Wall clock time and date at job start Tue Mar 31 2020 12:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35706 * 117.00387 * 2 1 4 4 C 1.39019 * 119.91049 * 0.02562 * 3 2 1 5 5 C 1.37683 * 120.08959 * 180.02562 * 4 3 2 6 6 C 1.39756 * 119.91033 * 359.97438 * 5 4 3 7 7 C 1.47604 * 120.08823 * 180.02562 * 6 5 4 8 8 O 1.21582 * 119.99739 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99933 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99872 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47233 * 299.99500 * 11 10 9 13 13 C 1.52996 * 109.47328 * 59.99969 * 11 10 9 14 14 C 1.50706 * 109.46735 * 180.02562 * 11 10 9 15 15 H 1.07996 * 119.99928 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99611 * 179.97438 * 14 11 10 17 17 N 1.31511 * 120.00327 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99743 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46828 * 90.00241 * 18 16 14 20 20 H 1.48494 * 109.47178 * 209.99936 * 18 16 14 21 21 H 1.48500 * 109.47075 * 330.00183 * 18 16 14 22 22 C 1.39712 * 119.82313 * 0.27465 * 6 5 4 23 23 C 1.37724 * 119.91150 * 359.45133 * 22 6 5 24 24 C 1.50703 * 119.95843 * 180.29494 * 23 22 6 25 25 C 1.53005 * 117.49517 * 9.00086 * 24 23 22 26 26 C 1.53001 * 117.49740 * 300.34475 * 24 23 22 27 27 H 1.09004 * 109.47278 * 59.98868 * 1 2 3 28 28 H 1.08998 * 109.47649 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46764 * 299.99813 * 1 2 3 30 30 H 1.07998 * 119.95751 * 0.03703 * 4 3 2 31 31 H 1.07996 * 120.04399 * 179.97438 * 5 4 3 32 32 H 0.97000 * 119.99708 * 359.97438 * 9 7 6 33 33 H 1.09002 * 109.47391 * 59.99686 * 10 9 7 34 34 H 1.09001 * 109.46813 * 299.99742 * 10 9 7 35 35 H 1.09000 * 109.46986 * 60.00203 * 12 11 10 36 36 H 1.08993 * 109.47662 * 180.02562 * 12 11 10 37 37 H 1.09002 * 109.47075 * 300.00932 * 12 11 10 38 38 H 1.08992 * 109.47554 * 59.99639 * 13 11 10 39 39 H 1.09004 * 109.47108 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.46870 * 299.99783 * 13 11 10 41 41 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 42 42 H 1.08003 * 120.04182 * 179.71941 * 22 6 5 43 43 H 1.08995 * 115.55174 * 154.67059 * 24 23 22 44 44 H 1.08995 * 117.49866 * 359.97438 * 25 24 23 45 45 H 1.09003 * 117.49646 * 145.02409 * 25 24 23 46 46 H 1.08995 * 117.49918 * 214.98004 * 26 24 23 47 47 H 1.09005 * 117.49593 * 359.96952 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2862 2.3739 0.0005 5 6 1.9075 3.6026 0.0000 6 6 3.3031 3.6778 -0.0005 7 6 3.9732 4.9929 -0.0005 8 8 5.1874 5.0564 -0.0015 9 7 3.2392 6.1233 0.0005 10 6 3.9044 7.4286 -0.0001 11 6 2.8507 8.5379 0.0020 12 6 1.9746 8.4115 -1.2460 13 6 1.9784 8.4105 1.2525 14 6 3.5349 9.8806 0.0008 15 1 4.6134 9.9370 -0.0008 16 6 2.7840 11.0370 0.0017 17 7 1.4707 10.9682 0.0032 18 14 3.6322 12.7014 0.0010 19 1 3.8553 13.1425 -1.3994 20 1 2.7774 13.6928 0.7020 21 1 4.9380 12.5918 0.6995 22 6 4.0621 2.5049 -0.0063 23 6 3.4331 1.2797 -0.0001 24 6 4.2509 0.0138 0.0004 25 6 5.7610 0.1485 0.2061 26 6 5.2053 -0.2110 -1.1741 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2079 2.3150 0.0016 31 1 1.3173 4.5069 0.0000 32 1 2.2706 6.0725 0.0009 33 1 4.5262 7.5192 -0.8907 34 1 4.5282 7.5188 0.8893 35 1 1.4797 7.4403 -1.2456 36 1 1.2242 9.2019 -1.2448 37 1 2.5960 8.5021 -2.1369 38 1 2.6025 8.5005 2.1416 39 1 1.2280 9.2011 1.2542 40 1 1.4835 7.4393 1.2529 41 1 0.9424 11.7817 0.0035 42 1 5.1408 2.5589 -0.0114 43 1 3.7611 -0.8621 0.4257 44 1 6.1630 1.1527 0.3407 45 1 6.2648 -0.6391 0.7665 46 1 5.3437 -1.2349 -1.5212 47 1 5.2413 0.5565 -1.9474 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837892481.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:33 Heat of formation + Delta-G solvation = -30.604410 kcal Electronic energy + Delta-G solvation = -26365.091182 eV Core-core repulsion = 22706.844355 eV Total energy + Delta-G solvation = -3658.246827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.72029 -39.26258 -37.97107 -36.58182 -36.15346 -33.34626 -31.29138 -30.71790 -30.24759 -27.70840 -25.74199 -25.69005 -25.02801 -24.08769 -22.99960 -22.39952 -20.92253 -19.81332 -18.89484 -18.34681 -17.30176 -16.77702 -16.03943 -15.83179 -15.38595 -15.04319 -14.79562 -14.71708 -14.60744 -14.46915 -13.72129 -13.46053 -13.11047 -12.96964 -12.89695 -12.61998 -12.28901 -12.20974 -11.91608 -11.56751 -11.43601 -11.26104 -11.21150 -11.05940 -10.89504 -10.83372 -10.70017 -10.48293 -10.39712 -10.21140 -9.64734 -9.63036 -9.27023 -8.96050 -8.80085 -8.50284 -8.37161 -8.15697 -6.02957 -4.12897 0.89157 1.14532 2.96998 2.99063 3.28104 3.35087 3.39005 3.68830 3.74417 4.01216 4.29583 4.39832 4.54609 4.70790 4.82399 4.84757 4.87631 4.91655 5.05740 5.12096 5.17797 5.19841 5.23952 5.41783 5.51950 5.67995 5.78890 5.88079 5.97682 6.09911 6.16304 6.20603 6.32661 6.37298 6.49021 6.53195 6.77431 6.80263 6.93045 7.00951 7.01738 7.10516 7.34365 7.54276 7.68643 7.99734 8.04292 8.14761 8.37610 8.68834 8.87924 9.52975 10.98545 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022342 B = 0.002728 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.924344 B =10260.334486 C =11246.119836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.311 6.311 3 C 0.152 3.848 4 C -0.212 4.212 5 C -0.049 4.049 6 C -0.159 4.159 7 C 0.550 3.450 8 O -0.552 6.552 9 N -0.711 5.711 10 C 0.131 3.869 11 C 0.056 3.944 12 C -0.131 4.131 13 C -0.131 4.131 14 C -0.506 4.506 15 H 0.058 0.942 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.027 4.027 23 C -0.094 4.094 24 C -0.104 4.104 25 C -0.179 4.179 26 C -0.171 4.171 27 H 0.057 0.943 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.396 0.604 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.005 0.995 36 H 0.086 0.914 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.086 0.914 40 H 0.005 0.995 41 H 0.260 0.740 42 H 0.143 0.857 43 H 0.116 0.884 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.094 -22.348 -0.264 22.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.106 3.894 4 C -0.231 4.231 5 C -0.068 4.068 6 C -0.162 4.162 7 C 0.337 3.663 8 O -0.432 6.432 9 N -0.362 5.362 10 C 0.009 3.991 11 C 0.055 3.945 12 C -0.189 4.189 13 C -0.189 4.189 14 C -0.544 4.544 15 H 0.076 0.924 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.046 4.046 23 C -0.095 4.095 24 C -0.122 4.122 25 C -0.216 4.216 26 C -0.208 4.208 27 H 0.076 0.924 28 H 0.118 0.882 29 H 0.076 0.924 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.233 0.767 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.024 0.976 36 H 0.105 0.895 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.105 0.895 40 H 0.024 0.976 41 H 0.070 0.930 42 H 0.161 0.839 43 H 0.134 0.866 44 H 0.120 0.880 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.318 -22.322 -0.260 22.443 hybrid contribution -0.473 1.112 0.000 1.208 sum -2.791 -21.210 -0.261 21.394 Atomic orbital electron populations 1.23110 0.78258 1.04014 1.01673 1.86025 1.21418 1.26809 1.88106 1.18949 0.91447 0.84235 0.94778 1.21128 1.00223 0.91848 1.09905 1.21166 0.93526 0.97607 0.94502 1.19998 0.93526 0.94093 1.08617 1.18134 0.87024 0.84008 0.77158 1.90734 1.13561 1.87648 1.51217 1.46243 1.10365 1.06527 1.73043 1.21753 0.96439 0.80237 1.00656 1.18361 0.91433 0.91885 0.92818 1.21838 1.00815 0.98582 0.97641 1.21834 1.00812 0.98585 0.97643 1.20990 0.92969 0.89653 1.50807 0.92386 1.24877 0.94840 0.99007 0.94776 1.69798 1.04188 1.27891 1.50634 0.86568 0.79534 0.83647 0.78110 1.20710 1.21272 1.19884 1.20986 1.00809 0.89441 0.93339 1.18375 0.89853 0.94102 1.07191 1.20761 0.90810 0.96575 1.04088 1.23138 0.95150 1.03530 0.99783 1.23048 1.03155 1.02726 0.91821 0.92401 0.88193 0.92410 0.84769 0.85075 0.76736 0.92555 0.92547 0.97627 0.89532 0.95375 0.95357 0.89546 0.97610 0.93008 0.83901 0.86632 0.88029 0.88412 0.88565 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.13 9.65 -18.82 -0.18 -3.31 16 3 C 0.15 1.75 6.67 -39.02 -0.26 1.49 16 4 C -0.21 -2.32 9.01 -39.49 -0.36 -2.67 16 5 C -0.05 -0.62 9.53 -39.22 -0.37 -0.99 16 6 C -0.16 -2.39 5.87 -104.96 -0.62 -3.00 16 7 C 0.55 10.12 7.76 -12.44 -0.10 10.02 16 8 O -0.55 -11.89 16.34 5.29 0.09 -11.80 16 9 N -0.71 -13.05 4.91 -61.33 -0.30 -13.35 16 10 C 0.13 2.83 4.50 -4.04 -0.02 2.81 16 11 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 12 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 13 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 14 C -0.51 -13.24 8.01 -34.44 -0.28 -13.51 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 17 N -0.89 -23.51 9.35 55.43 0.52 -23.00 16 18 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.03 -0.38 8.83 -39.22 -0.35 -0.72 16 23 C -0.09 -1.16 5.62 -104.54 -0.59 -1.75 16 24 C -0.10 -1.09 5.74 -91.77 -0.53 -1.61 16 25 C -0.18 -1.69 9.86 -26.69 -0.26 -1.95 16 26 C -0.17 -1.59 10.16 -26.69 -0.27 -1.86 16 27 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 28 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 30 H 0.13 1.10 6.28 -52.49 -0.33 0.77 16 31 H 0.13 1.48 6.40 -52.49 -0.34 1.14 16 32 H 0.40 6.52 4.19 -40.82 -0.17 6.35 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 36 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 40 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 41 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 42 H 0.14 2.00 5.60 -52.48 -0.29 1.71 16 43 H 0.12 1.14 7.76 -51.93 -0.40 0.73 16 44 H 0.10 1.04 6.18 -51.93 -0.32 0.71 16 45 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 373.05 15.07 5.62 5.62 Total: -1.00 -29.58 373.05 -8.76 -38.34 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.91 Total: 6.84 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -2.57 Total: -15.03 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.22 Total: -36.35 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.10 Total: -15.11 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.58 -8.76 -38.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837892481.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.737 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds