Wall clock time and date at job start Tue Mar 31 2020 11:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47350 * 2 1 4 4 C 1.53006 * 109.46889 * 120.00186 * 2 1 3 5 5 C 1.53000 * 109.46876 * 175.00068 * 4 2 1 6 6 H 1.08994 * 115.55262 * 29.32827 * 5 4 2 7 7 C 1.53000 * 117.51239 * 243.62468 * 5 4 2 8 8 C 1.52994 * 60.00257 * 252.52057 * 7 5 4 9 9 H 1.09005 * 117.51905 * 107.48119 * 8 7 5 10 10 N 1.46498 * 117.50262 * 252.51567 * 8 7 5 11 11 C 1.34773 * 120.00093 * 223.62301 * 10 8 7 12 12 O 1.21282 * 119.99966 * 359.97438 * 11 10 8 13 13 C 1.50701 * 120.00344 * 179.97438 * 11 10 8 14 14 C 1.50698 * 109.47470 * 179.97438 * 13 11 10 15 15 C 1.38320 * 119.96579 * 269.72257 * 14 13 11 16 16 C 1.38279 * 120.14060 * 179.76260 * 15 14 13 17 17 C 1.38121 * 120.06625 * 0.51151 * 16 15 14 18 18 C 1.38860 * 119.93146 * 359.74905 * 17 16 15 19 19 O 1.35755 * 120.06971 * 179.97438 * 18 17 16 20 20 C 1.34832 * 116.99667 * 354.48047 * 19 18 17 21 21 H 1.07995 * 120.00554 * 5.06358 * 20 19 18 22 22 C 1.38660 * 119.99633 * 185.05749 * 20 19 18 23 23 N 1.31556 * 120.00062 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 119.99886 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47255 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47163 * 120.00189 * 24 22 20 27 27 H 1.48499 * 109.47150 * 240.00303 * 24 22 20 28 28 C 1.38085 * 119.96634 * 89.99553 * 14 13 11 29 29 H 1.09003 * 109.47213 * 299.99759 * 1 2 3 30 30 H 1.09002 * 109.46933 * 59.99914 * 1 2 3 31 31 H 1.08998 * 109.47109 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46980 * 239.99657 * 2 1 3 33 33 H 1.08993 * 109.47304 * 300.00097 * 3 2 1 34 34 H 1.09003 * 109.46766 * 59.99966 * 3 2 1 35 35 H 1.09001 * 109.47174 * 179.97438 * 3 2 1 36 36 H 1.08993 * 109.46963 * 54.99818 * 4 2 1 37 37 H 1.09002 * 109.47141 * 294.99661 * 4 2 1 38 38 H 1.09006 * 117.49615 * 145.03320 * 7 5 4 39 39 H 1.08998 * 117.50260 * 0.02562 * 7 5 4 40 40 H 0.96997 * 119.99930 * 43.61885 * 10 8 7 41 41 H 1.08997 * 109.47235 * 59.99342 * 13 11 10 42 42 H 1.09003 * 109.46722 * 300.00013 * 13 11 10 43 43 H 1.08005 * 119.92873 * 359.97438 * 15 14 13 44 44 H 1.07997 * 119.97156 * 180.25668 * 16 15 14 45 45 H 1.08006 * 120.03666 * 179.76109 * 17 16 15 46 46 H 0.97001 * 120.00070 * 180.02562 * 23 22 20 47 47 H 1.07996 * 120.03127 * 359.96280 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8311 1.1880 6 1 4.0719 -0.0354 0.6424 7 6 4.1700 -2.2344 1.1153 8 6 4.2801 -1.4198 2.4057 9 1 3.6644 -1.7288 3.2504 10 7 5.5942 -0.8708 2.7490 11 6 6.0464 -0.9474 4.0163 12 8 5.3652 -1.4705 4.8726 13 6 7.3984 -0.3831 4.3694 14 6 7.6633 -0.5949 5.8378 15 6 7.2843 0.3693 6.7543 16 6 7.5212 0.1766 8.1029 17 6 8.1468 -0.9754 8.5379 18 6 8.5333 -1.9429 7.6198 19 8 9.1489 -3.0760 8.0442 20 6 9.4585 -3.1504 9.3544 21 1 9.1439 -2.3679 10.0289 22 6 10.1808 -4.2317 9.8357 23 7 10.5636 -5.1852 9.0141 24 14 10.6092 -4.3352 11.6509 25 1 10.0654 -3.1469 12.3564 26 1 10.0170 -5.5679 12.2297 27 1 12.0852 -4.3732 11.8098 28 6 8.2891 -1.7487 6.2663 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 3.1301 1.4424 0.0005 36 1 1.6053 -1.7198 1.2951 37 1 1.7516 -0.1584 2.1370 38 1 5.0754 -2.3619 0.5218 39 1 3.4819 -3.0797 1.1107 40 1 6.1389 -0.4521 2.0642 41 1 7.4160 0.6839 4.1476 42 1 8.1670 -0.8885 3.7846 43 1 6.7993 1.2732 6.4161 44 1 7.2204 0.9293 8.8165 45 1 8.3350 -1.1238 9.5910 46 1 11.0685 -5.9419 9.3509 47 1 8.5882 -2.4994 5.5499 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837900824.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:50 Heat of formation + Delta-G solvation = -36.551034 kcal Electronic energy + Delta-G solvation = -25106.806370 eV Core-core repulsion = 21448.301678 eV Total energy + Delta-G solvation = -3658.504692 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.98061 -38.93297 -38.15515 -36.43489 -35.72044 -33.01299 -32.28702 -31.76186 -29.15212 -27.79269 -27.51577 -26.87362 -25.19514 -22.63177 -21.65086 -21.45600 -21.00656 -20.38911 -19.89360 -17.63158 -17.04801 -16.92553 -16.50179 -15.49270 -15.34313 -14.90312 -14.58747 -14.49322 -14.29584 -14.20438 -13.82961 -13.50383 -13.37294 -13.27978 -12.99820 -12.59847 -12.57599 -12.36790 -12.28575 -12.03444 -11.88910 -11.59444 -11.43404 -11.23463 -11.15674 -11.00762 -10.89772 -10.79959 -10.72194 -10.56240 -10.39026 -10.28456 -9.70942 -9.27445 -8.78602 -8.77220 -8.00430 -7.15513 -6.38758 -3.97567 2.14358 2.45377 2.70722 3.08491 3.17440 3.17495 3.23183 3.65049 4.01624 4.32026 4.48839 4.54790 4.58979 4.69291 4.76017 4.88332 4.95238 5.02858 5.11677 5.16369 5.26981 5.27846 5.35651 5.43791 5.47508 5.53764 5.55573 5.59242 5.65658 5.69825 5.78063 5.79461 5.83199 5.88900 5.99350 6.02868 6.05536 6.23849 6.40056 6.44449 6.72054 6.98072 7.13649 7.32789 7.42690 7.46392 7.50553 7.89267 8.06632 8.33232 9.07178 9.78677 10.79688 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026263 B = 0.002028 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.880068 B =13801.216220 C =14199.058285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.084 4.084 5 C -0.161 4.161 6 H 0.108 0.892 7 C -0.191 4.191 8 C 0.088 3.912 9 H 0.136 0.864 10 N -0.711 5.711 11 C 0.517 3.483 12 O -0.516 6.516 13 C -0.093 4.093 14 C -0.033 4.033 15 C -0.196 4.196 16 C -0.075 4.075 17 C -0.230 4.230 18 C 0.154 3.846 19 O -0.180 6.180 20 C -0.390 4.390 21 H 0.092 0.908 22 C 0.037 3.963 23 N -0.864 5.864 24 Si 0.941 3.059 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.276 1.276 28 C -0.174 4.174 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.399 0.601 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.126 0.874 46 H 0.268 0.732 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.623 12.060 -18.507 25.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.122 4.122 5 C -0.180 4.180 6 H 0.126 0.874 7 C -0.229 4.229 8 C -0.018 4.018 9 H 0.153 0.847 10 N -0.363 5.363 11 C 0.304 3.696 12 O -0.389 6.389 13 C -0.133 4.133 14 C -0.034 4.034 15 C -0.215 4.215 16 C -0.093 4.093 17 C -0.250 4.250 18 C 0.101 3.899 19 O -0.084 6.084 20 C -0.466 4.466 21 H 0.109 0.891 22 C -0.166 4.166 23 N -0.500 5.500 24 Si 0.766 3.234 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.202 1.202 28 C -0.193 4.193 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.233 0.767 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.144 0.856 46 H 0.078 0.922 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.902 11.245 -17.924 25.318 hybrid contribution 0.481 0.126 0.503 0.707 sum -13.421 11.371 -17.422 24.758 Atomic orbital electron populations 1.21850 0.95262 1.01741 1.01758 1.21074 0.95530 0.96320 0.98320 1.21896 1.01142 0.95940 1.01640 1.21245 0.92036 1.00836 0.98088 1.22932 0.95840 0.97141 1.02102 0.87415 1.23617 1.03194 0.94718 1.01416 1.21677 0.86717 1.00731 0.92700 0.84662 1.45453 1.18505 1.61574 1.10720 1.20791 0.88392 0.78938 0.81461 1.90755 1.58035 1.42374 1.47783 1.20587 0.94304 1.02488 0.95903 1.18647 0.98052 0.94430 0.92272 1.20348 1.08059 0.99934 0.93187 1.20677 0.97231 0.96387 0.95036 1.21178 1.07345 0.96192 1.00254 1.19278 0.91435 0.86667 0.92509 1.83980 1.65898 1.30956 1.27570 1.21368 1.35284 1.08673 0.81287 0.89073 1.25279 0.96125 0.94969 1.00247 1.70053 1.35522 1.09480 1.34938 0.85650 0.78465 0.78678 0.80638 1.19130 1.20208 1.20199 1.19948 1.07462 0.98508 0.93426 0.92638 0.92777 0.92692 0.91163 0.92944 0.92653 0.92509 0.91538 0.91333 0.88611 0.88121 0.76696 0.88343 0.88189 0.87948 0.87481 0.85614 0.92181 0.86835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.19 37.16 0.34 -0.51 16 2 C -0.09 -0.57 2.92 -90.62 -0.26 -0.84 16 3 C -0.15 -0.88 9.01 37.16 0.33 -0.55 16 4 C -0.08 -0.60 4.96 -26.73 -0.13 -0.73 16 5 C -0.16 -1.21 5.45 -90.62 -0.49 -1.70 16 6 H 0.11 0.72 6.38 -51.93 -0.33 0.39 16 7 C -0.19 -1.56 10.10 -26.73 -0.27 -1.83 16 8 C 0.09 0.91 6.15 -67.93 -0.42 0.49 16 9 H 0.14 1.70 7.40 -51.93 -0.38 1.32 16 10 N -0.71 -7.51 5.57 -53.81 -0.30 -7.81 16 11 C 0.52 7.60 7.82 -10.99 -0.09 7.51 16 12 O -0.52 -10.23 15.60 5.56 0.09 -10.14 16 13 C -0.09 -1.25 5.83 -29.04 -0.17 -1.41 16 14 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 15 C -0.20 -3.62 9.70 -39.54 -0.38 -4.00 16 16 C -0.08 -1.47 10.04 -39.61 -0.40 -1.87 16 17 C -0.23 -5.30 9.17 -39.39 -0.36 -5.66 16 18 C 0.15 3.93 6.65 -39.11 -0.26 3.67 16 19 O -0.18 -5.35 9.76 0.03 0.00 -5.35 16 20 C -0.39 -11.25 9.49 30.89 0.29 -10.95 16 21 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 22 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 23 N -0.86 -25.96 13.67 55.48 0.76 -25.20 16 24 Si 0.94 21.07 29.55 -169.99 -5.02 16.04 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 28 C -0.17 -3.89 9.65 -39.39 -0.38 -4.27 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.33 6.41 -51.93 -0.33 0.00 16 36 H 0.07 0.47 7.88 -51.93 -0.41 0.06 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.79 8.03 -51.93 -0.42 0.37 16 40 H 0.40 2.88 8.83 -40.82 -0.36 2.52 16 41 H 0.10 1.00 8.08 -51.93 -0.42 0.58 16 42 H 0.10 1.14 8.09 -51.93 -0.42 0.72 16 43 H 0.10 1.59 8.06 -52.48 -0.42 1.17 16 44 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 45 H 0.13 2.87 5.64 -52.48 -0.30 2.58 16 46 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.11 2.46 8.06 -52.49 -0.42 2.04 16 LS Contribution 391.00 15.07 5.89 5.89 Total: -1.00 -34.62 391.00 -9.21 -43.83 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -7.43 Total: 5.50 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -3.20 Total: -22.77 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.46 Total: -33.01 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.09 Total: -15.49 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.62 -9.21 -43.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837900824.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.278 kcal (2) G-P(sol) polarization free energy of solvation -34.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds