Wall clock time and date at job start Tue Mar 31 2020 12:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50706 * 109.47241 * 2 1 4 4 C 1.34981 * 119.99625 * 87.46020 * 3 2 1 5 5 C 1.46227 * 120.00235 * 354.52319 * 4 3 2 6 6 O 1.21755 * 120.00087 * 353.45756 * 5 4 3 7 7 N 1.34774 * 119.99697 * 173.46699 * 5 4 3 8 8 C 1.36711 * 120.00395 * 355.00253 * 7 5 4 9 9 H 1.08003 * 119.99548 * 329.61217 * 8 7 5 10 10 C 1.39128 * 120.00348 * 149.61507 * 8 7 5 11 11 N 1.31320 * 119.99866 * 342.29385 * 10 8 7 12 12 Si 1.86797 * 120.00100 * 162.29794 * 10 8 7 13 13 H 1.48499 * 109.47090 * 89.99615 * 12 10 8 14 14 H 1.48494 * 109.47008 * 209.99611 * 12 10 8 15 15 H 1.48502 * 109.47088 * 329.99623 * 12 10 8 16 16 C 1.46507 * 119.99951 * 175.00184 * 7 5 4 17 17 C 1.52997 * 109.47088 * 89.99615 * 16 7 5 18 18 O 1.42905 * 109.47170 * 65.00207 * 17 16 7 19 19 C 1.42894 * 114.00227 * 179.97438 * 18 17 16 20 20 C 1.47141 * 119.99971 * 267.46501 * 3 2 1 21 21 C 1.39881 * 120.17046 * 64.72356 * 20 3 2 22 22 C 1.37876 * 119.81888 * 179.78958 * 21 20 3 23 23 C 1.38412 * 120.17437 * 0.48530 * 22 21 20 24 24 C 1.50710 * 119.82526 * 179.76674 * 23 22 21 25 25 C 1.38413 * 120.35202 * 359.74124 * 23 22 21 26 26 C 1.37878 * 120.17672 * 0.02722 * 25 23 22 27 27 H 1.09010 * 109.47295 * 59.99996 * 1 2 3 28 28 H 1.09007 * 109.47276 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47710 * 300.00222 * 1 2 3 30 30 H 1.08996 * 109.47076 * 119.99836 * 2 1 3 31 31 H 1.08995 * 109.47355 * 239.99981 * 2 1 3 32 32 H 1.08006 * 119.99401 * 174.51191 * 4 3 2 33 33 H 0.97000 * 120.00039 * 185.02902 * 11 10 8 34 34 H 1.08994 * 109.47241 * 209.99941 * 16 7 5 35 35 H 1.09007 * 109.46964 * 329.99928 * 16 7 5 36 36 H 1.09000 * 109.47257 * 185.00329 * 17 16 7 37 37 H 1.09001 * 109.47502 * 305.00294 * 17 16 7 38 38 H 1.09004 * 109.47610 * 300.00644 * 19 18 17 39 39 H 1.09005 * 109.46759 * 59.99981 * 19 18 17 40 40 H 1.09000 * 109.47185 * 179.97438 * 19 18 17 41 41 H 1.07997 * 120.09202 * 0.02562 * 21 20 3 42 42 H 1.07999 * 119.91601 * 180.23226 * 22 21 20 43 43 H 1.09000 * 109.46902 * 269.97665 * 24 23 22 44 44 H 1.08998 * 109.46657 * 29.97620 * 24 23 22 45 45 H 1.08999 * 109.47144 * 149.97683 * 24 23 22 46 46 H 1.08007 * 119.91091 * 179.97438 * 25 23 22 47 47 H 1.07996 * 120.08647 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2084 2.0744 1.1679 5 6 1.7997 1.4486 2.4247 6 8 1.1936 0.3928 2.4103 7 7 2.0939 2.0408 3.5991 8 6 2.8616 3.1718 3.6211 9 1 3.6132 3.3290 2.8615 10 6 2.6749 4.1201 4.6218 11 7 1.5669 4.1213 5.3267 12 14 4.0001 5.3917 4.9627 13 1 3.7608 6.5932 4.1234 14 1 3.9619 5.7742 6.3970 15 1 5.3312 4.8185 4.6385 16 6 1.5908 1.4726 4.8523 17 6 2.6046 0.4655 5.3988 18 8 3.8108 1.1465 5.7499 19 6 4.8291 0.2922 6.2745 20 6 2.3307 2.0957 -1.2730 21 6 1.3050 2.3569 -2.1876 22 6 1.5920 2.9935 -3.3764 23 6 2.8926 3.3649 -3.6703 24 6 3.1983 4.0557 -4.9744 25 6 3.9138 3.1058 -2.7726 26 6 3.6424 2.4742 -1.5775 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 2.6514 3.0594 1.1739 33 1 1.4046 4.8254 5.9739 34 1 1.4432 2.2708 5.5797 35 1 0.6417 0.9691 4.6678 36 1 2.1923 -0.0221 6.2822 37 1 2.8191 -0.2840 4.6370 38 1 4.4628 -0.1987 7.1761 39 1 5.0898 -0.4611 5.5310 40 1 5.7116 0.8846 6.5158 41 1 0.2904 2.0641 -1.9614 42 1 0.8007 3.1993 -4.0819 43 1 3.4322 3.3102 -5.7343 44 1 2.3315 4.6365 -5.2897 45 1 4.0523 4.7201 -4.8422 46 1 4.9262 3.3984 -3.0095 47 1 4.4404 2.2723 -0.8783 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837234826.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:44 Heat of formation + Delta-G solvation = -36.321934 kcal Electronic energy + Delta-G solvation = -26942.378289 eV Core-core repulsion = 23283.883532 eV Total energy + Delta-G solvation = -3658.494757 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.38560 -38.62221 -37.00696 -35.49722 -34.31434 -31.95095 -31.47461 -30.86390 -30.09354 -28.83264 -26.66024 -25.75821 -24.70319 -23.56685 -22.41089 -21.97935 -21.33541 -19.50753 -18.57370 -16.69330 -16.28721 -15.67803 -15.31197 -15.24519 -15.07531 -14.85602 -14.47800 -14.27273 -14.07144 -13.80528 -13.65019 -13.30471 -13.24591 -12.97169 -12.50854 -12.36599 -12.19087 -11.93457 -11.85728 -11.64221 -11.44983 -11.33436 -11.11408 -11.01277 -10.87843 -10.85322 -10.58857 -10.42527 -10.28577 -10.12871 -9.95749 -9.07599 -8.90746 -8.78091 -8.65194 -8.17617 -7.99666 -7.45921 -6.27230 -3.91145 1.35161 1.59386 2.24392 3.18568 3.26070 3.31434 3.90488 4.12947 4.41902 4.59605 4.78710 4.93992 4.95669 5.13157 5.17713 5.29251 5.38388 5.52613 5.57733 5.65552 5.71673 5.75957 5.77636 5.83401 5.89710 6.02986 6.08086 6.14358 6.16039 6.21573 6.25637 6.26846 6.42357 6.45433 6.51223 6.56652 6.71179 6.76250 6.78637 6.91593 7.00367 7.13281 7.22954 7.34678 7.37598 7.62518 7.84700 8.06462 8.45387 9.14626 9.57609 9.98177 10.68921 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012842 B = 0.004000 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.837704 B = 6998.203729 C = 8110.095956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.076 4.076 3 C -0.065 4.065 4 C -0.140 4.140 5 C 0.478 3.522 6 O -0.603 6.603 7 N -0.414 5.414 8 C -0.311 4.311 9 H 0.089 0.911 10 C 0.048 3.952 11 N -0.865 5.865 12 Si 0.921 3.079 13 H -0.280 1.280 14 H -0.282 1.282 15 H -0.269 1.269 16 C 0.092 3.908 17 C 0.057 3.943 18 O -0.361 6.361 19 C 0.031 3.969 20 C -0.036 4.036 21 C -0.104 4.104 22 C -0.121 4.121 23 C -0.099 4.099 24 C -0.111 4.111 25 C -0.120 4.120 26 C -0.106 4.106 27 H 0.034 0.966 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.042 0.958 32 H 0.124 0.876 33 H 0.270 0.730 34 H 0.140 0.860 35 H 0.067 0.933 36 H 0.036 0.964 37 H 0.037 0.963 38 H 0.029 0.971 39 H 0.030 0.970 40 H 0.076 0.924 41 H 0.124 0.876 42 H 0.118 0.882 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.119 0.881 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.121 -2.384 -10.487 11.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.113 4.113 3 C -0.068 4.068 4 C -0.161 4.161 5 C 0.271 3.729 6 O -0.493 6.493 7 N -0.129 5.129 8 C -0.440 4.440 9 H 0.107 0.893 10 C -0.157 4.157 11 N -0.503 5.503 12 Si 0.748 3.252 13 H -0.206 1.206 14 H -0.208 1.208 15 H -0.193 1.193 16 C -0.031 4.031 17 C -0.021 4.021 18 O -0.279 6.279 19 C -0.067 4.067 20 C -0.036 4.036 21 C -0.122 4.122 22 C -0.140 4.140 23 C -0.099 4.099 24 C -0.168 4.168 25 C -0.138 4.138 26 C -0.124 4.124 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.060 0.940 32 H 0.142 0.858 33 H 0.081 0.919 34 H 0.157 0.843 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.049 0.951 40 H 0.094 0.906 41 H 0.142 0.858 42 H 0.136 0.864 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.137 0.863 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.805 -2.583 -10.236 10.923 hybrid contribution 0.780 0.474 0.365 0.983 sum 3.584 -2.109 -9.871 10.711 Atomic orbital electron populations 1.21597 0.95158 1.00574 1.01266 1.20648 0.96395 0.92185 1.02091 1.20812 0.99322 0.95975 0.90689 1.23006 1.00272 1.00686 0.92103 1.18193 0.83579 0.86677 0.84455 1.90577 1.46896 1.24387 1.87466 1.43319 1.43313 1.22904 1.03385 1.19380 1.14632 0.96774 1.13186 0.89306 1.25234 0.96163 0.97958 0.96319 1.69467 1.23213 1.32555 1.25090 0.86019 0.81488 0.79900 0.77791 1.20629 1.20762 1.19326 1.21941 0.93235 0.98148 0.89790 1.22971 0.86401 0.95780 0.96924 1.88159 1.23603 1.33140 1.83044 1.22633 0.92335 0.95058 0.96635 1.19026 0.93157 0.97384 0.93998 1.21319 0.98966 0.98577 0.93334 1.20896 0.95920 0.99982 0.97153 1.19930 0.93558 0.99822 0.96592 1.20760 1.02040 0.99656 0.94328 1.20907 0.98605 1.00099 0.94213 1.21390 0.95996 0.98217 0.96773 0.94723 0.93780 0.91039 0.88021 0.93970 0.85840 0.91889 0.84324 0.91457 0.94572 0.94455 0.95280 0.95110 0.90574 0.85843 0.86357 0.91544 0.91801 0.91774 0.86312 0.85818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.39 37.15 0.35 -1.88 16 2 C -0.08 -1.38 5.31 -27.88 -0.15 -1.53 16 3 C -0.06 -1.21 4.74 -102.16 -0.48 -1.69 16 4 C -0.14 -2.98 8.80 -37.53 -0.33 -3.31 16 5 C 0.48 11.54 7.42 -13.05 -0.10 11.44 16 6 O -0.60 -14.83 11.01 5.14 0.06 -14.77 16 7 N -0.41 -10.41 2.55 -116.46 -0.30 -10.71 16 8 C -0.31 -7.94 8.09 -15.05 -0.12 -8.06 16 9 H 0.09 2.21 6.71 -52.48 -0.35 1.85 16 10 C 0.05 1.21 5.12 -17.44 -0.09 1.12 16 11 N -0.86 -22.59 10.74 55.51 0.60 -22.00 16 12 Si 0.92 20.10 29.59 -169.99 -5.03 15.07 16 13 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 14 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 15 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 16 C 0.09 2.22 5.39 -4.04 -0.02 2.20 16 17 C 0.06 1.21 6.28 37.16 0.23 1.44 16 18 O -0.36 -7.90 10.17 -35.23 -0.36 -8.26 16 19 C 0.03 0.51 11.01 101.05 1.11 1.62 16 20 C -0.04 -0.58 5.30 -105.06 -0.56 -1.14 16 21 C -0.10 -1.54 9.77 -39.10 -0.38 -1.92 16 22 C -0.12 -1.56 9.68 -39.65 -0.38 -1.94 16 23 C -0.10 -1.22 5.89 -104.49 -0.62 -1.83 16 24 C -0.11 -1.01 10.00 36.01 0.36 -0.64 16 25 C -0.12 -1.56 9.68 -39.65 -0.38 -1.95 16 26 C -0.11 -1.59 9.73 -39.10 -0.38 -1.97 16 27 H 0.03 0.53 6.61 -51.92 -0.34 0.18 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.44 6.59 -51.93 -0.34 1.10 16 30 H 0.10 2.10 5.83 -51.93 -0.30 1.79 16 31 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.12 2.64 6.62 -52.48 -0.35 2.29 16 33 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 34 H 0.14 3.59 4.83 -51.93 -0.25 3.34 16 35 H 0.07 1.61 7.50 -51.92 -0.39 1.22 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.12 1.74 6.53 -52.49 -0.34 1.40 16 42 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 45 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 46 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 47 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 381.95 15.07 5.76 5.76 Total: -1.00 -28.45 381.95 -8.51 -36.96 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -7.29 Total: 7.99 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -1.94 Total: -10.04 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.30 Total: -32.71 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.30 Total: -23.03 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.45 -8.51 -36.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837234826.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.638 kcal (2) G-P(sol) polarization free energy of solvation -28.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds