Wall clock time and date at job start Tue Mar 31 2020 12:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47194 * 2 1 4 4 C 1.34974 * 120.00201 * 95.00171 * 3 2 1 5 5 C 1.46233 * 119.99987 * 179.97438 * 4 3 2 6 6 O 1.21756 * 120.00198 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99948 * 179.97438 * 5 4 3 8 8 C 1.36715 * 120.00088 * 0.02562 * 7 5 4 9 9 H 1.08006 * 119.99633 * 317.95150 * 8 7 5 10 10 C 1.39122 * 120.00334 * 137.95848 * 8 7 5 11 11 N 1.31326 * 119.99787 * 342.13857 * 10 8 7 12 12 Si 1.86803 * 119.99975 * 162.14487 * 10 8 7 13 13 H 1.48493 * 109.47606 * 59.99821 * 12 10 8 14 14 H 1.48498 * 109.46956 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46952 * 299.99503 * 12 10 8 16 16 C 1.46493 * 120.00286 * 179.97438 * 7 5 4 17 17 C 1.53000 * 109.46893 * 84.47599 * 16 7 5 18 18 O 1.42892 * 109.47344 * 65.00418 * 17 16 7 19 19 C 1.42896 * 114.00386 * 180.02562 * 18 17 16 20 20 C 1.47149 * 119.99708 * 274.99814 * 3 2 1 21 21 C 1.39881 * 120.17197 * 244.99745 * 20 3 2 22 22 C 1.37873 * 119.82035 * 179.97438 * 21 20 3 23 23 C 1.38418 * 120.17671 * 0.27981 * 22 21 20 24 24 C 1.50700 * 119.82774 * 179.72328 * 23 22 21 25 25 C 1.38417 * 120.34593 * 359.44378 * 23 22 21 26 26 C 1.37875 * 120.17921 * 0.55457 * 25 23 22 27 27 H 1.08996 * 109.46967 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46849 * 299.99877 * 1 2 3 29 29 H 1.08997 * 109.46993 * 60.00340 * 1 2 3 30 30 H 1.09000 * 109.47124 * 239.99401 * 2 1 3 31 31 H 1.09003 * 109.47042 * 120.00128 * 2 1 3 32 32 H 1.08004 * 120.00293 * 359.97438 * 4 3 2 33 33 H 0.97003 * 119.99453 * 180.02562 * 11 10 8 34 34 H 1.08994 * 109.47728 * 204.47813 * 16 7 5 35 35 H 1.09000 * 109.47019 * 324.47856 * 16 7 5 36 36 H 1.09003 * 109.47307 * 185.00690 * 17 16 7 37 37 H 1.08998 * 109.47031 * 304.99946 * 17 16 7 38 38 H 1.08996 * 109.47413 * 59.99694 * 19 18 17 39 39 H 1.09000 * 109.47613 * 179.97438 * 19 18 17 40 40 H 1.08996 * 109.47271 * 299.99972 * 19 18 17 41 41 H 1.08001 * 120.08727 * 359.96145 * 21 20 3 42 42 H 1.07995 * 119.91570 * 180.02562 * 22 21 20 43 43 H 1.08999 * 109.47172 * 89.99577 * 24 23 22 44 44 H 1.08995 * 109.47162 * 209.99997 * 24 23 22 45 45 H 1.09000 * 109.46705 * 330.00236 * 24 23 22 46 46 H 1.08003 * 119.90734 * 180.25711 * 25 23 22 47 47 H 1.07997 * 120.09135 * 179.74738 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3534 2.0231 1.1644 5 6 2.8414 3.4016 1.1643 6 8 2.9585 4.0059 0.1138 7 7 3.1615 4.0032 2.3271 8 6 3.0305 3.3246 3.5067 9 1 2.1614 2.7075 3.6809 10 6 4.0165 3.4290 4.4825 11 7 5.2110 3.8722 4.1643 12 14 3.6414 2.9384 6.2455 13 1 3.2449 1.5080 6.2878 14 1 4.8499 3.1426 7.0839 15 1 2.5309 3.7755 6.7666 16 6 3.6509 5.3840 2.3270 17 6 2.4617 6.3465 2.3126 18 8 1.7218 6.2079 3.5271 19 6 0.5833 7.0669 3.6156 20 6 2.1729 2.1514 -1.2695 21 6 3.4380 2.5464 -1.7170 22 6 3.5613 3.2302 -2.9079 23 6 2.4371 3.5310 -3.6572 24 6 2.5804 4.2841 -4.9546 25 6 1.1824 3.1385 -3.2240 26 6 1.0422 2.4541 -2.0354 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.2499 1.4870 2.0963 33 1 5.8986 3.9446 4.8447 34 1 4.2482 5.5579 3.2220 35 1 4.2649 5.5518 1.4422 36 1 2.8241 7.3706 2.2228 37 1 1.8164 6.1141 1.4654 38 1 -0.1009 6.8490 2.7955 39 1 0.0756 6.9008 4.5657 40 1 0.9064 8.1060 3.5527 41 1 4.3157 2.3166 -1.1311 42 1 4.5373 3.5356 -3.2550 43 1 2.7139 3.5764 -5.7727 44 1 1.6838 4.8783 -5.1308 45 1 3.4474 4.9424 -4.8986 46 1 0.3103 3.3733 -3.8163 47 1 0.0622 2.1522 -1.6967 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837234829.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:49 Heat of formation + Delta-G solvation = -38.543515 kcal Electronic energy + Delta-G solvation = -27448.258378 eV Core-core repulsion = 23789.667285 eV Total energy + Delta-G solvation = -3658.591092 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.29060 -38.23934 -36.94567 -35.47789 -34.46004 -31.86330 -31.52520 -30.49171 -30.08542 -28.87250 -26.35946 -25.77520 -24.71253 -23.86294 -22.04506 -21.93057 -21.11915 -19.41970 -18.45248 -17.05382 -16.22974 -15.46231 -15.33301 -15.13294 -14.79594 -14.60931 -14.42536 -14.26955 -14.09316 -13.71053 -13.47798 -13.38313 -13.03178 -12.88619 -12.68739 -12.34539 -12.02972 -11.95965 -11.81664 -11.50774 -11.47450 -11.24987 -11.13675 -11.06293 -10.97947 -10.86145 -10.59744 -10.45078 -10.37664 -10.21498 -10.00490 -9.13513 -8.95559 -8.72991 -8.38808 -8.18742 -7.38793 -7.34624 -6.32042 -3.99842 1.70036 2.08877 2.36237 3.19840 3.25598 3.30652 4.15368 4.36676 4.47278 4.55881 4.81302 5.12521 5.14815 5.27172 5.31260 5.39065 5.52757 5.54634 5.61238 5.67187 5.72961 5.73817 5.78561 5.92442 5.99094 6.01975 6.02860 6.08031 6.09782 6.19067 6.19804 6.28279 6.35973 6.42713 6.43817 6.59520 6.66962 6.73560 6.87445 7.11180 7.14715 7.21918 7.24933 7.33457 7.49127 7.64524 7.85255 8.05513 8.41648 9.15310 9.58924 10.02050 10.70999 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012454 B = 0.004565 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.807481 B = 6132.312961 C = 6963.032458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.071 4.071 4 C -0.137 4.137 5 C 0.487 3.513 6 O -0.593 6.593 7 N -0.417 5.417 8 C -0.323 4.323 9 H 0.084 0.916 10 C 0.050 3.950 11 N -0.863 5.863 12 Si 0.914 3.086 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.271 1.271 16 C 0.122 3.878 17 C 0.052 3.948 18 O -0.366 6.366 19 C 0.032 3.968 20 C -0.014 4.014 21 C -0.037 4.037 22 C -0.128 4.128 23 C -0.099 4.099 24 C -0.108 4.108 25 C -0.133 4.133 26 C -0.114 4.114 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.129 0.871 33 H 0.269 0.731 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.038 0.962 37 H 0.042 0.958 38 H 0.031 0.969 39 H 0.077 0.923 40 H 0.030 0.970 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.109 0.891 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.453 -1.782 -8.350 10.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.074 4.074 4 C -0.158 4.158 5 C 0.278 3.722 6 O -0.480 6.480 7 N -0.133 5.133 8 C -0.451 4.451 9 H 0.102 0.898 10 C -0.157 4.157 11 N -0.499 5.499 12 Si 0.740 3.260 13 H -0.199 1.199 14 H -0.211 1.211 15 H -0.196 1.196 16 C -0.002 4.002 17 C -0.025 4.025 18 O -0.284 6.284 19 C -0.066 4.066 20 C -0.014 4.014 21 C -0.055 4.055 22 C -0.146 4.146 23 C -0.099 4.099 24 C -0.164 4.164 25 C -0.152 4.152 26 C -0.132 4.132 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.147 0.853 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.127 0.873 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.120 -1.526 -8.562 10.635 hybrid contribution -0.242 0.239 1.116 1.167 sum -6.362 -1.287 -7.446 9.878 Atomic orbital electron populations 1.21804 0.95171 1.01212 1.02294 1.20495 0.95846 0.92808 1.02457 1.20828 0.99391 0.94950 0.92214 1.23135 0.99117 0.96211 0.97306 1.18415 0.82988 0.86935 0.83812 1.90728 1.59972 1.66717 1.30625 1.43164 1.55577 1.09493 1.05086 1.19172 1.04818 1.28493 0.92661 0.89832 1.25377 0.93791 0.96307 1.00192 1.69878 1.01733 1.44010 1.34268 0.86222 0.78034 0.79056 0.82658 1.19890 1.21097 1.19625 1.21324 0.93503 0.81664 1.03690 1.23037 0.94946 0.98063 0.86478 1.88122 1.39951 1.61485 1.38831 1.22634 0.89369 0.93343 1.01232 1.18580 0.93178 0.96939 0.92721 1.20949 0.96426 0.94569 0.93594 1.20704 0.97427 1.00759 0.95686 1.19749 0.93449 0.99807 0.96852 1.20710 1.01997 0.99070 0.94651 1.20646 0.96201 1.01178 0.97135 1.21053 0.97370 0.99995 0.94758 0.92784 0.92420 0.92514 0.91396 0.90925 0.85331 0.92073 0.87788 0.91205 0.94429 0.93936 0.95020 0.90451 0.95181 0.87062 0.87189 0.92014 0.92238 0.92074 0.87301 0.86977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.84 37.16 0.37 -1.47 16 2 C -0.08 -1.12 6.08 -27.88 -0.17 -1.29 16 3 C -0.07 -1.29 4.76 -102.17 -0.49 -1.77 16 4 C -0.14 -2.88 8.93 -37.53 -0.34 -3.22 16 5 C 0.49 11.83 7.40 -13.05 -0.10 11.74 16 6 O -0.59 -14.90 11.86 5.14 0.06 -14.83 16 7 N -0.42 -10.51 2.44 -116.47 -0.28 -10.80 16 8 C -0.32 -8.26 8.05 -15.05 -0.12 -8.38 16 9 H 0.08 2.08 6.98 -52.48 -0.37 1.72 16 10 C 0.05 1.26 4.95 -17.44 -0.09 1.17 16 11 N -0.86 -22.93 11.66 55.50 0.65 -22.28 16 12 Si 0.91 19.93 29.59 -169.99 -5.03 14.90 16 13 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 14 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 16 C 0.12 2.94 5.26 -4.05 -0.02 2.92 16 17 C 0.05 1.11 6.24 37.16 0.23 1.35 16 18 O -0.37 -7.94 10.44 -35.23 -0.37 -8.30 16 19 C 0.03 0.52 11.01 101.05 1.11 1.63 16 20 C -0.01 -0.26 3.85 -105.05 -0.40 -0.67 16 21 C -0.04 -0.71 6.96 -39.10 -0.27 -0.99 16 22 C -0.13 -2.21 9.68 -39.65 -0.38 -2.60 16 23 C -0.10 -1.56 5.89 -104.49 -0.62 -2.18 16 24 C -0.11 -1.31 10.00 36.01 0.36 -0.95 16 25 C -0.13 -2.12 9.68 -39.65 -0.38 -2.50 16 26 C -0.11 -1.94 9.51 -39.10 -0.37 -2.31 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.69 6.03 -51.93 -0.31 0.38 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 32 H 0.13 2.63 6.59 -52.48 -0.35 2.29 16 33 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.10 2.68 5.81 -51.93 -0.30 2.38 16 35 H 0.07 1.69 7.59 -51.93 -0.39 1.30 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.11 2.24 8.05 -52.49 -0.42 1.82 16 42 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 45 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 46 H 0.11 1.45 8.06 -52.48 -0.42 1.02 16 47 H 0.11 1.72 6.22 -52.49 -0.33 1.39 16 LS Contribution 384.56 15.07 5.80 5.80 Total: -1.00 -29.58 384.56 -8.37 -37.95 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -7.51 Total: 7.09 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -1.68 Total: -9.52 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.36 Total: -33.08 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.31 Total: -23.14 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.58 -8.37 -37.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837234829.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.598 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds