Wall clock time and date at job start Tue Mar 31 2020 12:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47227 * 2 1 4 4 C 1.52998 * 109.47045 * 120.00285 * 2 1 3 5 5 N 1.46502 * 109.46786 * 174.99940 * 4 2 1 6 6 C 1.46499 * 120.00109 * 95.97048 * 5 4 2 7 7 C 1.50701 * 109.47368 * 86.08788 * 6 5 4 8 8 H 1.07997 * 120.00213 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99974 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99907 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00204 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47246 * 179.97438 * 11 9 7 13 13 H 1.48504 * 109.47125 * 300.00010 * 11 9 7 14 14 H 1.48500 * 109.46971 * 59.99880 * 11 9 7 15 15 C 1.34773 * 120.00182 * 275.96332 * 5 4 2 16 16 O 1.21287 * 119.99881 * 4.81639 * 15 5 4 17 17 C 1.50703 * 120.00309 * 184.81386 * 15 5 4 18 18 H 1.08996 * 109.67809 * 42.85987 * 17 15 5 19 19 C 1.53408 * 109.68518 * 282.33442 * 17 15 5 20 20 C 1.53068 * 108.30512 * 175.56441 * 19 17 15 21 21 C 1.50767 * 109.68460 * 48.17749 * 20 19 17 22 22 C 1.38512 * 118.76222 * 162.22052 * 21 20 19 23 23 C 1.38107 * 120.31309 * 179.83802 * 22 21 20 24 24 C 1.38291 * 119.98674 * 359.97438 * 23 22 21 25 25 C 1.37967 * 119.95563 * 0.08891 * 24 23 22 26 26 C 1.38371 * 121.40813 * 342.19689 * 21 20 19 27 27 O 1.35845 * 121.80186 * 0.50948 * 26 21 20 28 28 H 1.09000 * 109.46749 * 299.99370 * 1 2 3 29 29 H 1.09001 * 109.47288 * 59.99935 * 1 2 3 30 30 H 1.09002 * 109.47214 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47072 * 239.99928 * 2 1 3 32 32 H 1.08997 * 109.47444 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47039 * 300.00217 * 3 2 1 34 34 H 1.09002 * 109.47153 * 59.99978 * 3 2 1 35 35 H 1.08991 * 109.47456 * 55.00199 * 4 2 1 36 36 H 1.08994 * 109.47226 * 294.99495 * 4 2 1 37 37 H 1.08999 * 109.47284 * 326.08622 * 6 5 4 38 38 H 1.09003 * 109.46982 * 206.08781 * 6 5 4 39 39 H 0.97000 * 120.00159 * 180.02562 * 10 9 7 40 40 H 1.08998 * 109.70168 * 295.27552 * 19 17 15 41 41 H 1.09012 * 109.69462 * 55.86741 * 19 17 15 42 42 H 1.09007 * 109.43091 * 168.23704 * 20 19 17 43 43 H 1.09001 * 109.44252 * 288.15155 * 20 19 17 44 44 H 1.07995 * 119.84609 * 359.81752 * 22 21 20 45 45 H 1.07998 * 120.00846 * 179.97438 * 23 22 21 46 46 H 1.07996 * 120.02379 * 180.10557 * 24 23 22 47 47 H 1.08004 * 119.89115 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1904 6 6 4.3340 0.1653 1.8740 7 6 4.5299 -0.2472 3.3102 8 1 4.0787 -1.1573 3.6770 9 6 5.2851 0.5373 4.1559 10 7 5.8349 1.6453 3.7091 11 14 5.5274 0.0264 5.9362 12 1 6.3728 1.0316 6.6291 13 1 4.2070 -0.0600 6.6105 14 1 6.1953 -1.2990 5.9843 15 6 4.0761 -1.8355 0.5077 16 8 3.3898 -2.6057 -0.1302 17 6 5.5731 -2.0070 0.5366 18 1 5.9398 -1.8600 1.5524 19 6 6.2284 -0.9859 -0.4022 20 6 7.7476 -1.1124 -0.2650 21 6 8.1467 -2.5634 -0.3567 22 6 9.4685 -2.8752 -0.6295 23 6 9.8698 -4.1937 -0.7173 24 6 8.9504 -5.2099 -0.5320 25 6 7.6322 -4.9054 -0.2613 26 6 7.2238 -3.5781 -0.1741 27 8 5.9160 -3.3180 0.0855 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6054 -1.7198 1.2951 36 1 1.7517 -0.1584 2.1369 37 1 3.8438 1.1383 1.8391 38 1 5.3029 0.2286 1.3788 39 1 6.3665 2.1970 4.3040 40 1 5.9341 -1.1912 -1.4315 41 1 5.9171 0.0212 -0.1245 42 1 8.2319 -0.5519 -1.0647 43 1 8.0595 -0.7114 0.6994 44 1 10.1885 -2.0835 -0.7745 45 1 10.9015 -4.4312 -0.9306 46 1 9.2639 -6.2412 -0.5988 47 1 6.9151 -5.6998 -0.1163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840292395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:13 Heat of formation + Delta-G solvation = -76.818474 kcal Electronic energy + Delta-G solvation = -27700.989786 eV Core-core repulsion = 24040.738967 eV Total energy + Delta-G solvation = -3660.250819 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.05330 -40.64245 -38.42646 -37.49689 -35.97966 -35.15617 -34.18995 -31.84491 -31.13250 -29.49315 -28.19788 -28.00425 -26.26865 -25.08497 -24.51651 -23.41734 -21.72458 -21.08543 -20.08066 -18.96236 -18.71211 -18.00413 -17.78831 -16.85990 -16.53780 -16.27984 -16.22679 -15.91326 -15.39472 -15.27734 -15.01127 -14.86328 -14.49645 -14.35735 -14.15289 -14.05245 -13.71193 -13.69932 -13.30283 -13.14000 -12.99811 -12.82286 -12.64834 -12.58888 -12.43858 -12.25704 -12.18624 -12.04931 -12.00278 -11.84671 -11.60241 -11.56472 -11.40261 -10.74410 -10.50843 -9.72589 -9.51211 -9.12643 -8.22366 -6.35774 0.37902 0.47005 1.38683 1.39837 1.43320 1.49778 1.78416 2.36918 2.65406 2.84811 3.07812 3.43614 3.52704 3.75992 3.80020 3.93988 3.98282 4.03000 4.17818 4.19409 4.23957 4.34464 4.48641 4.57812 4.59286 4.62393 4.65807 4.75426 4.79765 4.88608 4.90125 4.93475 4.98922 5.01350 5.05687 5.12750 5.19384 5.26776 5.37309 5.40302 5.45365 5.53826 5.59296 5.63714 5.78312 5.90971 6.03444 6.40053 6.49011 6.75179 7.16290 7.36110 8.82465 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009747 B = 0.005219 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.100597 B = 5363.862975 C = 7175.519154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 C -0.139 4.139 4 C 0.124 3.876 5 N -0.584 5.584 6 C 0.239 3.761 7 C -0.555 4.555 8 H 0.047 0.953 9 C 0.032 3.968 10 N -0.910 5.910 11 Si 0.946 3.054 12 H -0.278 1.278 13 H -0.272 1.272 14 H -0.278 1.278 15 C 0.520 3.480 16 O -0.578 6.578 17 C 0.083 3.917 18 H 0.090 0.910 19 C -0.140 4.140 20 C -0.071 4.071 21 C -0.173 4.173 22 C -0.087 4.087 23 C -0.150 4.150 24 C -0.087 4.087 25 C -0.167 4.167 26 C 0.099 3.901 27 O -0.321 6.321 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.040 0.960 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.038 0.962 38 H 0.044 0.956 39 H 0.269 0.731 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.112 0.888 43 H 0.079 0.921 44 H 0.150 0.850 45 H 0.157 0.843 46 H 0.158 0.842 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.282 -3.820 -8.391 10.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.125 4.125 3 C -0.197 4.197 4 C 0.002 3.998 5 N -0.314 5.314 6 C 0.119 3.881 7 C -0.593 4.593 8 H 0.065 0.935 9 C -0.170 4.170 10 N -0.549 5.549 11 Si 0.772 3.228 12 H -0.203 1.203 13 H -0.198 1.198 14 H -0.203 1.203 15 C 0.307 3.693 16 O -0.460 6.460 17 C 0.024 3.976 18 H 0.108 0.892 19 C -0.177 4.177 20 C -0.108 4.108 21 C -0.173 4.173 22 C -0.105 4.105 23 C -0.168 4.168 24 C -0.104 4.104 25 C -0.186 4.186 26 C 0.054 3.946 27 O -0.235 6.235 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.114 0.886 42 H 0.130 0.870 43 H 0.097 0.903 44 H 0.168 0.832 45 H 0.175 0.825 46 H 0.176 0.824 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.857 -4.146 -8.655 10.343 hybrid contribution -0.030 -0.012 1.348 1.349 sum 3.827 -4.158 -7.306 9.237 Atomic orbital electron populations 1.21705 0.92693 1.02025 1.02859 1.21409 0.97417 0.96531 0.97110 1.21816 1.00531 0.95197 1.02115 1.21555 0.78846 1.00469 0.98942 1.48073 1.07564 1.26617 1.49165 1.19501 0.90565 0.87128 0.90901 1.21638 1.32799 1.08443 0.96459 0.93471 1.25483 0.94886 0.94678 1.01933 1.69958 1.33602 1.13880 1.37418 0.85793 0.78361 0.78030 0.80647 1.20265 1.19757 1.20337 1.20091 0.89238 0.80812 0.79146 1.90592 1.65363 1.45812 1.44209 1.22157 0.93059 0.82720 0.99690 0.89229 1.22178 0.97074 0.99493 0.99000 1.20494 0.93705 0.92358 1.04204 1.20111 0.95263 0.95097 1.06866 1.21248 0.93661 0.98233 0.97349 1.21434 1.01125 0.92004 1.02262 1.21273 0.90953 1.01261 0.96939 1.20838 0.98084 0.93144 1.06517 1.19251 0.82533 0.94914 0.97893 1.85953 1.23797 1.31854 1.81874 0.91634 0.91106 0.92783 0.92956 0.94094 0.91347 0.92447 0.92254 0.89878 0.94394 0.93875 0.92156 0.90610 0.88561 0.87017 0.90291 0.83213 0.82506 0.82420 0.85529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.19 71.98 0.66 -2.68 16 2 C -0.11 -3.33 3.08 -10.80 -0.03 -3.36 16 3 C -0.14 -4.18 8.35 71.98 0.60 -3.58 16 4 C 0.12 4.66 4.76 86.38 0.41 5.07 16 5 N -0.58 -24.85 2.18 -826.17 -1.80 -26.65 16 6 C 0.24 10.96 3.91 85.63 0.33 11.29 16 7 C -0.55 -28.36 9.00 25.60 0.23 -28.13 16 8 H 0.05 2.50 7.81 -2.91 -0.02 2.48 16 9 C 0.03 1.62 5.46 84.65 0.46 2.08 16 10 N -0.91 -47.79 13.29 21.45 0.28 -47.51 16 11 Si 0.95 41.26 29.54 68.60 2.03 43.28 16 12 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 13 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 14 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 15 C 0.52 23.32 6.93 87.66 0.61 23.93 16 16 O -0.58 -28.49 16.17 15.33 0.25 -28.24 16 17 C 0.08 3.45 2.35 29.99 0.07 3.52 16 18 H 0.09 4.06 7.19 -2.39 -0.02 4.05 16 19 C -0.14 -4.85 5.12 30.75 0.16 -4.69 16 20 C -0.07 -2.09 5.86 29.89 0.18 -1.92 16 21 C -0.17 -5.29 5.75 -19.75 -0.11 -5.40 16 22 C -0.09 -2.06 9.67 22.30 0.22 -1.84 16 23 C -0.15 -3.07 10.04 22.25 0.22 -2.85 16 24 C -0.09 -1.94 10.04 22.22 0.22 -1.71 16 25 C -0.17 -5.03 9.94 22.42 0.22 -4.80 16 26 C 0.10 3.51 6.47 22.52 0.15 3.66 16 27 O -0.32 -13.58 9.52 -73.43 -0.70 -14.28 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.05 1.86 7.98 -2.39 -0.02 1.84 16 32 H 0.04 1.38 6.28 -2.39 -0.02 1.37 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.06 2.30 7.68 -2.39 -0.02 2.28 16 36 H 0.08 3.06 8.03 -2.39 -0.02 3.04 16 37 H 0.04 1.80 6.51 -2.39 -0.02 1.78 16 38 H 0.04 2.00 4.38 -2.39 -0.01 1.99 16 39 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 40 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.10 3.38 5.91 -2.38 -0.01 3.36 16 42 H 0.11 2.59 8.14 -2.38 -0.02 2.57 16 43 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 45 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 46 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 47 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -63.09 375.38 5.60 -57.49 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.95 Total: 27.34 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 4.60 Total: -11.42 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -1.52 Total: -74.16 kcal Atomic # 8 Polarization: -42.08 SS G_CDS: -0.45 Total: -42.53 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Total: -63.09 5.60 -57.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840292395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.333 kcal (2) G-P(sol) polarization free energy of solvation -63.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds