Wall clock time and date at job start Tue Mar 31 2020 12:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46862 * 2 1 4 4 C 1.52998 * 109.47091 * 119.99956 * 2 1 3 5 5 N 1.46497 * 109.47375 * 64.99973 * 4 2 1 6 6 C 1.46504 * 120.00179 * 264.35529 * 5 4 2 7 7 C 1.50698 * 109.46751 * 269.99746 * 6 5 4 8 8 H 1.08005 * 120.00309 * 359.97438 * 7 6 5 9 9 C 1.37884 * 120.00280 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99529 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00237 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47145 * 90.00254 * 11 9 7 13 13 H 1.48497 * 109.47164 * 210.00246 * 11 9 7 14 14 H 1.48504 * 109.47335 * 330.00049 * 11 9 7 15 15 C 1.34773 * 119.99974 * 84.34707 * 5 4 2 16 16 O 1.21285 * 120.00314 * 185.40989 * 15 5 4 17 17 C 1.50703 * 119.99899 * 5.41455 * 15 5 4 18 18 H 1.08993 * 109.70960 * 315.74945 * 17 15 5 19 19 C 1.53406 * 109.68226 * 76.29116 * 17 15 5 20 20 C 1.53069 * 108.30033 * 184.42866 * 19 17 15 21 21 C 1.50769 * 109.68024 * 311.79165 * 20 19 17 22 22 C 1.38511 * 118.76159 * 197.82679 * 21 20 19 23 23 C 1.38102 * 120.31123 * 180.15806 * 22 21 20 24 24 C 1.38291 * 119.98847 * 0.02562 * 23 22 21 25 25 C 1.37973 * 119.95716 * 359.92089 * 24 23 22 26 26 C 1.38364 * 121.40392 * 17.83975 * 21 20 19 27 27 O 1.35843 * 121.80852 * 359.48437 * 26 21 20 28 28 H 1.08999 * 109.47042 * 299.99894 * 1 2 3 29 29 H 1.09004 * 109.47118 * 60.00045 * 1 2 3 30 30 H 1.08996 * 109.46934 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47042 * 240.00106 * 2 1 3 32 32 H 1.08995 * 109.46735 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46915 * 300.00210 * 3 2 1 34 34 H 1.08999 * 109.47206 * 60.00206 * 3 2 1 35 35 H 1.09006 * 109.47214 * 305.00049 * 4 2 1 36 36 H 1.08995 * 109.47160 * 185.00288 * 4 2 1 37 37 H 1.08993 * 109.47112 * 29.99032 * 6 5 4 38 38 H 1.09003 * 109.47298 * 150.00042 * 6 5 4 39 39 H 0.96999 * 119.99827 * 180.02562 * 10 9 7 40 40 H 1.09006 * 109.69868 * 304.12987 * 19 17 15 41 41 H 1.09004 * 109.70146 * 64.72387 * 19 17 15 42 42 H 1.09007 * 109.43480 * 71.85092 * 20 19 17 43 43 H 1.09001 * 109.43819 * 191.76279 * 20 19 17 44 44 H 1.07996 * 119.84254 * 0.12895 * 22 21 20 45 45 H 1.07999 * 120.00700 * 180.02562 * 23 22 21 46 46 H 1.07993 * 120.02555 * 179.90207 * 24 23 22 47 47 H 1.07991 * 119.89511 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6525 -2.1328 1.1906 6 6 0.4357 -2.5871 1.8683 7 6 0.7701 -2.9982 3.2790 8 1 1.7874 -2.9285 3.6351 9 6 -0.2225 -3.4634 4.1153 10 7 -1.4612 -3.5488 3.6816 11 14 0.1921 -3.9736 5.8637 12 1 0.0593 -2.8017 6.7660 13 1 -0.7400 -5.0435 6.3014 14 1 1.5868 -4.4812 5.9137 15 6 2.4153 -3.0135 0.5132 16 8 2.0451 -4.1609 0.3813 17 6 3.7284 -2.5725 -0.0805 18 1 3.6037 -1.6085 -0.5735 19 6 4.7825 -2.4536 1.0277 20 6 6.0687 -1.8990 0.4102 21 6 6.4001 -2.6645 -0.8457 22 6 7.6873 -2.5895 -1.3518 23 6 8.0250 -3.2751 -2.5021 24 6 7.0758 -4.0407 -3.1543 25 6 5.7924 -4.1201 -2.6541 26 6 5.4492 -3.4325 -1.4941 27 8 4.1782 -3.5426 -1.0275 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6054 -0.2617 2.1370 36 1 3.1263 -0.6443 1.2952 37 1 -0.2927 -1.7766 1.8891 38 1 0.0170 -3.4384 1.3314 39 1 -2.1596 -3.8757 4.2700 40 1 4.4254 -1.7760 1.8033 41 1 4.9757 -3.4363 1.4581 42 1 5.9292 -0.8456 0.1667 43 1 6.8868 -2.0011 1.1232 44 1 8.4301 -1.9916 -0.8448 45 1 9.0302 -3.2135 -2.8922 46 1 7.3388 -4.5759 -4.0547 47 1 5.0519 -4.7179 -3.1645 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840292396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:18 Heat of formation + Delta-G solvation = -61.055979 kcal Electronic energy + Delta-G solvation = -27562.212583 eV Core-core repulsion = 23902.645277 eV Total energy + Delta-G solvation = -3659.567306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.90057 -39.15822 -37.29827 -36.32071 -34.36692 -33.63777 -32.35926 -30.86394 -30.22677 -27.98612 -26.90698 -26.29063 -25.34134 -23.82404 -22.75258 -22.51369 -20.54557 -19.90681 -18.72236 -17.90344 -16.74879 -16.59055 -16.50228 -15.41370 -15.22502 -15.02267 -14.67821 -14.48619 -14.32530 -14.13821 -13.94268 -13.60037 -13.30505 -13.19606 -12.80607 -12.64936 -12.46128 -12.14980 -12.09670 -11.83846 -11.64811 -11.54759 -11.36968 -11.18588 -11.07869 -11.01434 -10.92105 -10.73809 -10.49117 -10.40904 -10.35009 -10.15368 -9.63690 -8.91586 -8.86046 -8.45479 -8.15368 -7.71294 -6.07074 -4.12080 1.23807 1.38317 2.95362 3.24478 3.28034 3.35508 3.40271 3.67975 4.06004 4.41463 4.54363 4.60867 4.68540 4.85183 4.91232 4.99181 5.05557 5.09080 5.12455 5.20105 5.27468 5.35344 5.39055 5.46545 5.51869 5.59900 5.73018 5.75988 5.80979 5.88213 5.93538 6.03122 6.06343 6.07952 6.15293 6.24110 6.25925 6.39671 6.44264 6.49072 6.63624 6.72164 7.01164 7.40426 7.44888 7.54352 7.89221 8.19731 8.30931 8.84392 9.00000 9.52997 11.00854 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.003974 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.283634 B = 7044.952557 C = 7958.290508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.143 4.143 4 C 0.108 3.892 5 N -0.588 5.588 6 C 0.246 3.754 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.516 3.484 16 O -0.518 6.518 17 C 0.074 3.926 18 H 0.090 0.910 19 C -0.151 4.151 20 C -0.075 4.075 21 C -0.164 4.164 22 C -0.085 4.085 23 C -0.159 4.159 24 C -0.089 4.089 25 C -0.149 4.149 26 C 0.140 3.860 27 O -0.288 6.288 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.044 0.956 39 H 0.264 0.736 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.126 0.874 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.669 9.060 -10.414 20.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.137 4.137 3 C -0.201 4.201 4 C -0.016 4.016 5 N -0.320 5.320 6 C 0.128 3.872 7 C -0.569 4.569 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.300 3.700 16 O -0.394 6.394 17 C 0.014 3.986 18 H 0.107 0.893 19 C -0.188 4.188 20 C -0.112 4.112 21 C -0.165 4.165 22 C -0.103 4.103 23 C -0.178 4.178 24 C -0.107 4.107 25 C -0.168 4.168 26 C 0.094 3.906 27 O -0.201 6.201 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.144 0.856 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 15.090 8.225 -10.447 20.112 hybrid contribution 0.273 -0.093 1.130 1.166 sum 15.363 8.133 -9.317 19.722 Atomic orbital electron populations 1.21858 0.94386 1.02974 1.01111 1.21638 0.97389 0.95970 0.98685 1.21780 1.00523 0.95858 1.01959 1.21713 0.99171 0.82327 0.98422 1.48095 1.26603 1.06511 1.50842 1.19402 0.80031 0.96304 0.91495 1.21442 0.94797 1.43876 0.96742 0.92458 1.24920 0.94889 0.95382 0.98788 1.69928 1.00396 1.46471 1.36344 0.86513 0.78382 0.78308 0.84327 1.20634 1.21070 1.19910 1.19602 0.84398 0.86243 0.79738 1.90707 1.71837 1.18526 1.58281 1.22469 0.94319 0.91653 0.90117 0.89254 1.22226 0.94414 1.04253 0.97931 1.20499 0.97846 0.98864 0.93945 1.19873 0.94361 1.03292 0.98953 1.20864 0.94863 0.98595 0.95948 1.20969 0.99624 1.00100 0.97077 1.20899 0.92270 0.98108 0.99418 1.20638 0.97707 1.03270 0.95163 1.18840 0.83780 0.95437 0.92517 1.86098 1.25832 1.50807 1.57324 0.92413 0.93459 0.91499 0.91671 0.92934 0.92703 0.92325 0.89303 0.91694 0.94167 0.93802 0.92677 0.88628 0.89618 0.90268 0.89672 0.85971 0.86109 0.85582 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.34 37.16 0.31 -1.83 16 2 C -0.12 -1.56 2.88 -90.61 -0.26 -1.82 16 3 C -0.14 -1.46 9.19 37.16 0.34 -1.12 16 4 C 0.11 1.66 4.43 -4.04 -0.02 1.64 16 5 N -0.59 -12.02 2.19 -175.06 -0.38 -12.41 16 6 C 0.25 6.23 4.28 -5.19 -0.02 6.21 16 7 C -0.53 -14.64 9.39 -34.44 -0.32 -14.96 16 8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 11 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 C 0.52 11.02 6.93 -10.99 -0.08 10.94 16 16 O -0.52 -13.70 16.13 -13.77 -0.22 -13.92 16 17 C 0.07 1.23 2.35 -27.67 -0.06 1.17 16 18 H 0.09 1.27 6.08 -51.93 -0.32 0.96 16 19 C -0.15 -2.11 5.15 -26.49 -0.14 -2.25 16 20 C -0.07 -0.82 5.86 -27.81 -0.16 -0.98 16 21 C -0.16 -2.08 5.75 -104.44 -0.60 -2.68 16 22 C -0.08 -0.89 9.67 -39.53 -0.38 -1.27 16 23 C -0.16 -1.58 10.04 -39.61 -0.40 -1.98 16 24 C -0.09 -0.94 10.04 -39.66 -0.40 -1.34 16 25 C -0.15 -1.97 9.94 -39.34 -0.39 -2.36 16 26 C 0.14 2.11 6.47 -39.20 -0.25 1.85 16 27 O -0.29 -5.20 9.51 -38.57 -0.37 -5.57 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.18 6.33 -51.93 -0.33 0.85 16 31 H 0.06 0.89 7.05 -51.93 -0.37 0.53 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 1.41 8.03 -51.93 -0.42 1.00 16 36 H 0.06 0.84 4.94 -51.93 -0.26 0.58 16 37 H 0.04 1.01 6.63 -51.93 -0.34 0.67 16 38 H 0.04 1.28 7.35 -51.93 -0.38 0.90 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 40 H 0.10 1.24 6.35 -51.93 -0.33 0.91 16 41 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 47 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 374.38 15.07 5.64 5.64 Total: -1.00 -33.22 374.38 -9.91 -43.13 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.36 Total: 1.08 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -2.93 Total: -9.13 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.35 Total: -37.80 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.59 Total: -19.49 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.22 -9.91 -43.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840292396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.930 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds