Wall clock time and date at job start Tue Mar 31 2020 12:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47194 * 2 1 4 4 C 1.34974 * 120.00201 * 95.00171 * 3 2 1 5 5 C 1.46233 * 119.99987 * 179.97438 * 4 3 2 6 6 O 1.21756 * 120.00198 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99948 * 179.97438 * 5 4 3 8 8 C 1.36715 * 120.00088 * 0.02562 * 7 5 4 9 9 H 1.08006 * 119.99633 * 317.95150 * 8 7 5 10 10 C 1.39122 * 120.00334 * 137.95848 * 8 7 5 11 11 N 1.31326 * 119.99787 * 342.13857 * 10 8 7 12 12 Si 1.86803 * 119.99975 * 162.14487 * 10 8 7 13 13 H 1.48493 * 109.47606 * 59.99821 * 12 10 8 14 14 H 1.48498 * 109.46956 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46952 * 299.99503 * 12 10 8 16 16 C 1.46493 * 120.00286 * 179.97438 * 7 5 4 17 17 C 1.53000 * 109.46893 * 84.47599 * 16 7 5 18 18 O 1.42892 * 109.47344 * 65.00418 * 17 16 7 19 19 C 1.42896 * 114.00386 * 180.02562 * 18 17 16 20 20 C 1.47149 * 119.99708 * 274.99814 * 3 2 1 21 21 C 1.39881 * 120.17197 * 244.99745 * 20 3 2 22 22 C 1.37873 * 119.82035 * 179.97438 * 21 20 3 23 23 C 1.38418 * 120.17671 * 0.27981 * 22 21 20 24 24 C 1.50700 * 119.82774 * 179.72328 * 23 22 21 25 25 C 1.38417 * 120.34593 * 359.44378 * 23 22 21 26 26 C 1.37875 * 120.17921 * 0.55457 * 25 23 22 27 27 H 1.08996 * 109.46967 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46849 * 299.99877 * 1 2 3 29 29 H 1.08997 * 109.46993 * 60.00340 * 1 2 3 30 30 H 1.09000 * 109.47124 * 239.99401 * 2 1 3 31 31 H 1.09003 * 109.47042 * 120.00128 * 2 1 3 32 32 H 1.08004 * 120.00293 * 359.97438 * 4 3 2 33 33 H 0.97003 * 119.99453 * 180.02562 * 11 10 8 34 34 H 1.08994 * 109.47728 * 204.47813 * 16 7 5 35 35 H 1.09000 * 109.47019 * 324.47856 * 16 7 5 36 36 H 1.09003 * 109.47307 * 185.00690 * 17 16 7 37 37 H 1.08998 * 109.47031 * 304.99946 * 17 16 7 38 38 H 1.08996 * 109.47413 * 59.99694 * 19 18 17 39 39 H 1.09000 * 109.47613 * 179.97438 * 19 18 17 40 40 H 1.08996 * 109.47271 * 299.99972 * 19 18 17 41 41 H 1.08001 * 120.08727 * 359.96145 * 21 20 3 42 42 H 1.07995 * 119.91570 * 180.02562 * 22 21 20 43 43 H 1.08999 * 109.47172 * 89.99577 * 24 23 22 44 44 H 1.08995 * 109.47162 * 209.99997 * 24 23 22 45 45 H 1.09000 * 109.46705 * 330.00236 * 24 23 22 46 46 H 1.08003 * 119.90734 * 180.25711 * 25 23 22 47 47 H 1.07997 * 120.09135 * 179.74738 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3534 2.0231 1.1644 5 6 2.8414 3.4016 1.1643 6 8 2.9585 4.0059 0.1138 7 7 3.1615 4.0032 2.3271 8 6 3.0305 3.3246 3.5067 9 1 2.1614 2.7075 3.6809 10 6 4.0165 3.4290 4.4825 11 7 5.2110 3.8722 4.1643 12 14 3.6414 2.9384 6.2455 13 1 3.2449 1.5080 6.2878 14 1 4.8499 3.1426 7.0839 15 1 2.5309 3.7755 6.7666 16 6 3.6509 5.3840 2.3270 17 6 2.4617 6.3465 2.3126 18 8 1.7218 6.2079 3.5271 19 6 0.5833 7.0669 3.6156 20 6 2.1729 2.1514 -1.2695 21 6 3.4380 2.5464 -1.7170 22 6 3.5613 3.2302 -2.9079 23 6 2.4371 3.5310 -3.6572 24 6 2.5804 4.2841 -4.9546 25 6 1.1824 3.1385 -3.2240 26 6 1.0422 2.4541 -2.0354 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.2499 1.4870 2.0963 33 1 5.8986 3.9446 4.8447 34 1 4.2482 5.5579 3.2220 35 1 4.2649 5.5518 1.4422 36 1 2.8241 7.3706 2.2228 37 1 1.8164 6.1141 1.4654 38 1 -0.1009 6.8490 2.7955 39 1 0.0756 6.9008 4.5657 40 1 0.9064 8.1060 3.5527 41 1 4.3157 2.3166 -1.1311 42 1 4.5373 3.5356 -3.2550 43 1 2.7139 3.5764 -5.7727 44 1 1.6838 4.8783 -5.1308 45 1 3.4474 4.9424 -4.8986 46 1 0.3103 3.3733 -3.8163 47 1 0.0622 2.1522 -1.6967 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837234829.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:48 Heat of formation + Delta-G solvation = -53.129123 kcal Electronic energy + Delta-G solvation = -27448.890857 eV Core-core repulsion = 23789.667285 eV Total energy + Delta-G solvation = -3659.223572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.88528 -39.81198 -38.54963 -36.94492 -36.22090 -33.52797 -32.97087 -31.92075 -31.55653 -30.38967 -27.64953 -27.27127 -26.51092 -25.22956 -23.57231 -23.34995 -22.43465 -21.18199 -20.04926 -18.69389 -17.99424 -17.17498 -16.96140 -16.60298 -16.26645 -16.17199 -16.00147 -15.81823 -15.46324 -15.09879 -14.88270 -14.71595 -14.40929 -14.26278 -14.13573 -13.66573 -13.59480 -13.29941 -13.15805 -12.97963 -12.88425 -12.87265 -12.67584 -12.56171 -12.46188 -12.32471 -12.13113 -11.99520 -11.82066 -11.74644 -11.43986 -10.96314 -10.58087 -10.37731 -9.96691 -9.62572 -9.26159 -8.83008 -8.23853 -5.98141 0.24462 0.71641 0.90949 1.45292 1.50729 1.57272 2.34176 2.68435 2.94678 3.01243 3.07550 3.27826 3.82418 4.05194 4.07528 4.17488 4.22599 4.23079 4.35504 4.38582 4.50018 4.50273 4.52825 4.59785 4.62492 4.66345 4.69055 4.77797 4.87071 4.88278 4.89797 4.92577 5.02132 5.07322 5.13132 5.30233 5.31507 5.32809 5.41670 5.47656 5.50066 5.67950 5.78110 5.83391 5.91012 6.09699 6.31341 6.38029 6.47997 7.21248 7.70840 8.13198 8.79550 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012454 B = 0.004565 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.807481 B = 6132.312961 C = 6963.032458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 C -0.032 4.032 4 C -0.183 4.183 5 C 0.481 3.519 6 O -0.609 6.609 7 N -0.434 5.434 8 C -0.331 4.331 9 H 0.084 0.916 10 C 0.008 3.992 11 N -0.897 5.897 12 Si 0.976 3.024 13 H -0.261 1.261 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.124 3.876 17 C 0.067 3.933 18 O -0.398 6.398 19 C 0.026 3.974 20 C -0.043 4.043 21 C -0.061 4.061 22 C -0.141 4.141 23 C -0.098 4.098 24 C -0.105 4.105 25 C -0.136 4.136 26 C -0.117 4.117 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.128 0.872 33 H 0.269 0.731 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.029 0.971 38 H 0.037 0.963 39 H 0.094 0.906 40 H 0.052 0.948 41 H 0.085 0.915 42 H 0.121 0.879 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.142 0.858 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.705 -2.232 -9.527 13.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C -0.035 4.035 4 C -0.204 4.204 5 C 0.274 3.726 6 O -0.498 6.498 7 N -0.151 5.151 8 C -0.460 4.460 9 H 0.102 0.898 10 C -0.195 4.195 11 N -0.535 5.535 12 Si 0.800 3.200 13 H -0.186 1.186 14 H -0.210 1.210 15 H -0.198 1.198 16 C 0.000 4.000 17 C -0.011 4.011 18 O -0.317 6.317 19 C -0.071 4.071 20 C -0.043 4.043 21 C -0.079 4.079 22 C -0.159 4.159 23 C -0.098 4.098 24 C -0.162 4.162 25 C -0.153 4.153 26 C -0.135 4.135 27 H 0.100 0.900 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.146 0.854 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.048 0.952 38 H 0.056 0.944 39 H 0.113 0.887 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.139 0.861 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.160 0.840 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.387 -1.984 -9.748 13.012 hybrid contribution 0.414 0.383 1.261 1.381 sum -7.973 -1.602 -8.487 11.755 Atomic orbital electron populations 1.21767 0.93132 1.03030 1.02023 1.20648 0.97436 0.90081 1.03598 1.21337 0.94682 0.96296 0.91142 1.22938 1.03724 0.95213 0.98505 1.18962 0.82219 0.88087 0.83367 1.90695 1.60560 1.67545 1.30995 1.43329 1.56430 1.09959 1.05404 1.19342 1.04844 1.28716 0.93058 0.89830 1.26136 0.93395 0.96333 1.03594 1.69988 1.02585 1.45621 1.35274 0.85256 0.77544 0.79190 0.77967 1.18599 1.20982 1.19762 1.21200 0.94533 0.82484 1.01808 1.22781 0.93675 0.98451 0.86149 1.88056 1.41682 1.63326 1.38602 1.22881 0.87942 0.93776 1.02457 1.18771 0.93730 0.98418 0.93412 1.20888 0.96018 0.96330 0.94691 1.20942 0.98897 1.00638 0.95424 1.20216 0.92854 0.98881 0.97899 1.20770 1.02984 0.99351 0.93071 1.21076 0.97388 1.00036 0.96840 1.21315 0.97406 0.99807 0.95002 0.89959 0.93289 0.92172 0.89845 0.90185 0.85450 0.92144 0.89785 0.92775 0.91789 0.95235 0.94412 0.88711 0.92927 0.89641 0.86142 0.89894 0.90653 0.91752 0.84049 0.85214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.84 71.98 0.71 -2.48 16 2 C -0.08 -2.17 6.08 29.85 0.18 -1.98 16 3 C -0.03 -1.16 4.76 -18.27 -0.09 -1.25 16 4 C -0.18 -7.99 8.93 23.60 0.21 -7.78 16 5 C 0.48 24.46 7.40 86.32 0.64 25.10 16 6 O -0.61 -31.97 11.86 -4.53 -0.05 -32.02 16 7 N -0.43 -22.90 2.44 -640.59 -1.57 -24.47 16 8 C -0.33 -17.51 8.05 84.14 0.68 -16.83 16 9 H 0.08 4.30 6.98 -2.91 -0.02 4.28 16 10 C 0.01 0.42 4.95 84.98 0.42 0.84 16 11 N -0.90 -49.50 11.66 21.69 0.25 -49.24 16 12 Si 0.98 41.47 29.59 68.60 2.03 43.50 16 13 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 14 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 15 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 16 C 0.12 6.25 5.26 86.38 0.45 6.71 16 17 C 0.07 2.90 6.24 71.98 0.45 3.35 16 18 O -0.40 -17.28 10.44 -148.98 -1.56 -18.84 16 19 C 0.03 0.80 11.01 113.37 1.25 2.05 16 20 C -0.04 -1.62 3.85 -20.14 -0.08 -1.70 16 21 C -0.06 -2.42 6.96 22.58 0.16 -2.26 16 22 C -0.14 -4.89 9.68 22.23 0.22 -4.67 16 23 C -0.10 -2.93 5.89 -19.78 -0.12 -3.05 16 24 C -0.11 -2.23 10.00 71.24 0.71 -1.52 16 25 C -0.14 -3.95 9.68 22.23 0.22 -3.74 16 26 C -0.12 -3.82 9.51 22.58 0.21 -3.60 16 27 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 1.30 6.03 -2.39 -0.01 1.29 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.08 2.06 8.03 -2.39 -0.02 2.04 16 32 H 0.13 5.45 6.59 -2.91 -0.02 5.43 16 33 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 34 H 0.08 4.56 5.81 -2.39 -0.01 4.54 16 35 H 0.05 2.80 7.59 -2.39 -0.02 2.78 16 36 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.03 1.33 8.14 -2.39 -0.02 1.32 16 38 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.09 3.72 8.05 -2.91 -0.02 3.69 16 42 H 0.12 3.76 8.06 -2.91 -0.02 3.74 16 43 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.07 1.38 8.08 -2.39 -0.02 1.36 16 45 H 0.06 1.34 8.08 -2.39 -0.02 1.32 16 46 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 47 H 0.13 3.66 6.22 -2.91 -0.02 3.64 16 Total: -1.00 -66.69 384.56 6.28 -60.42 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: 0.94 Total: 33.48 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 6.22 Total: -12.82 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -1.31 Total: -73.71 kcal Atomic # 8 Polarization: -49.25 SS G_CDS: -1.61 Total: -50.86 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -66.69 6.28 -60.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837234829.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.288 kcal (2) G-P(sol) polarization free energy of solvation -66.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds