Wall clock time and date at job start Tue Mar 31 2020 12:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47227 * 2 1 4 4 C 1.52998 * 109.47045 * 120.00285 * 2 1 3 5 5 N 1.46502 * 109.46786 * 174.99940 * 4 2 1 6 6 C 1.46499 * 120.00109 * 95.97048 * 5 4 2 7 7 C 1.50701 * 109.47368 * 86.08788 * 6 5 4 8 8 H 1.07997 * 120.00213 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99974 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99907 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00204 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47246 * 179.97438 * 11 9 7 13 13 H 1.48504 * 109.47125 * 300.00010 * 11 9 7 14 14 H 1.48500 * 109.46971 * 59.99880 * 11 9 7 15 15 C 1.34773 * 120.00182 * 275.96332 * 5 4 2 16 16 O 1.21287 * 119.99881 * 4.81639 * 15 5 4 17 17 C 1.50703 * 120.00309 * 184.81386 * 15 5 4 18 18 H 1.08996 * 109.67809 * 42.85987 * 17 15 5 19 19 C 1.53408 * 109.68518 * 282.33442 * 17 15 5 20 20 C 1.53068 * 108.30512 * 175.56441 * 19 17 15 21 21 C 1.50767 * 109.68460 * 48.17749 * 20 19 17 22 22 C 1.38512 * 118.76222 * 162.22052 * 21 20 19 23 23 C 1.38107 * 120.31309 * 179.83802 * 22 21 20 24 24 C 1.38291 * 119.98674 * 359.97438 * 23 22 21 25 25 C 1.37967 * 119.95563 * 0.08891 * 24 23 22 26 26 C 1.38371 * 121.40813 * 342.19689 * 21 20 19 27 27 O 1.35845 * 121.80186 * 0.50948 * 26 21 20 28 28 H 1.09000 * 109.46749 * 299.99370 * 1 2 3 29 29 H 1.09001 * 109.47288 * 59.99935 * 1 2 3 30 30 H 1.09002 * 109.47214 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47072 * 239.99928 * 2 1 3 32 32 H 1.08997 * 109.47444 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47039 * 300.00217 * 3 2 1 34 34 H 1.09002 * 109.47153 * 59.99978 * 3 2 1 35 35 H 1.08991 * 109.47456 * 55.00199 * 4 2 1 36 36 H 1.08994 * 109.47226 * 294.99495 * 4 2 1 37 37 H 1.08999 * 109.47284 * 326.08622 * 6 5 4 38 38 H 1.09003 * 109.46982 * 206.08781 * 6 5 4 39 39 H 0.97000 * 120.00159 * 180.02562 * 10 9 7 40 40 H 1.08998 * 109.70168 * 295.27552 * 19 17 15 41 41 H 1.09012 * 109.69462 * 55.86741 * 19 17 15 42 42 H 1.09007 * 109.43091 * 168.23704 * 20 19 17 43 43 H 1.09001 * 109.44252 * 288.15155 * 20 19 17 44 44 H 1.07995 * 119.84609 * 359.81752 * 22 21 20 45 45 H 1.07998 * 120.00846 * 179.97438 * 23 22 21 46 46 H 1.07996 * 120.02379 * 180.10557 * 24 23 22 47 47 H 1.08004 * 119.89115 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1904 6 6 4.3340 0.1653 1.8740 7 6 4.5299 -0.2472 3.3102 8 1 4.0787 -1.1573 3.6770 9 6 5.2851 0.5373 4.1559 10 7 5.8349 1.6453 3.7091 11 14 5.5274 0.0264 5.9362 12 1 6.3728 1.0316 6.6291 13 1 4.2070 -0.0600 6.6105 14 1 6.1953 -1.2990 5.9843 15 6 4.0761 -1.8355 0.5077 16 8 3.3898 -2.6057 -0.1302 17 6 5.5731 -2.0070 0.5366 18 1 5.9398 -1.8600 1.5524 19 6 6.2284 -0.9859 -0.4022 20 6 7.7476 -1.1124 -0.2650 21 6 8.1467 -2.5634 -0.3567 22 6 9.4685 -2.8752 -0.6295 23 6 9.8698 -4.1937 -0.7173 24 6 8.9504 -5.2099 -0.5320 25 6 7.6322 -4.9054 -0.2613 26 6 7.2238 -3.5781 -0.1741 27 8 5.9160 -3.3180 0.0855 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6054 -1.7198 1.2951 36 1 1.7517 -0.1584 2.1369 37 1 3.8438 1.1383 1.8391 38 1 5.3029 0.2286 1.3788 39 1 6.3665 2.1970 4.3040 40 1 5.9341 -1.1912 -1.4315 41 1 5.9171 0.0212 -0.1245 42 1 8.2319 -0.5519 -1.0647 43 1 8.0595 -0.7114 0.6994 44 1 10.1885 -2.0835 -0.7745 45 1 10.9015 -4.4312 -0.9306 46 1 9.2639 -6.2412 -0.5988 47 1 6.9151 -5.6998 -0.1163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840292395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:14 Heat of formation + Delta-G solvation = -64.450777 kcal Electronic energy + Delta-G solvation = -27700.453482 eV Core-core repulsion = 24040.738967 eV Total energy + Delta-G solvation = -3659.714516 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.67161 -39.13784 -37.17463 -35.93183 -34.48872 -33.72437 -32.37712 -30.58710 -30.02027 -27.70989 -26.88408 -26.68913 -24.80085 -23.68066 -22.84723 -22.30932 -20.36499 -19.81083 -18.53052 -17.64153 -16.82433 -16.52454 -16.25797 -15.37964 -15.14327 -14.82795 -14.59577 -14.53049 -14.14919 -13.99071 -13.76827 -13.48359 -13.09213 -13.02474 -12.71788 -12.48056 -12.38119 -12.22175 -11.98493 -11.74709 -11.55376 -11.37646 -11.28974 -11.13331 -10.97671 -10.93402 -10.79649 -10.60777 -10.50486 -10.27741 -10.21149 -10.09457 -9.75524 -9.00789 -8.65249 -8.60326 -7.93127 -7.78323 -6.26326 -4.33992 1.44940 1.58637 2.99843 3.20144 3.25205 3.29085 3.35494 3.87370 4.16148 4.30610 4.81744 4.86700 4.95017 5.05068 5.08257 5.17554 5.26253 5.29552 5.38145 5.38722 5.45106 5.56746 5.66864 5.71491 5.85927 5.88598 5.96632 6.01907 6.04393 6.11222 6.14314 6.15503 6.25290 6.31343 6.34281 6.40212 6.44504 6.55963 6.60960 6.64660 6.72500 6.77086 6.91980 7.09043 7.43172 7.67918 7.73046 7.95908 8.22153 8.69764 8.89519 9.34449 10.79876 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009747 B = 0.005219 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.100597 B = 5363.862975 C = 7175.519154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C -0.145 4.145 4 C 0.130 3.870 5 N -0.587 5.587 6 C 0.224 3.776 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.068 3.932 10 N -0.889 5.889 11 Si 0.894 3.106 12 H -0.285 1.285 13 H -0.275 1.275 14 H -0.275 1.275 15 C 0.525 3.475 16 O -0.552 6.552 17 C 0.078 3.922 18 H 0.113 0.887 19 C -0.148 4.148 20 C -0.076 4.076 21 C -0.158 4.158 22 C -0.085 4.085 23 C -0.161 4.161 24 C -0.092 4.092 25 C -0.151 4.151 26 C 0.143 3.857 27 O -0.294 6.294 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.267 0.733 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.124 0.876 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.716 -3.817 -7.889 9.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.202 4.202 4 C 0.007 3.993 5 N -0.318 5.318 6 C 0.105 3.895 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.135 4.135 10 N -0.527 5.527 11 Si 0.722 3.278 12 H -0.211 1.211 13 H -0.200 1.200 14 H -0.200 1.200 15 C 0.311 3.689 16 O -0.431 6.431 17 C 0.019 3.981 18 H 0.131 0.869 19 C -0.186 4.186 20 C -0.113 4.113 21 C -0.159 4.159 22 C -0.103 4.103 23 C -0.179 4.179 24 C -0.110 4.110 25 C -0.170 4.170 26 C 0.097 3.903 27 O -0.207 6.207 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.119 0.881 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.142 0.858 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.295 -4.150 -8.157 9.435 hybrid contribution 0.393 0.073 1.215 1.279 sum 2.687 -4.076 -6.942 8.487 Atomic orbital electron populations 1.21745 0.95279 1.01476 1.01404 1.21492 0.95336 0.96813 0.99551 1.21871 1.01916 0.95468 1.00921 1.21370 0.80064 1.00481 0.97403 1.48062 1.06684 1.27177 1.49875 1.19770 0.90436 0.87336 0.91989 1.21475 1.32765 1.08923 0.95059 0.92056 1.24909 0.95104 0.94644 0.98868 1.69893 1.33184 1.13283 1.36356 0.86603 0.78416 0.78492 0.84321 1.21065 1.20035 1.20040 1.19728 0.88401 0.81167 0.79568 1.90627 1.64588 1.44901 1.42943 1.22366 0.94253 0.81346 1.00172 0.86908 1.22248 0.95555 1.00917 0.99875 1.20495 0.95318 0.91884 1.03598 1.19938 0.94269 0.95466 1.06216 1.20872 0.94447 0.96608 0.98392 1.20940 0.99509 0.92767 1.04677 1.20850 0.92286 0.99198 0.98668 1.20587 0.96564 0.93976 1.05847 1.18797 0.83127 0.93283 0.95143 1.86003 1.21600 1.32041 1.81052 0.92699 0.92984 0.92819 0.91081 0.91992 0.93630 0.92631 0.91447 0.89969 0.93732 0.93786 0.92374 0.90674 0.88054 0.89954 0.89419 0.85987 0.86244 0.85773 0.85356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.19 37.16 0.34 -1.49 16 2 C -0.11 -1.77 3.08 -90.62 -0.28 -2.05 16 3 C -0.14 -2.20 8.35 37.15 0.31 -1.89 16 4 C 0.13 2.36 4.76 -4.04 -0.02 2.34 16 5 N -0.59 -11.95 2.18 -175.06 -0.38 -12.34 16 6 C 0.22 4.96 3.91 -5.19 -0.02 4.94 16 7 C -0.54 -13.55 9.00 -34.44 -0.31 -13.86 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -23.27 13.29 55.43 0.74 -22.53 16 11 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 12 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 14 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 15 C 0.53 11.18 6.93 -10.99 -0.08 11.10 16 16 O -0.55 -12.94 16.17 -13.67 -0.22 -13.16 16 17 C 0.08 1.53 2.35 -27.67 -0.07 1.46 16 18 H 0.11 2.39 7.19 -51.93 -0.37 2.01 16 19 C -0.15 -2.49 5.12 -26.48 -0.14 -2.62 16 20 C -0.08 -1.13 5.86 -27.82 -0.16 -1.30 16 21 C -0.16 -2.47 5.75 -104.44 -0.60 -3.07 16 22 C -0.09 -1.12 9.67 -39.53 -0.38 -1.50 16 23 C -0.16 -1.94 10.04 -39.61 -0.40 -2.34 16 24 C -0.09 -1.15 10.04 -39.66 -0.40 -1.55 16 25 C -0.15 -2.28 9.94 -39.34 -0.39 -2.67 16 26 C 0.14 2.48 6.47 -39.20 -0.25 2.23 16 27 O -0.29 -5.90 9.52 -38.48 -0.37 -6.26 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.24 7.98 -51.93 -0.41 0.83 16 32 H 0.06 1.04 6.28 -51.93 -0.33 0.71 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.25 7.68 -51.93 -0.40 0.85 16 36 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 37 H 0.04 1.03 6.51 -51.93 -0.34 0.69 16 38 H 0.04 0.98 4.38 -51.93 -0.23 0.75 16 39 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.10 1.71 5.91 -51.92 -0.31 1.40 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 46 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 47 H 0.13 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -28.54 375.38 -9.96 -38.49 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.42 Total: 5.70 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -2.94 Total: -10.63 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.35 Total: -34.87 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.59 Total: -19.42 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.54 -9.96 -38.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840292395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.959 kcal (2) G-P(sol) polarization free energy of solvation -28.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds