Wall clock time and date at job start Tue Mar 31 2020 12:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47307 * 2 1 4 4 C 1.50697 * 109.47293 * 239.99314 * 2 1 3 5 5 H 1.07994 * 120.00024 * 240.00054 * 4 2 1 6 6 C 1.37878 * 119.99534 * 60.00729 * 4 2 1 7 7 N 1.31511 * 120.00123 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99796 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47172 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47200 * 119.99657 * 8 6 4 11 11 H 1.48502 * 109.47125 * 239.99847 * 8 6 4 12 12 C 1.53005 * 109.46648 * 119.99557 * 2 1 3 13 13 N 1.46494 * 109.47478 * 299.99857 * 12 2 1 14 14 C 1.34773 * 120.00323 * 180.02562 * 13 12 2 15 15 O 1.21285 * 119.99988 * 0.02562 * 14 13 12 16 16 C 1.50704 * 120.00120 * 180.02562 * 14 13 12 17 17 O 1.42902 * 109.47038 * 179.97438 * 16 14 13 18 18 C 1.35895 * 116.99970 * 179.97438 * 17 16 14 19 19 C 1.38748 * 120.09186 * 0.02562 * 18 17 16 20 20 C 1.38006 * 119.87745 * 180.02562 * 19 18 17 21 21 C 1.38542 * 120.29202 * 359.97438 * 20 19 18 22 22 C 1.38266 * 119.93797 * 0.02562 * 21 20 19 23 23 C 1.38416 * 119.90274 * 0.02562 * 22 21 20 24 24 C 1.51383 * 109.75351 * 180.02562 * 22 21 20 25 25 C 1.54339 * 105.17324 * 342.80716 * 24 22 21 26 26 C 1.51698 * 130.24225 * 179.84274 * 21 20 19 27 27 H 1.08997 * 109.46908 * 300.00692 * 1 2 3 28 28 H 1.09001 * 109.46664 * 60.00278 * 1 2 3 29 29 H 1.08992 * 109.47059 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47383 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47032 * 299.99497 * 3 2 1 32 32 H 1.09004 * 109.47341 * 59.99913 * 3 2 1 33 33 H 0.97006 * 120.00032 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.46801 * 179.97438 * 12 2 1 35 35 H 1.08997 * 109.47298 * 60.00094 * 12 2 1 36 36 H 0.97001 * 119.99808 * 0.02562 * 13 12 2 37 37 H 1.09006 * 109.47032 * 60.00060 * 16 14 13 38 38 H 1.08997 * 109.46963 * 300.00031 * 16 14 13 39 39 H 1.08007 * 120.06382 * 0.02562 * 19 18 17 40 40 H 1.08006 * 119.85283 * 180.02562 * 20 19 18 41 41 H 1.07995 * 119.91041 * 180.02562 * 23 22 21 42 42 H 1.09000 * 110.30267 * 223.87989 * 24 22 21 43 43 H 1.08997 * 110.38024 * 101.77648 * 24 22 21 44 44 H 1.09002 * 110.82153 * 144.59302 * 25 24 22 45 45 H 1.09002 * 110.82354 * 267.94058 * 25 24 22 46 46 H 1.09003 * 110.25235 * 78.27189 * 26 21 20 47 47 H 1.08997 * 110.49495 * 316.02724 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2395 -2.4826 7 7 0.9430 0.8296 -2.6034 8 14 2.3227 -1.1197 -4.0078 9 1 3.1485 -2.2859 -3.6035 10 1 1.1680 -1.5868 -4.8164 11 1 3.1475 -0.1860 -4.8159 12 6 2.0399 -0.7212 1.2494 13 7 1.5516 -0.0305 2.4455 14 6 1.8776 -0.4906 3.6696 15 8 2.5755 -1.4762 3.7810 16 6 1.3747 0.2196 4.9000 17 8 1.8511 -0.4540 6.0669 18 6 1.4860 0.0625 7.2696 19 6 0.6852 1.1942 7.3266 20 6 0.3175 1.7153 8.5504 21 6 0.7440 1.1131 9.7230 22 6 1.5421 -0.0146 9.6688 23 6 1.9134 -0.5390 8.4428 24 6 1.8694 -0.4777 11.0724 25 6 1.5540 0.7301 11.9801 26 6 0.4828 1.4894 11.1691 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 0.7084 1.1608 -3.4844 34 1 3.1299 -0.7216 1.2492 35 1 1.6766 -1.7488 1.2495 36 1 0.9937 0.7579 2.3564 37 1 0.2847 0.2188 4.9000 38 1 1.7373 1.2475 4.8999 39 1 0.3502 1.6664 6.4148 40 1 -0.3063 2.5960 8.5943 41 1 2.5364 -1.4201 8.4004 42 1 2.9243 -0.7417 11.1472 43 1 1.2467 -1.3294 11.3461 44 1 1.1531 0.4002 12.9385 45 1 2.4402 1.3480 12.1247 46 1 -0.5153 1.1688 11.4681 47 1 0.5933 2.5646 11.3097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837884483.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:34 Heat of formation + Delta-G solvation = -61.731371 kcal Electronic energy + Delta-G solvation = -25577.319970 eV Core-core repulsion = 21917.723376 eV Total energy + Delta-G solvation = -3659.596593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.71198 -39.53936 -38.35595 -36.36907 -34.96909 -33.37732 -31.73403 -31.02653 -29.08594 -28.58007 -27.03853 -25.77629 -25.52606 -24.60016 -23.05586 -21.21596 -21.09126 -20.13376 -18.86350 -18.01727 -17.18960 -16.39159 -16.08588 -15.90362 -15.77223 -15.39086 -15.00305 -14.65429 -14.45118 -14.36674 -13.62761 -13.36148 -13.19563 -13.07038 -12.96982 -12.56723 -12.46722 -12.24979 -12.18577 -11.78921 -11.55707 -11.51039 -11.39051 -11.24289 -10.91193 -10.88108 -10.72622 -10.68996 -10.43576 -10.23480 -9.68837 -9.62803 -9.31180 -9.00430 -8.82512 -8.53807 -8.38144 -8.18964 -6.05709 -4.15674 1.10841 1.23242 2.66438 2.87044 3.25374 3.34171 3.38986 3.50902 3.83941 4.22675 4.28040 4.37939 4.61484 4.66043 4.76121 4.86768 5.00348 5.00616 5.01457 5.09534 5.21369 5.23406 5.37112 5.39429 5.47685 5.58168 5.63157 5.81257 5.93269 6.07550 6.15445 6.18146 6.26962 6.43024 6.44786 6.53320 6.70512 6.76665 6.86810 6.92739 6.96755 7.24107 7.30870 7.50826 7.66028 7.92023 7.96505 8.09901 8.33930 8.56061 8.85165 9.50412 10.95784 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.042786 B = 0.001990 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.257448 B =14068.824520 C =14502.608342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.505 4.505 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.133 3.867 13 N -0.712 5.712 14 C 0.506 3.494 15 O -0.529 6.529 16 C 0.040 3.960 17 O -0.287 6.287 18 C 0.135 3.865 19 C -0.210 4.210 20 C -0.066 4.066 21 C -0.142 4.142 22 C -0.059 4.059 23 C -0.139 4.139 24 C -0.082 4.082 25 C -0.121 4.121 26 C -0.076 4.076 27 H 0.006 0.994 28 H 0.086 0.914 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.086 0.914 32 H 0.006 0.994 33 H 0.260 0.740 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.399 0.601 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.130 0.870 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.002 4.386 25.173 25.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 C -0.189 4.189 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.011 3.989 13 N -0.365 5.365 14 C 0.290 3.710 15 O -0.405 6.405 16 C -0.038 4.038 17 O -0.199 6.199 18 C 0.089 3.911 19 C -0.229 4.229 20 C -0.084 4.084 21 C -0.142 4.142 22 C -0.059 4.059 23 C -0.157 4.157 24 C -0.119 4.119 25 C -0.158 4.158 26 C -0.113 4.113 27 H 0.025 0.975 28 H 0.105 0.895 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.105 0.895 32 H 0.025 0.975 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.234 0.766 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.149 0.851 40 H 0.140 0.860 41 H 0.148 0.852 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.443 3.599 25.038 25.413 hybrid contribution -0.162 0.196 -1.152 1.180 sum -2.606 3.795 23.886 24.326 Atomic orbital electron populations 1.21839 0.97690 0.99266 1.00116 1.18384 0.92869 0.92817 0.90505 1.21840 0.98665 0.98284 1.00113 1.21010 1.31451 1.12114 0.89795 0.92317 1.24885 0.94853 0.94934 0.98903 1.69808 1.36682 1.22785 1.23168 0.86505 0.78649 0.79758 0.82918 1.19734 1.21050 1.21054 1.21782 0.98333 0.95864 0.82898 1.46174 1.52839 1.32025 1.05443 1.19916 0.81630 0.85200 0.84265 1.90723 1.37343 1.25910 1.86557 1.22570 1.00258 0.96919 0.84091 1.86167 1.70285 1.52256 1.11201 1.18869 0.94221 0.92602 0.85399 1.21182 1.04042 0.98610 0.99064 1.20374 0.98409 0.98995 0.90638 1.20544 1.01001 0.97664 0.94969 1.20301 0.96455 0.95220 0.93972 1.19787 1.04718 1.02525 0.88715 1.21064 1.02208 0.98525 0.90134 1.22290 0.99011 0.96479 0.98047 1.21015 0.99375 1.00544 0.90378 0.97514 0.89520 0.95355 0.95360 0.89519 0.97520 0.93031 0.92463 0.92468 0.76585 0.89146 0.89140 0.85088 0.85952 0.85197 0.90461 0.89947 0.90574 0.90941 0.90545 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 2 C 0.05 1.24 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 4 C -0.51 -13.05 8.01 -34.44 -0.28 -13.32 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.89 -23.26 9.35 55.43 0.52 -22.74 16 8 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 12 C 0.13 2.78 4.50 -4.04 -0.02 2.76 16 13 N -0.71 -12.19 4.96 -60.30 -0.30 -12.48 16 14 C 0.51 8.75 7.91 -10.98 -0.09 8.67 16 15 O -0.53 -11.52 16.50 -14.36 -0.24 -11.76 16 16 C 0.04 0.52 5.22 36.01 0.19 0.71 16 17 O -0.29 -4.34 9.67 -39.32 -0.38 -4.72 16 18 C 0.13 1.74 6.68 -39.26 -0.26 1.48 16 19 C -0.21 -2.26 9.04 -39.48 -0.36 -2.62 16 20 C -0.07 -0.64 10.03 -39.55 -0.40 -1.03 16 21 C -0.14 -1.36 6.15 -104.01 -0.64 -2.00 16 22 C -0.06 -0.61 6.13 -104.21 -0.64 -1.25 16 23 C -0.14 -1.67 9.98 -39.38 -0.39 -2.07 16 24 C -0.08 -0.60 6.77 -26.85 -0.18 -0.79 16 25 C -0.12 -0.72 7.07 -25.33 -0.18 -0.90 16 26 C -0.08 -0.52 6.79 -26.70 -0.18 -0.70 16 27 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 28 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 32 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 33 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.40 5.91 6.16 -40.82 -0.25 5.65 16 37 H 0.09 0.93 7.66 -51.93 -0.40 0.54 16 38 H 0.09 0.93 7.66 -51.93 -0.40 0.54 16 39 H 0.13 1.15 6.31 -52.48 -0.33 0.82 16 40 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 41 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 374.69 15.07 5.65 5.65 Total: -1.00 -30.24 374.69 -10.10 -40.34 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.34 Total: 3.60 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -2.99 Total: -13.43 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.22 Total: -35.23 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.62 Total: -16.48 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.24 -10.10 -40.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837884483.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.388 kcal (2) G-P(sol) polarization free energy of solvation -30.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds