Wall clock time and date at job start Tue Mar 31 2020 12:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47307 * 2 1 4 4 C 1.50697 * 109.47293 * 239.99314 * 2 1 3 5 5 H 1.07994 * 120.00024 * 240.00054 * 4 2 1 6 6 C 1.37878 * 119.99534 * 60.00729 * 4 2 1 7 7 N 1.31511 * 120.00123 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99796 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47172 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47200 * 119.99657 * 8 6 4 11 11 H 1.48502 * 109.47125 * 239.99847 * 8 6 4 12 12 C 1.53005 * 109.46648 * 119.99557 * 2 1 3 13 13 N 1.46494 * 109.47478 * 299.99857 * 12 2 1 14 14 C 1.34773 * 120.00323 * 180.02562 * 13 12 2 15 15 O 1.21285 * 119.99988 * 0.02562 * 14 13 12 16 16 C 1.50704 * 120.00120 * 180.02562 * 14 13 12 17 17 O 1.42902 * 109.47038 * 179.97438 * 16 14 13 18 18 C 1.35895 * 116.99970 * 179.97438 * 17 16 14 19 19 C 1.38748 * 120.09186 * 0.02562 * 18 17 16 20 20 C 1.38006 * 119.87745 * 180.02562 * 19 18 17 21 21 C 1.38542 * 120.29202 * 359.97438 * 20 19 18 22 22 C 1.38266 * 119.93797 * 0.02562 * 21 20 19 23 23 C 1.38416 * 119.90274 * 0.02562 * 22 21 20 24 24 C 1.51383 * 109.75351 * 180.02562 * 22 21 20 25 25 C 1.54339 * 105.17324 * 342.80716 * 24 22 21 26 26 C 1.51698 * 130.24225 * 179.84274 * 21 20 19 27 27 H 1.08997 * 109.46908 * 300.00692 * 1 2 3 28 28 H 1.09001 * 109.46664 * 60.00278 * 1 2 3 29 29 H 1.08992 * 109.47059 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47383 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47032 * 299.99497 * 3 2 1 32 32 H 1.09004 * 109.47341 * 59.99913 * 3 2 1 33 33 H 0.97006 * 120.00032 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.46801 * 179.97438 * 12 2 1 35 35 H 1.08997 * 109.47298 * 60.00094 * 12 2 1 36 36 H 0.97001 * 119.99808 * 0.02562 * 13 12 2 37 37 H 1.09006 * 109.47032 * 60.00060 * 16 14 13 38 38 H 1.08997 * 109.46963 * 300.00031 * 16 14 13 39 39 H 1.08007 * 120.06382 * 0.02562 * 19 18 17 40 40 H 1.08006 * 119.85283 * 180.02562 * 20 19 18 41 41 H 1.07995 * 119.91041 * 180.02562 * 23 22 21 42 42 H 1.09000 * 110.30267 * 223.87989 * 24 22 21 43 43 H 1.08997 * 110.38024 * 101.77648 * 24 22 21 44 44 H 1.09002 * 110.82153 * 144.59302 * 25 24 22 45 45 H 1.09002 * 110.82354 * 267.94058 * 25 24 22 46 46 H 1.09003 * 110.25235 * 78.27189 * 26 21 20 47 47 H 1.08997 * 110.49495 * 316.02724 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2395 -2.4826 7 7 0.9430 0.8296 -2.6034 8 14 2.3227 -1.1197 -4.0078 9 1 3.1485 -2.2859 -3.6035 10 1 1.1680 -1.5868 -4.8164 11 1 3.1475 -0.1860 -4.8159 12 6 2.0399 -0.7212 1.2494 13 7 1.5516 -0.0305 2.4455 14 6 1.8776 -0.4906 3.6696 15 8 2.5755 -1.4762 3.7810 16 6 1.3747 0.2196 4.9000 17 8 1.8511 -0.4540 6.0669 18 6 1.4860 0.0625 7.2696 19 6 0.6852 1.1942 7.3266 20 6 0.3175 1.7153 8.5504 21 6 0.7440 1.1131 9.7230 22 6 1.5421 -0.0146 9.6688 23 6 1.9134 -0.5390 8.4428 24 6 1.8694 -0.4777 11.0724 25 6 1.5540 0.7301 11.9801 26 6 0.4828 1.4894 11.1691 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 0.7084 1.1608 -3.4844 34 1 3.1299 -0.7216 1.2492 35 1 1.6766 -1.7488 1.2495 36 1 0.9937 0.7579 2.3564 37 1 0.2847 0.2188 4.9000 38 1 1.7373 1.2475 4.8999 39 1 0.3502 1.6664 6.4148 40 1 -0.3063 2.5960 8.5943 41 1 2.5364 -1.4201 8.4004 42 1 2.9243 -0.7417 11.1472 43 1 1.2467 -1.3294 11.3461 44 1 1.1531 0.4002 12.9385 45 1 2.4402 1.3480 12.1247 46 1 -0.5153 1.1688 11.4681 47 1 0.5933 2.5646 11.3097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837884483.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:34 Heat of formation + Delta-G solvation = -77.125325 kcal Electronic energy + Delta-G solvation = -25577.987501 eV Core-core repulsion = 21917.723376 eV Total energy + Delta-G solvation = -3660.264125 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.59657 -40.75518 -39.39585 -38.06897 -35.68563 -35.07445 -32.91687 -32.40677 -30.12194 -29.31596 -27.86846 -27.55687 -27.35419 -26.21587 -23.79194 -22.27024 -21.66460 -21.32871 -20.62544 -19.00582 -18.42058 -17.75312 -17.44675 -16.92841 -16.75205 -16.46211 -16.39092 -15.89769 -15.78673 -15.35189 -14.87584 -14.65582 -14.54624 -14.36406 -14.00652 -13.69933 -13.51648 -13.38212 -13.19550 -13.09734 -12.85837 -12.70254 -12.58751 -12.45564 -12.26350 -12.19072 -12.14272 -12.00429 -11.64078 -11.49181 -11.38496 -11.30062 -10.91944 -10.68993 -10.40905 -10.03738 -9.77346 -8.99332 -8.03403 -6.18573 0.34314 0.43078 1.40424 1.44810 1.51502 1.52930 1.58597 2.44142 2.70434 2.73589 3.20374 3.56680 3.65038 3.68004 3.90057 4.05126 4.08834 4.16188 4.21941 4.37664 4.40036 4.41944 4.49354 4.50659 4.71037 4.75506 4.87968 4.97783 4.98218 5.04565 5.05924 5.06842 5.10277 5.19601 5.24741 5.31928 5.32901 5.37700 5.43050 5.54158 5.67477 5.67648 5.69210 5.79494 6.15999 6.21117 6.34973 6.43101 6.58386 6.85434 7.20201 7.49053 8.95545 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.042786 B = 0.001990 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.257448 B =14068.824520 C =14502.608342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 C -0.122 4.122 4 C -0.528 4.528 5 H 0.043 0.957 6 C 0.028 3.972 7 N -0.897 5.897 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.148 3.852 13 N -0.701 5.701 14 C 0.505 3.495 15 O -0.581 6.581 16 C 0.048 3.952 17 O -0.320 6.320 18 C 0.109 3.891 19 C -0.212 4.212 20 C -0.071 4.071 21 C -0.146 4.146 22 C -0.071 4.071 23 C -0.163 4.163 24 C -0.085 4.085 25 C -0.116 4.116 26 C -0.076 4.076 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.017 0.983 30 H 0.017 0.983 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.260 0.740 34 H 0.039 0.961 35 H 0.039 0.961 36 H 0.414 0.586 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.119 0.881 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.324 6.228 27.246 28.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.049 3.951 3 C -0.180 4.180 4 C -0.566 4.566 5 H 0.061 0.939 6 C -0.172 4.172 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.025 3.975 13 N -0.355 5.355 14 C 0.292 3.708 15 O -0.461 6.461 16 C -0.030 4.030 17 O -0.234 6.234 18 C 0.064 3.936 19 C -0.230 4.230 20 C -0.089 4.089 21 C -0.147 4.147 22 C -0.071 4.071 23 C -0.182 4.182 24 C -0.122 4.122 25 C -0.154 4.154 26 C -0.112 4.112 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.252 0.748 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.170 0.830 40 H 0.167 0.833 41 H 0.137 0.863 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.114 0.886 45 H 0.093 0.907 46 H 0.106 0.894 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.789 5.476 27.124 27.930 hybrid contribution 0.250 -0.384 -1.723 1.783 sum -3.539 5.092 25.402 26.148 Atomic orbital electron populations 1.21684 0.96866 0.98770 1.00660 1.18385 0.93463 0.93152 0.90054 1.21686 0.97963 0.97671 1.00656 1.21287 1.31631 1.12111 0.91589 0.93878 1.25432 0.95200 0.95631 1.00904 1.69902 1.36942 1.23227 1.23549 0.85726 0.78125 0.78716 0.80338 1.20176 1.20713 1.20725 1.21321 0.97157 0.95170 0.83897 1.45922 1.52811 1.32168 1.04563 1.20705 0.80353 0.84468 0.85323 1.90702 1.39680 1.28383 1.87322 1.22595 1.01861 0.97114 0.81421 1.86101 1.71383 1.53609 1.12304 1.19081 0.95903 0.94024 0.84585 1.21439 1.03277 0.97749 1.00540 1.20747 0.98253 0.99631 0.90229 1.21028 0.99981 0.97042 0.96601 1.20663 0.96379 0.95588 0.94458 1.19957 1.05572 1.02867 0.89756 1.21179 1.02583 0.99578 0.88876 1.22322 0.99029 0.95580 0.98421 1.21109 1.00174 1.01491 0.88468 0.93982 0.91838 0.96333 0.96339 0.91835 0.93989 0.93007 0.94236 0.94236 0.74813 0.85918 0.85921 0.82959 0.83311 0.86286 0.90220 0.89198 0.88567 0.90661 0.89433 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.23 8.08 71.98 0.58 -4.65 16 2 C 0.05 2.26 0.50 -52.93 -0.03 2.24 16 3 C -0.12 -5.23 8.08 71.98 0.58 -4.65 16 4 C -0.53 -27.69 8.01 25.60 0.21 -27.48 16 5 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 6 C 0.03 1.47 5.15 84.66 0.44 1.91 16 7 N -0.90 -47.15 9.35 21.45 0.20 -46.95 16 8 Si 0.94 42.50 29.54 68.60 2.03 44.53 16 9 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 12 C 0.15 6.22 4.50 86.38 0.39 6.60 16 13 N -0.70 -23.03 4.96 -463.07 -2.30 -25.32 16 14 C 0.51 17.09 7.91 87.66 0.69 17.78 16 15 O -0.58 -25.89 16.50 15.99 0.26 -25.62 16 16 C 0.05 1.14 5.22 71.24 0.37 1.51 16 17 O -0.32 -9.62 9.67 -73.33 -0.71 -10.33 16 18 C 0.11 2.76 6.68 22.48 0.15 2.91 16 19 C -0.21 -4.06 9.04 22.34 0.20 -3.86 16 20 C -0.07 -1.17 10.03 22.29 0.22 -0.95 16 21 C -0.15 -2.49 6.15 -19.47 -0.12 -2.61 16 22 C -0.07 -1.39 6.13 -19.60 -0.12 -1.51 16 23 C -0.16 -4.00 9.98 22.40 0.22 -3.78 16 24 C -0.09 -1.13 6.77 30.52 0.21 -0.93 16 25 C -0.12 -1.06 7.07 31.50 0.22 -0.84 16 26 C -0.08 -0.80 6.79 30.62 0.21 -0.59 16 27 H 0.04 1.46 6.86 -2.39 -0.02 1.44 16 28 H 0.06 3.05 6.07 -2.39 -0.01 3.03 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.06 3.05 6.07 -2.39 -0.01 3.03 16 32 H 0.04 1.45 6.86 -2.38 -0.02 1.44 16 33 H 0.26 13.15 8.31 -92.70 -0.77 12.38 16 34 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.41 11.00 6.16 -92.71 -0.57 10.43 16 37 H 0.12 2.11 7.66 -2.38 -0.02 2.10 16 38 H 0.12 2.12 7.66 -2.39 -0.02 2.10 16 39 H 0.15 2.11 6.31 -2.91 -0.02 2.09 16 40 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 41 H 0.12 2.99 8.06 -2.91 -0.02 2.97 16 42 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -67.70 374.69 4.31 -63.39 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.40 Total: 19.19 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 4.43 Total: -18.90 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: -2.10 Total: -72.27 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.45 Total: -35.95 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -67.70 4.31 -63.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837884483.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.738 kcal (2) G-P(sol) polarization free energy of solvation -67.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds