343 8 1 1.0060 -2.6344 0.6663 9 6 1.3847 -2.6737 2.8623 10 7 0.8963 -4.0545 2.8273 11 6 0.6056 -4.6957 3.9766 12 8 0.7488 -4.1298 5.0397 13 6 0.1090 -6.1181 3.9410 14 6 -0.1335 -6.6009 5.3478 15 6 0.8835 -7.2229 6.0490 16 6 0.6659 -7.6613 7.3403 17 6 -0.5789 -7.4872 7.9307 18 8 -0.7974 -7.9217 9.1982 19 6 -1.9889 -7.6196 9.7520 20 1 -2.7490 -7.1278 9.1631 21 6 -2.2385 -7.9402 11.0777 22 7 -1.3124 -8.5388 11.7952 23 14 -3.8891 -7.5211 11.8452 24 1 -4.9717 -8.2116 11.0991 25 1 -3.9035 -7.9658 13.2619 26 1 -4.1047 -6.0530 11.7845 27 6 -1.5999 -6.8673 7.2220 28 6 -1.3742 -6.4257 5.9332 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.8416 -1.9465 1.8168 37 1 3.3910 -2.0480 0.0311 38 1 0.6394 -2.0366 3.3385 39 1 2.3145 -2.6314 3.4295 40 1 0.7814 -4.5069 1.9771 41 1 -0.8217 -6.1639 3.3755 42 1 0.8562 -6.7518 3.4631 43 1 1.8502 -7.3615 5.5878 44 1 1.4619 -8.1430 7.8889 45 1 -1.4872 -8.7635 12.7225 46 1 -2.5689 -6.7302 7.6787 47 1 -2.1676 -5.9432 5.3817 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836915961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:35 Heat of formation + Delta-G solvation = -57.256316 kcal Electronic energy + Delta-G solvation = -24911.232035 eV Core-core repulsion = 21251.829495 eV Total energy + Delta-G solvation = -3659.402540 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.09673 -40.44096 -39.42608 -38.18067 -35.79086 -34.39873 -34.02394 -32.78995 -31.77308 -29.02417 -27.99472 -27.54641 -26.45930 -23.78266 -23.63163 -22.61050 -21.99097 -21.27211 -20.49460 -19.83897 -18.85336 -17.92589 -17.28714 -16.71754 -16.39579 -16.10778 -15.97033 -15.78331 -15.55219 -15.45327 -15.08156 -14.73051 -14.51449 -14.38628 -14.35880 -14.05981 -13.92372 -13.59623 -13.31972 -12.99488 -12.95462 -12.74167 -12.47837 -12.36767 -12.29457 -12.23219 -12.14348 -12.12353 -11.97724 -11.52094 -11.17932 -11.08823 -10.92926 -10.79807 -10.60668 -9.99097 -9.75939 -8.89486 -8.47103 -6.15398 0.61882 0.67936 1.33416 1.44780 1.50315 1.75384 2.17656 2.24020 2.81019 2.89065 3.18287 3.53046 3.59150 3.85652 3.87703 3.96399 4.06374 4.13970 4.18270 4.21153 4.31349 4.40293 4.46451 4.50574 4.60357 4.70406 4.72834 4.75984 4.77789 4.81790 4.85161 4.96993 5.03469 5.06908 5.09878 5.14777 5.21627 5.25279 5.31325 5.31812 5.45529 5.53667 5.56485 5.57202 5.71998 5.78743 6.02880 6.23920 6.67106 6.97154 7.39407 7.78606 8.76120 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023805 B = 0.001929 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.956132 B =14509.533370 C =15071.079946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.063 4.063 3 C -0.146 4.146 4 C -0.139 4.139 5 H 0.096 0.904 6 C -0.166 4.166 7 C -0.157 4.157 8 H 0.128 0.872 9 C 0.152 3.848 10 N -0.715 5.715 11 C 0.508 3.492 12 O -0.585 6.585 13 C -0.077 4.077 14 C -0.146 4.146 15 C -0.059 4.059 16 C -0.207 4.207 17 C 0.111 3.889 18 O -0.234 6.234 19 C -0.415 4.415 20 H 0.100 0.900 21 C -0.025 4.025 22 N -0.921 5.921 23 Si 1.020 2.980 24 H -0.255 1.255 25 H -0.270 1.270 26 H -0.260 1.260 27 C -0.245 4.245 28 C -0.061 4.061 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.419 0.581 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.147 0.853 44 H 0.112 0.888 45 H 0.273 0.727 46 H 0.118 0.882 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.477 14.481 -30.132 33.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.081 4.081 3 C -0.203 4.203 4 C -0.158 4.158 5 H 0.114 0.886 6 C -0.203 4.203 7 C -0.175 4.175 8 H 0.145 0.855 9 C 0.028 3.972 10 N -0.369 5.369 11 C 0.296 3.704 12 O -0.464 6.464 13 C -0.116 4.116 14 C -0.147 4.147 15 C -0.077 4.077 16 C -0.226 4.226 17 C 0.061 3.939 18 O -0.141 6.141 19 C -0.491 4.491 20 H 0.117 0.883 21 C -0.222 4.222 22 N -0.559 5.559 23 Si 0.839 3.161 24 H -0.179 1.179 25 H -0.194 1.194 26 H -0.185 1.185 27 C -0.264 4.264 28 C -0.079 4.079 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.128 0.872 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.256 0.744 41 H 0.148 0.852 42 H 0.150 0.850 43 H 0.165 0.835 44 H 0.130 0.870 45 H 0.082 0.918 46 H 0.135 0.865 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.760 14.687 -29.032 32.882 hybrid contribution -0.543 -0.093 0.899 1.054 sum 4.217 14.595 -28.133 31.973 Atomic orbital electron populations 1.21831 0.94899 1.02010 1.01653 1.20704 0.95673 0.96075 0.95664 1.21813 1.01158 0.95433 1.01899 1.22511 1.03122 0.90043 1.00091 0.88598 1.23291 0.91536 1.02100 1.03363 1.22432 0.99842 0.99177 0.96097 0.85461 1.20767 0.98388 0.82320 0.95735 1.45848 1.67412 1.14522 1.09117 1.21238 0.76524 0.89338 0.83325 1.90757 1.53989 1.69487 1.32165 1.20535 1.05560 0.91493 0.94003 1.19286 0.93760 1.04221 0.97402 1.20889 0.99129 0.95611 0.92025 1.20446 0.94849 1.09627 0.97703 1.19943 0.94996 0.93346 0.85634 1.83936 1.37538 1.68423 1.24181 1.21784 0.90260 1.41093 0.96006 0.88293 1.26625 1.04115 0.96137 0.95301 1.70188 1.36078 1.40336 1.09342 0.84638 0.74823 0.79269 0.77395 1.17885 1.19410 1.18472 1.21238 0.99662 1.08107 0.97393 1.20946 0.97530 0.96276 0.93163 0.93437 0.92108 0.92384 0.90375 0.92495 0.91993 0.93117 0.89194 0.87192 0.93057 0.93132 0.74371 0.85226 0.85003 0.83533 0.87004 0.91842 0.86469 0.84360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.03 71.98 0.65 -0.71 16 2 C -0.06 -0.56 3.07 -10.80 -0.03 -0.59 16 3 C -0.15 -1.28 9.17 71.98 0.66 -0.62 16 4 C -0.14 -1.52 4.87 -10.79 -0.05 -1.57 16 5 H 0.10 1.26 8.11 -2.38 -0.02 1.24 16 6 C -0.17 -1.64 9.82 30.60 0.30 -1.34 16 7 C -0.16 -1.68 5.05 -10.79 -0.05 -1.73 16 8 H 0.13 0.95 7.50 -2.39 -0.02 0.93 16 9 C 0.15 2.63 5.96 86.38 0.51 3.15 16 10 N -0.72 -11.48 5.56 -463.06 -2.57 -14.05 16 11 C 0.51 12.54 7.82 87.66 0.69 13.23 16 12 O -0.58 -21.88 16.03 -3.03 -0.05 -21.93 16 13 C -0.08 -1.53 5.83 29.10 0.17 -1.36 16 14 C -0.15 -4.75 4.38 -19.83 -0.09 -4.83 16 15 C -0.06 -2.11 9.69 22.25 0.22 -1.90 16 16 C -0.21 -9.53 9.99 22.39 0.22 -9.31 16 17 C 0.11 5.93 6.65 22.58 0.15 6.08 16 18 O -0.23 -14.87 9.76 -22.81 -0.22 -15.10 16 19 C -0.42 -25.39 9.49 67.92 0.64 -24.75 16 20 H 0.10 5.58 5.20 -2.91 -0.02 5.56 16 21 C -0.02 -1.45 5.49 84.83 0.47 -0.99 16 22 N -0.92 -58.47 13.67 21.61 0.30 -58.18 16 23 Si 1.02 44.53 29.55 68.60 2.03 46.56 16 24 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 26 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 27 C -0.24 -11.49 9.17 22.39 0.21 -11.29 16 28 C -0.06 -2.27 9.69 22.25 0.22 -2.05 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.51 7.29 -2.38 -0.02 0.50 16 32 H 0.08 0.59 7.90 -2.39 -0.02 0.57 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.09 1.03 8.03 -2.39 -0.02 1.01 16 37 H 0.11 0.79 8.05 -2.39 -0.02 0.77 16 38 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.05 1.06 7.87 -2.39 -0.02 1.04 16 40 H 0.42 3.36 8.40 -92.71 -0.78 2.58 16 41 H 0.13 1.75 8.08 -2.39 -0.02 1.73 16 42 H 0.13 1.73 8.08 -2.39 -0.02 1.71 16 43 H 0.15 4.12 8.06 -2.91 -0.02 4.09 16 44 H 0.11 5.08 8.06 -2.91 -0.02 5.05 16 45 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 46 H 0.12 5.56 5.64 -2.91 -0.02 5.55 16 47 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -83.12 392.57 4.54 -78.58 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.18 Total: 24.69 kcal Atomic # 6 Polarization: -45.46 SS G_CDS: 4.87 Total: -40.58 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: -2.28 Total: -72.23 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -0.27 Total: -37.02 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -83.12 4.54 -78.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836915961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.327 kcal (2) G-P(sol) polarization free energy of solvation -83.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds