Wall clock time and date at job start Tue Mar 31 2020 12:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35706 * 117.00387 * 2 1 4 4 C 1.39019 * 119.91049 * 0.02562 * 3 2 1 5 5 C 1.37683 * 120.08959 * 180.02562 * 4 3 2 6 6 C 1.39756 * 119.91033 * 359.97438 * 5 4 3 7 7 C 1.47604 * 120.08823 * 180.02562 * 6 5 4 8 8 O 1.21582 * 119.99739 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99933 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99872 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47233 * 299.99500 * 11 10 9 13 13 C 1.52996 * 109.47328 * 59.99969 * 11 10 9 14 14 C 1.50706 * 109.46735 * 180.02562 * 11 10 9 15 15 H 1.07996 * 119.99928 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99611 * 179.97438 * 14 11 10 17 17 N 1.31511 * 120.00327 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99743 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46828 * 90.00241 * 18 16 14 20 20 H 1.48494 * 109.47178 * 209.99936 * 18 16 14 21 21 H 1.48500 * 109.47075 * 330.00183 * 18 16 14 22 22 C 1.39712 * 119.82313 * 0.27465 * 6 5 4 23 23 C 1.37724 * 119.91150 * 359.45133 * 22 6 5 24 24 C 1.50703 * 119.95843 * 180.29494 * 23 22 6 25 25 C 1.53005 * 117.49517 * 9.00086 * 24 23 22 26 26 C 1.53001 * 117.49740 * 300.34475 * 24 23 22 27 27 H 1.09004 * 109.47278 * 59.98868 * 1 2 3 28 28 H 1.08998 * 109.47649 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46764 * 299.99813 * 1 2 3 30 30 H 1.07998 * 119.95751 * 0.03703 * 4 3 2 31 31 H 1.07996 * 120.04399 * 179.97438 * 5 4 3 32 32 H 0.97000 * 119.99708 * 359.97438 * 9 7 6 33 33 H 1.09002 * 109.47391 * 59.99686 * 10 9 7 34 34 H 1.09001 * 109.46813 * 299.99742 * 10 9 7 35 35 H 1.09000 * 109.46986 * 60.00203 * 12 11 10 36 36 H 1.08993 * 109.47662 * 180.02562 * 12 11 10 37 37 H 1.09002 * 109.47075 * 300.00932 * 12 11 10 38 38 H 1.08992 * 109.47554 * 59.99639 * 13 11 10 39 39 H 1.09004 * 109.47108 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.46870 * 299.99783 * 13 11 10 41 41 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 42 42 H 1.08003 * 120.04182 * 179.71941 * 22 6 5 43 43 H 1.08995 * 115.55174 * 154.67059 * 24 23 22 44 44 H 1.08995 * 117.49866 * 359.97438 * 25 24 23 45 45 H 1.09003 * 117.49646 * 145.02409 * 25 24 23 46 46 H 1.08995 * 117.49918 * 214.98004 * 26 24 23 47 47 H 1.09005 * 117.49593 * 359.96952 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2862 2.3739 0.0005 5 6 1.9075 3.6026 0.0000 6 6 3.3031 3.6778 -0.0005 7 6 3.9732 4.9929 -0.0005 8 8 5.1874 5.0564 -0.0015 9 7 3.2392 6.1233 0.0005 10 6 3.9044 7.4286 -0.0001 11 6 2.8507 8.5379 0.0020 12 6 1.9746 8.4115 -1.2460 13 6 1.9784 8.4105 1.2525 14 6 3.5349 9.8806 0.0008 15 1 4.6134 9.9370 -0.0008 16 6 2.7840 11.0370 0.0017 17 7 1.4707 10.9682 0.0032 18 14 3.6322 12.7014 0.0010 19 1 3.8553 13.1425 -1.3994 20 1 2.7774 13.6928 0.7020 21 1 4.9380 12.5918 0.6995 22 6 4.0621 2.5049 -0.0063 23 6 3.4331 1.2797 -0.0001 24 6 4.2509 0.0138 0.0004 25 6 5.7610 0.1485 0.2061 26 6 5.2053 -0.2110 -1.1741 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2079 2.3150 0.0016 31 1 1.3173 4.5069 0.0000 32 1 2.2706 6.0725 0.0009 33 1 4.5262 7.5192 -0.8907 34 1 4.5282 7.5188 0.8893 35 1 1.4797 7.4403 -1.2456 36 1 1.2242 9.2019 -1.2448 37 1 2.5960 8.5021 -2.1369 38 1 2.6025 8.5005 2.1416 39 1 1.2280 9.2011 1.2542 40 1 1.4835 7.4393 1.2529 41 1 0.9424 11.7817 0.0035 42 1 5.1408 2.5589 -0.0114 43 1 3.7611 -0.8621 0.4257 44 1 6.1630 1.1527 0.3407 45 1 6.2648 -0.6391 0.7665 46 1 5.3437 -1.2349 -1.5212 47 1 5.2413 0.5565 -1.9474 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837892481.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:32 Heat of formation + Delta-G solvation = -46.065402 kcal Electronic energy + Delta-G solvation = -26365.761621 eV Core-core repulsion = 22706.844355 eV Total energy + Delta-G solvation = -3658.917266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.69223 -40.57529 -38.83701 -38.11909 -37.28160 -35.06538 -32.91718 -31.75239 -31.36627 -28.42383 -27.57454 -27.44581 -26.75198 -24.98497 -24.14237 -23.20975 -21.90109 -21.04783 -20.65505 -19.24660 -18.60159 -17.79336 -17.63636 -16.74050 -16.62939 -16.46873 -16.25111 -16.16236 -15.54309 -15.40761 -14.91600 -14.77144 -14.63155 -14.50445 -14.01496 -13.90803 -13.67197 -13.20475 -13.11912 -12.90135 -12.82280 -12.69929 -12.60324 -12.30608 -12.26661 -12.13930 -12.01476 -11.86350 -11.69395 -11.49804 -11.32628 -11.24305 -10.95670 -10.70634 -10.40450 -10.04184 -9.86896 -9.14267 -8.02852 -6.18415 -0.15505 0.21212 1.42430 1.45340 1.53578 1.79847 2.23871 2.29392 2.48813 2.67768 3.11305 3.20844 3.47320 3.70395 3.76929 3.97028 4.03319 4.11438 4.20490 4.32935 4.40057 4.43087 4.44923 4.49553 4.51512 4.69071 4.77188 4.79683 4.84618 4.97020 4.99236 5.03889 5.03974 5.10956 5.18023 5.18281 5.23469 5.26409 5.33771 5.41553 5.54151 5.60487 5.66259 5.67037 6.14259 6.20147 6.32844 6.42818 6.62182 6.85206 7.24321 7.49225 8.96235 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022342 B = 0.002728 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.924344 B =10260.334486 C =11246.119836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.318 6.318 3 C 0.159 3.841 4 C -0.206 4.206 5 C -0.046 4.046 6 C -0.183 4.183 7 C 0.550 3.450 8 O -0.592 6.592 9 N -0.704 5.704 10 C 0.147 3.853 11 C 0.052 3.948 12 C -0.121 4.121 13 C -0.121 4.121 14 C -0.530 4.530 15 H 0.044 0.956 16 C 0.030 3.970 17 N -0.898 5.898 18 Si 0.945 3.055 19 H -0.279 1.279 20 H -0.282 1.282 21 H -0.277 1.277 22 C -0.035 4.035 23 C -0.103 4.103 24 C -0.112 4.112 25 C -0.180 4.180 26 C -0.165 4.165 27 H 0.068 0.932 28 H 0.122 0.878 29 H 0.068 0.932 30 H 0.167 0.833 31 H 0.145 0.855 32 H 0.407 0.593 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.036 0.964 36 H 0.065 0.935 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.065 0.935 40 H 0.036 0.964 41 H 0.261 0.739 42 H 0.131 0.869 43 H 0.125 0.875 44 H 0.087 0.913 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.936 -24.432 -0.282 24.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.231 6.231 3 C 0.112 3.888 4 C -0.224 4.224 5 C -0.065 4.065 6 C -0.187 4.187 7 C 0.339 3.661 8 O -0.475 6.475 9 N -0.356 5.356 10 C 0.023 3.977 11 C 0.051 3.949 12 C -0.179 4.179 13 C -0.179 4.179 14 C -0.569 4.569 15 H 0.062 0.938 16 C -0.170 4.170 17 N -0.537 5.537 18 Si 0.772 3.228 19 H -0.205 1.205 20 H -0.207 1.207 21 H -0.202 1.202 22 C -0.054 4.054 23 C -0.104 4.104 24 C -0.130 4.130 25 C -0.217 4.217 26 C -0.202 4.202 27 H 0.087 0.913 28 H 0.140 0.860 29 H 0.087 0.913 30 H 0.185 0.815 31 H 0.163 0.837 32 H 0.246 0.754 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.149 0.851 43 H 0.143 0.857 44 H 0.105 0.895 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.197 -24.423 -0.279 24.783 hybrid contribution 0.038 1.620 0.003 1.620 sum -4.160 -22.803 -0.276 23.181 Atomic orbital electron populations 1.23466 0.76026 1.05980 1.02686 1.86033 1.23669 1.25895 1.87454 1.19078 0.91327 0.85184 0.93213 1.21433 1.01804 0.90746 1.08465 1.21311 0.92342 0.99033 0.93833 1.19744 0.94715 0.92186 1.12033 1.18666 0.86605 0.85045 0.75742 1.90703 1.15445 1.88302 1.53040 1.46025 1.10797 1.05458 1.73285 1.21330 0.95766 0.81497 0.99074 1.18354 0.91802 0.91126 0.93571 1.21684 0.99964 0.99531 0.96740 1.21681 0.99964 0.99531 0.96748 1.21271 0.92625 0.91587 1.51369 0.93777 1.25435 0.95462 1.01511 0.94632 1.69894 1.04740 1.28458 1.50620 0.85764 0.78553 0.80520 0.77998 1.20488 1.20724 1.20169 1.20938 1.00399 0.90027 0.94065 1.18551 0.90836 0.94067 1.06937 1.20821 0.91043 0.96063 1.05097 1.23180 0.94741 1.03428 1.00306 1.23100 1.02250 1.03507 0.91330 0.91349 0.85977 0.91315 0.81516 0.83689 0.75414 0.94213 0.94234 0.94483 0.91640 0.96326 0.96301 0.91652 0.94469 0.92969 0.85095 0.85725 0.89459 0.86579 0.86540 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.32 -5.39 9.65 -90.27 -0.87 -6.26 16 3 C 0.16 3.28 6.67 22.63 0.15 3.43 16 4 C -0.21 -3.85 9.01 22.33 0.20 -3.65 16 5 C -0.05 -1.07 9.53 22.51 0.21 -0.86 16 6 C -0.18 -5.45 5.87 -20.08 -0.12 -5.57 16 7 C 0.55 20.55 7.76 86.72 0.67 21.22 16 8 O -0.59 -26.57 16.34 -3.97 -0.06 -26.63 16 9 N -0.70 -25.68 4.91 -466.20 -2.29 -27.97 16 10 C 0.15 6.45 4.50 86.38 0.39 6.84 16 11 C 0.05 2.43 0.50 -52.93 -0.03 2.40 16 12 C -0.12 -5.39 8.08 71.98 0.58 -4.81 16 13 C -0.12 -5.40 8.08 71.98 0.58 -4.81 16 14 C -0.53 -28.24 8.01 25.60 0.21 -28.04 16 15 H 0.04 2.41 7.74 -2.91 -0.02 2.38 16 16 C 0.03 1.55 5.15 84.66 0.44 1.99 16 17 N -0.90 -47.69 9.35 21.45 0.20 -47.49 16 18 Si 0.94 42.71 29.54 68.60 2.03 44.74 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 C -0.04 -0.99 8.83 22.50 0.20 -0.79 16 23 C -0.10 -2.42 5.62 -19.81 -0.11 -2.54 16 24 C -0.11 -2.19 5.74 -11.54 -0.07 -2.26 16 25 C -0.18 -3.26 9.86 30.62 0.30 -2.96 16 26 C -0.17 -2.87 10.16 30.62 0.31 -2.56 16 27 H 0.07 0.47 7.65 -2.39 -0.02 0.46 16 28 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.47 7.65 -2.39 -0.02 0.45 16 30 H 0.17 1.97 6.28 -2.91 -0.02 1.95 16 31 H 0.15 2.85 6.40 -2.91 -0.02 2.83 16 32 H 0.41 12.74 4.19 -92.71 -0.39 12.36 16 33 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.04 1.36 6.86 -2.39 -0.02 1.35 16 36 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 37 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.06 3.21 6.07 -2.38 -0.01 3.19 16 40 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 41 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 42 H 0.13 3.88 5.60 -2.91 -0.02 3.87 16 43 H 0.12 2.19 7.76 -2.39 -0.02 2.17 16 44 H 0.09 1.84 6.18 -2.39 -0.01 1.83 16 45 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -64.80 373.05 4.64 -60.17 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.60 Total: 25.19 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 5.03 Total: -21.74 kcal Atomic # 7 Polarization: -73.37 SS G_CDS: -2.09 Total: -75.46 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.94 Total: -32.89 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -64.80 4.64 -60.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837892481.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.101 kcal (2) G-P(sol) polarization free energy of solvation -64.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds