Wall clock time and date at job start Tue Mar 31 2020 11:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47350 * 2 1 4 4 C 1.53006 * 109.46889 * 120.00186 * 2 1 3 5 5 C 1.53000 * 109.46876 * 175.00068 * 4 2 1 6 6 H 1.08994 * 115.55262 * 29.32827 * 5 4 2 7 7 C 1.53000 * 117.51239 * 243.62468 * 5 4 2 8 8 C 1.52994 * 60.00257 * 252.52057 * 7 5 4 9 9 H 1.09005 * 117.51905 * 107.48119 * 8 7 5 10 10 N 1.46498 * 117.50262 * 252.51567 * 8 7 5 11 11 C 1.34773 * 120.00093 * 223.62301 * 10 8 7 12 12 O 1.21282 * 119.99966 * 359.97438 * 11 10 8 13 13 C 1.50701 * 120.00344 * 179.97438 * 11 10 8 14 14 C 1.50698 * 109.47470 * 179.97438 * 13 11 10 15 15 C 1.38320 * 119.96579 * 269.72257 * 14 13 11 16 16 C 1.38279 * 120.14060 * 179.76260 * 15 14 13 17 17 C 1.38121 * 120.06625 * 0.51151 * 16 15 14 18 18 C 1.38860 * 119.93146 * 359.74905 * 17 16 15 19 19 O 1.35755 * 120.06971 * 179.97438 * 18 17 16 20 20 C 1.34832 * 116.99667 * 354.48047 * 19 18 17 21 21 H 1.07995 * 120.00554 * 5.06358 * 20 19 18 22 22 C 1.38660 * 119.99633 * 185.05749 * 20 19 18 23 23 N 1.31556 * 120.00062 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 119.99886 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47255 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47163 * 120.00189 * 24 22 20 27 27 H 1.48499 * 109.47150 * 240.00303 * 24 22 20 28 28 C 1.38085 * 119.96634 * 89.99553 * 14 13 11 29 29 H 1.09003 * 109.47213 * 299.99759 * 1 2 3 30 30 H 1.09002 * 109.46933 * 59.99914 * 1 2 3 31 31 H 1.08998 * 109.47109 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46980 * 239.99657 * 2 1 3 33 33 H 1.08993 * 109.47304 * 300.00097 * 3 2 1 34 34 H 1.09003 * 109.46766 * 59.99966 * 3 2 1 35 35 H 1.09001 * 109.47174 * 179.97438 * 3 2 1 36 36 H 1.08993 * 109.46963 * 54.99818 * 4 2 1 37 37 H 1.09002 * 109.47141 * 294.99661 * 4 2 1 38 38 H 1.09006 * 117.49615 * 145.03320 * 7 5 4 39 39 H 1.08998 * 117.50260 * 0.02562 * 7 5 4 40 40 H 0.96997 * 119.99930 * 43.61885 * 10 8 7 41 41 H 1.08997 * 109.47235 * 59.99342 * 13 11 10 42 42 H 1.09003 * 109.46722 * 300.00013 * 13 11 10 43 43 H 1.08005 * 119.92873 * 359.97438 * 15 14 13 44 44 H 1.07997 * 119.97156 * 180.25668 * 16 15 14 45 45 H 1.08006 * 120.03666 * 179.76109 * 17 16 15 46 46 H 0.97001 * 120.00070 * 180.02562 * 23 22 20 47 47 H 1.07996 * 120.03127 * 359.96280 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8311 1.1880 6 1 4.0719 -0.0354 0.6424 7 6 4.1700 -2.2344 1.1153 8 6 4.2801 -1.4198 2.4057 9 1 3.6644 -1.7288 3.2504 10 7 5.5942 -0.8708 2.7490 11 6 6.0464 -0.9474 4.0163 12 8 5.3652 -1.4705 4.8726 13 6 7.3984 -0.3831 4.3694 14 6 7.6633 -0.5949 5.8378 15 6 7.2843 0.3693 6.7543 16 6 7.5212 0.1766 8.1029 17 6 8.1468 -0.9754 8.5379 18 6 8.5333 -1.9429 7.6198 19 8 9.1489 -3.0760 8.0442 20 6 9.4585 -3.1504 9.3544 21 1 9.1439 -2.3679 10.0289 22 6 10.1808 -4.2317 9.8357 23 7 10.5636 -5.1852 9.0141 24 14 10.6092 -4.3352 11.6509 25 1 10.0654 -3.1469 12.3564 26 1 10.0170 -5.5679 12.2297 27 1 12.0852 -4.3732 11.8098 28 6 8.2891 -1.7487 6.2663 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 3.1301 1.4424 0.0005 36 1 1.6053 -1.7198 1.2951 37 1 1.7516 -0.1584 2.1370 38 1 5.0754 -2.3619 0.5218 39 1 3.4819 -3.0797 1.1107 40 1 6.1389 -0.4521 2.0642 41 1 7.4160 0.6839 4.1476 42 1 8.1670 -0.8885 3.7846 43 1 6.7993 1.2732 6.4161 44 1 7.2204 0.9293 8.8165 45 1 8.3350 -1.1238 9.5910 46 1 11.0685 -5.9419 9.3509 47 1 8.5882 -2.4994 5.5499 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837900824.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:49 Heat of formation + Delta-G solvation = -58.044024 kcal Electronic energy + Delta-G solvation = -25107.738376 eV Core-core repulsion = 21448.301678 eV Total energy + Delta-G solvation = -3659.436698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.18430 -40.49997 -39.11634 -38.11262 -36.41888 -34.35631 -34.03283 -33.14813 -30.88010 -28.76523 -28.05767 -27.86265 -27.22368 -23.72169 -23.19512 -22.51946 -21.95055 -21.57412 -20.57887 -19.49841 -18.79718 -18.04574 -17.44593 -16.81361 -16.57887 -16.17305 -16.02407 -15.84334 -15.55153 -15.26127 -15.10465 -14.88308 -14.60269 -14.34539 -14.07792 -13.90355 -13.65391 -13.56932 -13.07624 -12.98306 -12.97217 -12.82196 -12.53325 -12.49067 -12.37898 -12.28949 -12.21339 -12.08256 -11.66632 -11.59764 -11.45666 -11.20634 -11.09436 -10.85422 -10.78266 -9.65414 -9.62470 -8.97901 -8.47329 -6.15848 0.51726 0.75708 1.33741 1.42647 1.52702 1.61602 2.12656 2.17683 2.84501 2.92584 3.17582 3.44085 3.69138 3.79014 3.83164 3.97965 4.08267 4.11039 4.13690 4.18399 4.32053 4.34978 4.44537 4.47159 4.58118 4.64450 4.73944 4.79935 4.84020 4.86955 4.92327 4.96228 5.00489 5.07900 5.10204 5.13317 5.16648 5.29072 5.31041 5.38057 5.50261 5.55772 5.58498 5.65204 5.72836 5.75368 6.02854 6.23643 6.57855 6.97233 7.31293 7.79019 8.76506 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026263 B = 0.002028 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.880068 B =13801.216220 C =14199.058285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 C -0.149 4.149 4 C -0.086 4.086 5 C -0.134 4.134 6 H 0.126 0.874 7 C -0.182 4.182 8 C 0.056 3.944 9 H 0.105 0.895 10 N -0.689 5.689 11 C 0.516 3.484 12 O -0.580 6.580 13 C -0.090 4.090 14 C -0.026 4.026 15 C -0.180 4.180 16 C -0.074 4.074 17 C -0.247 4.247 18 C 0.111 3.889 19 O -0.235 6.235 20 C -0.414 4.414 21 H 0.100 0.900 22 C -0.025 4.025 23 N -0.922 5.922 24 Si 1.021 2.979 25 H -0.252 1.252 26 H -0.269 1.269 27 H -0.265 1.265 28 C -0.193 4.193 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.419 0.581 41 H 0.146 0.854 42 H 0.123 0.877 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.117 0.883 46 H 0.272 0.728 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.485 15.173 -20.149 29.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.206 4.206 4 C -0.124 4.124 5 C -0.153 4.153 6 H 0.144 0.856 7 C -0.220 4.220 8 C -0.050 4.050 9 H 0.123 0.877 10 N -0.340 5.340 11 C 0.304 3.696 12 O -0.458 6.458 13 C -0.129 4.129 14 C -0.027 4.027 15 C -0.199 4.199 16 C -0.092 4.092 17 C -0.266 4.266 18 C 0.061 3.939 19 O -0.142 6.142 20 C -0.490 4.490 21 H 0.118 0.882 22 C -0.222 4.222 23 N -0.561 5.561 24 Si 0.840 3.160 25 H -0.175 1.175 26 H -0.194 1.194 27 H -0.190 1.190 28 C -0.213 4.213 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.257 0.743 41 H 0.164 0.836 42 H 0.141 0.859 43 H 0.166 0.834 44 H 0.163 0.837 45 H 0.135 0.865 46 H 0.081 0.919 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.786 14.427 -19.654 28.513 hybrid contribution 0.547 -0.619 0.758 1.121 sum -14.239 13.807 -18.896 27.394 Atomic orbital electron populations 1.21856 0.95108 1.01814 1.01912 1.21049 0.95685 0.96427 0.97727 1.21900 1.01399 0.95623 1.01699 1.21268 0.91854 1.00851 0.98396 1.22959 0.95886 0.97188 0.99254 0.85633 1.23686 1.03760 0.95221 0.99381 1.21659 0.86767 1.03653 0.92902 0.87696 1.45204 1.18622 1.60302 1.09882 1.20964 0.88338 0.78219 0.82039 1.90748 1.59802 1.45484 1.49807 1.20700 0.94127 1.05720 0.92334 1.19201 0.95325 0.92492 0.95674 1.20985 1.05476 1.00891 0.92526 1.21139 0.95674 0.95639 0.96759 1.21295 1.08446 0.97252 0.99596 1.19890 0.92726 0.86915 0.94394 1.83938 1.68591 1.33598 1.28068 1.21870 1.35914 1.09474 0.81718 0.88234 1.26630 0.95610 0.94135 1.05867 1.70198 1.37484 1.10670 1.37701 0.84500 0.78582 0.79250 0.73650 1.17526 1.19406 1.19031 1.20232 1.08616 1.00130 0.92275 0.93033 0.92090 0.92707 0.90665 0.92299 0.93238 0.92060 0.91728 0.92206 0.87325 0.88030 0.74321 0.83634 0.85917 0.83444 0.83677 0.86476 0.91860 0.87592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.19 71.98 0.66 -0.81 16 2 C -0.09 -0.91 2.92 -10.79 -0.03 -0.94 16 3 C -0.15 -1.39 9.01 71.98 0.65 -0.74 16 4 C -0.09 -1.08 4.96 30.60 0.15 -0.93 16 5 C -0.13 -1.69 5.45 -10.79 -0.06 -1.74 16 6 H 0.13 1.18 6.38 -2.39 -0.02 1.17 16 7 C -0.18 -2.61 10.10 30.59 0.31 -2.30 16 8 C 0.06 1.09 6.15 44.99 0.28 1.37 16 9 H 0.11 2.73 7.40 -2.38 -0.02 2.72 16 10 N -0.69 -12.83 5.57 -442.54 -2.46 -15.29 16 11 C 0.52 14.20 7.82 87.66 0.69 14.89 16 12 O -0.58 -23.03 15.60 -3.04 -0.05 -23.08 16 13 C -0.09 -2.09 5.83 29.10 0.17 -1.92 16 14 C -0.03 -0.93 4.37 -19.88 -0.09 -1.02 16 15 C -0.18 -6.03 9.70 22.30 0.22 -5.82 16 16 C -0.07 -2.76 10.04 22.25 0.22 -2.54 16 17 C -0.25 -11.60 9.17 22.39 0.21 -11.40 16 18 C 0.11 5.94 6.65 22.58 0.15 6.09 16 19 O -0.23 -14.98 9.76 -22.81 -0.22 -15.20 16 20 C -0.41 -25.28 9.49 67.92 0.64 -24.64 16 21 H 0.10 5.62 5.20 -2.91 -0.02 5.61 16 22 C -0.03 -1.50 5.49 84.84 0.47 -1.04 16 23 N -0.92 -58.49 13.67 21.61 0.30 -58.19 16 24 Si 1.02 44.50 29.55 68.60 2.03 46.52 16 25 H -0.25 -10.17 7.11 99.48 0.71 -9.47 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 27 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 28 C -0.19 -8.90 9.65 22.39 0.22 -8.68 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.06 0.51 6.41 -2.39 -0.02 0.49 16 36 H 0.06 0.84 7.88 -2.39 -0.02 0.82 16 37 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.10 1.45 8.03 -2.39 -0.02 1.43 16 40 H 0.42 4.40 8.83 -92.71 -0.82 3.58 16 41 H 0.15 2.08 8.08 -2.39 -0.02 2.06 16 42 H 0.12 2.37 8.09 -2.39 -0.02 2.35 16 43 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 44 H 0.15 4.25 8.06 -2.91 -0.02 4.22 16 45 H 0.12 5.57 5.64 -2.91 -0.02 5.55 16 46 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 47 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -83.46 391.00 4.59 -78.87 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.15 Total: 28.53 kcal Atomic # 6 Polarization: -47.01 SS G_CDS: 4.85 Total: -42.16 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -2.17 Total: -73.48 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.27 Total: -38.29 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -83.46 4.59 -78.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837900824.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.828 kcal (2) G-P(sol) polarization free energy of solvation -83.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds