Wall clock time and date at job start Tue Mar 31 2020 12:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50706 * 109.47241 * 2 1 4 4 C 1.34981 * 119.99625 * 87.46020 * 3 2 1 5 5 C 1.46227 * 120.00235 * 354.52319 * 4 3 2 6 6 O 1.21755 * 120.00087 * 353.45756 * 5 4 3 7 7 N 1.34774 * 119.99697 * 173.46699 * 5 4 3 8 8 C 1.36711 * 120.00395 * 355.00253 * 7 5 4 9 9 H 1.08003 * 119.99548 * 329.61217 * 8 7 5 10 10 C 1.39128 * 120.00348 * 149.61507 * 8 7 5 11 11 N 1.31320 * 119.99866 * 342.29385 * 10 8 7 12 12 Si 1.86797 * 120.00100 * 162.29794 * 10 8 7 13 13 H 1.48499 * 109.47090 * 89.99615 * 12 10 8 14 14 H 1.48494 * 109.47008 * 209.99611 * 12 10 8 15 15 H 1.48502 * 109.47088 * 329.99623 * 12 10 8 16 16 C 1.46507 * 119.99951 * 175.00184 * 7 5 4 17 17 C 1.52997 * 109.47088 * 89.99615 * 16 7 5 18 18 O 1.42905 * 109.47170 * 65.00207 * 17 16 7 19 19 C 1.42894 * 114.00227 * 179.97438 * 18 17 16 20 20 C 1.47141 * 119.99971 * 267.46501 * 3 2 1 21 21 C 1.39881 * 120.17046 * 64.72356 * 20 3 2 22 22 C 1.37876 * 119.81888 * 179.78958 * 21 20 3 23 23 C 1.38412 * 120.17437 * 0.48530 * 22 21 20 24 24 C 1.50710 * 119.82526 * 179.76674 * 23 22 21 25 25 C 1.38413 * 120.35202 * 359.74124 * 23 22 21 26 26 C 1.37878 * 120.17672 * 0.02722 * 25 23 22 27 27 H 1.09010 * 109.47295 * 59.99996 * 1 2 3 28 28 H 1.09007 * 109.47276 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47710 * 300.00222 * 1 2 3 30 30 H 1.08996 * 109.47076 * 119.99836 * 2 1 3 31 31 H 1.08995 * 109.47355 * 239.99981 * 2 1 3 32 32 H 1.08006 * 119.99401 * 174.51191 * 4 3 2 33 33 H 0.97000 * 120.00039 * 185.02902 * 11 10 8 34 34 H 1.08994 * 109.47241 * 209.99941 * 16 7 5 35 35 H 1.09007 * 109.46964 * 329.99928 * 16 7 5 36 36 H 1.09000 * 109.47257 * 185.00329 * 17 16 7 37 37 H 1.09001 * 109.47502 * 305.00294 * 17 16 7 38 38 H 1.09004 * 109.47610 * 300.00644 * 19 18 17 39 39 H 1.09005 * 109.46759 * 59.99981 * 19 18 17 40 40 H 1.09000 * 109.47185 * 179.97438 * 19 18 17 41 41 H 1.07997 * 120.09202 * 0.02562 * 21 20 3 42 42 H 1.07999 * 119.91601 * 180.23226 * 22 21 20 43 43 H 1.09000 * 109.46902 * 269.97665 * 24 23 22 44 44 H 1.08998 * 109.46657 * 29.97620 * 24 23 22 45 45 H 1.08999 * 109.47144 * 149.97683 * 24 23 22 46 46 H 1.08007 * 119.91091 * 179.97438 * 25 23 22 47 47 H 1.07996 * 120.08647 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2084 2.0744 1.1679 5 6 1.7997 1.4486 2.4247 6 8 1.1936 0.3928 2.4103 7 7 2.0939 2.0408 3.5991 8 6 2.8616 3.1718 3.6211 9 1 3.6132 3.3290 2.8615 10 6 2.6749 4.1201 4.6218 11 7 1.5669 4.1213 5.3267 12 14 4.0001 5.3917 4.9627 13 1 3.7608 6.5932 4.1234 14 1 3.9619 5.7742 6.3970 15 1 5.3312 4.8185 4.6385 16 6 1.5908 1.4726 4.8523 17 6 2.6046 0.4655 5.3988 18 8 3.8108 1.1465 5.7499 19 6 4.8291 0.2922 6.2745 20 6 2.3307 2.0957 -1.2730 21 6 1.3050 2.3569 -2.1876 22 6 1.5920 2.9935 -3.3764 23 6 2.8926 3.3649 -3.6703 24 6 3.1983 4.0557 -4.9744 25 6 3.9138 3.1058 -2.7726 26 6 3.6424 2.4742 -1.5775 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 2.6514 3.0594 1.1739 33 1 1.4046 4.8254 5.9739 34 1 1.4432 2.2708 5.5797 35 1 0.6417 0.9691 4.6678 36 1 2.1923 -0.0221 6.2822 37 1 2.8191 -0.2840 4.6370 38 1 4.4628 -0.1987 7.1761 39 1 5.0898 -0.4611 5.5310 40 1 5.7116 0.8846 6.5158 41 1 0.2904 2.0641 -1.9614 42 1 0.8007 3.1993 -4.0819 43 1 3.4322 3.3102 -5.7343 44 1 2.3315 4.6365 -5.2897 45 1 4.0523 4.7201 -4.8422 46 1 4.9262 3.3984 -3.0095 47 1 4.4404 2.2723 -0.8783 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837234826.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:43 Heat of formation + Delta-G solvation = -49.643254 kcal Electronic energy + Delta-G solvation = -26942.955945 eV Core-core repulsion = 23283.883532 eV Total energy + Delta-G solvation = -3659.072413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.85367 -40.08440 -38.62335 -37.10779 -35.97421 -33.49971 -32.97952 -32.03673 -31.61443 -30.37254 -27.80062 -27.27909 -26.48655 -25.04678 -23.66752 -23.43223 -22.58494 -21.19038 -20.19836 -18.38931 -18.01848 -17.15350 -17.05593 -16.63255 -16.24108 -16.21680 -16.03947 -15.83891 -15.69618 -15.23537 -14.94827 -14.69487 -14.45821 -14.28086 -13.87148 -13.71805 -13.56701 -13.42244 -13.19708 -12.98375 -12.94795 -12.78468 -12.71546 -12.48447 -12.37211 -12.33829 -12.09603 -11.91849 -11.80493 -11.71012 -11.63181 -10.92047 -10.50556 -10.09282 -10.01735 -9.84414 -9.41063 -9.20236 -8.17384 -5.87878 0.13637 0.52529 0.74243 1.44455 1.49055 1.59016 2.32369 2.58779 2.81352 3.00902 3.11383 3.30757 3.81237 3.99110 4.04379 4.13322 4.14341 4.28234 4.36597 4.44491 4.52180 4.54176 4.55639 4.58686 4.64823 4.67191 4.70654 4.76511 4.79912 4.88742 4.89805 4.93448 4.96488 5.08108 5.19534 5.29165 5.34074 5.40506 5.43554 5.46392 5.58016 5.63669 5.71075 5.72681 5.86938 6.03636 6.12860 6.45141 6.52891 7.21805 7.69209 8.09255 8.79261 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012842 B = 0.004000 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.837704 B = 6998.203729 C = 8110.095956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.078 4.078 3 C -0.023 4.023 4 C -0.181 4.181 5 C 0.473 3.527 6 O -0.616 6.616 7 N -0.431 5.431 8 C -0.324 4.324 9 H 0.087 0.913 10 C 0.010 3.990 11 N -0.893 5.893 12 Si 0.979 3.021 13 H -0.273 1.273 14 H -0.281 1.281 15 H -0.267 1.267 16 C 0.091 3.909 17 C 0.069 3.931 18 O -0.394 6.394 19 C 0.025 3.975 20 C -0.070 4.070 21 C -0.110 4.110 22 C -0.123 4.123 23 C -0.092 4.092 24 C -0.111 4.111 25 C -0.124 4.124 26 C -0.116 4.116 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.271 0.729 34 H 0.123 0.877 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.027 0.973 38 H 0.051 0.949 39 H 0.037 0.963 40 H 0.092 0.908 41 H 0.126 0.874 42 H 0.147 0.853 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.143 0.857 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.169 -1.912 -13.044 13.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.115 4.115 3 C -0.026 4.026 4 C -0.202 4.202 5 C 0.266 3.734 6 O -0.507 6.507 7 N -0.147 5.147 8 C -0.452 4.452 9 H 0.104 0.896 10 C -0.191 4.191 11 N -0.533 5.533 12 Si 0.804 3.196 13 H -0.199 1.199 14 H -0.206 1.206 15 H -0.192 1.192 16 C -0.033 4.033 17 C -0.009 4.009 18 O -0.313 6.313 19 C -0.072 4.072 20 C -0.070 4.070 21 C -0.128 4.128 22 C -0.141 4.141 23 C -0.092 4.092 24 C -0.167 4.167 25 C -0.141 4.141 26 C -0.134 4.134 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.082 0.918 34 H 0.140 0.860 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.045 0.955 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.110 0.890 41 H 0.144 0.856 42 H 0.164 0.836 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.161 0.839 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.858 -2.121 -12.801 13.537 hybrid contribution 0.447 0.241 0.959 1.086 sum 4.305 -1.880 -11.842 12.739 Atomic orbital electron populations 1.21496 0.94225 1.01468 1.00657 1.20650 0.97129 0.91848 1.01868 1.21101 0.94734 0.95649 0.91108 1.22757 1.04427 1.01058 0.91928 1.18675 0.83023 0.86456 0.85211 1.90554 1.47364 1.24853 1.87908 1.43467 1.43992 1.23338 1.03869 1.19510 1.14795 0.97250 1.13609 0.89553 1.25933 0.97692 0.99564 0.95954 1.69579 1.24624 1.33325 1.25727 0.85134 0.79067 0.77877 0.77520 1.19855 1.20633 1.19152 1.21860 0.93831 0.98116 0.89483 1.22754 0.86180 0.94449 0.97498 1.88091 1.24467 1.35094 1.83606 1.22871 0.91620 0.95137 0.97534 1.18987 0.94600 0.99873 0.93572 1.21412 0.98604 0.99021 0.93805 1.21234 0.97148 0.98970 0.96711 1.20400 0.93036 0.98252 0.97540 1.20841 1.03122 1.00084 0.92646 1.21210 1.00227 0.99314 0.93381 1.21456 0.95343 0.98761 0.97848 0.92431 0.92194 0.94408 0.90735 0.91523 0.86601 0.91833 0.85960 0.92647 0.92011 0.95512 0.93052 0.94414 0.88989 0.85595 0.83558 0.89998 0.90520 0.90714 0.83898 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.17 9.39 71.98 0.68 -3.49 16 2 C -0.08 -2.84 5.31 29.85 0.16 -2.68 16 3 C -0.02 -0.87 4.74 -18.27 -0.09 -0.96 16 4 C -0.18 -8.08 8.80 23.60 0.21 -7.88 16 5 C 0.47 24.01 7.42 86.32 0.64 24.65 16 6 O -0.62 -31.80 11.01 -4.53 -0.05 -31.85 16 7 N -0.43 -22.73 2.55 -640.57 -1.63 -24.36 16 8 C -0.32 -17.13 8.09 84.15 0.68 -16.45 16 9 H 0.09 4.48 6.71 -2.91 -0.02 4.46 16 10 C 0.01 0.52 5.12 84.98 0.44 0.96 16 11 N -0.89 -48.15 10.74 21.69 0.23 -47.92 16 12 Si 0.98 41.74 29.59 68.60 2.03 43.77 16 13 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 14 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 15 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 16 C 0.09 4.57 5.39 86.38 0.47 5.03 16 17 C 0.07 3.00 6.28 71.98 0.45 3.45 16 18 O -0.39 -17.36 10.17 -148.98 -1.52 -18.88 16 19 C 0.02 0.80 11.01 113.37 1.25 2.04 16 20 C -0.07 -2.26 5.30 -20.15 -0.11 -2.37 16 21 C -0.11 -3.07 9.77 22.58 0.22 -2.85 16 22 C -0.12 -2.77 9.68 22.23 0.22 -2.55 16 23 C -0.09 -1.95 5.89 -19.78 -0.12 -2.06 16 24 C -0.11 -1.51 10.00 71.24 0.71 -0.80 16 25 C -0.12 -2.90 9.68 22.23 0.22 -2.68 16 26 C -0.12 -3.38 9.73 22.58 0.22 -3.16 16 27 H 0.06 1.68 6.61 -2.38 -0.02 1.67 16 28 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.04 1.55 6.59 -2.39 -0.02 1.53 16 30 H 0.07 3.17 5.83 -2.39 -0.01 3.15 16 31 H 0.07 2.10 8.10 -2.39 -0.02 2.08 16 32 H 0.12 5.26 6.62 -2.91 -0.02 5.24 16 33 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 34 H 0.12 6.63 4.83 -2.39 -0.01 6.62 16 35 H 0.06 2.81 7.50 -2.38 -0.02 2.79 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.09 2.62 8.14 -2.39 -0.02 2.61 16 41 H 0.13 3.34 6.53 -2.91 -0.02 3.32 16 42 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 45 H 0.07 0.90 8.08 -2.39 -0.02 0.88 16 46 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 47 H 0.12 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -63.95 381.95 6.26 -57.69 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: 0.95 Total: 33.35 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 6.24 Total: -11.79 kcal Atomic # 7 Polarization: -70.88 SS G_CDS: -1.40 Total: -72.28 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -1.57 Total: -50.73 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -63.95 6.26 -57.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837234826.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.045 kcal (2) G-P(sol) polarization free energy of solvation -63.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds