Wall clock time and date at job start Tue Mar 31 2020 12:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46862 * 2 1 4 4 C 1.52998 * 109.47091 * 119.99956 * 2 1 3 5 5 N 1.46497 * 109.47375 * 64.99973 * 4 2 1 6 6 C 1.46504 * 120.00179 * 264.35529 * 5 4 2 7 7 C 1.50698 * 109.46751 * 269.99746 * 6 5 4 8 8 H 1.08005 * 120.00309 * 359.97438 * 7 6 5 9 9 C 1.37884 * 120.00280 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99529 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00237 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47145 * 90.00254 * 11 9 7 13 13 H 1.48497 * 109.47164 * 210.00246 * 11 9 7 14 14 H 1.48504 * 109.47335 * 330.00049 * 11 9 7 15 15 C 1.34773 * 119.99974 * 84.34707 * 5 4 2 16 16 O 1.21285 * 120.00314 * 185.40989 * 15 5 4 17 17 C 1.50703 * 119.99899 * 5.41455 * 15 5 4 18 18 H 1.08993 * 109.70960 * 315.74945 * 17 15 5 19 19 C 1.53406 * 109.68226 * 76.29116 * 17 15 5 20 20 C 1.53069 * 108.30033 * 184.42866 * 19 17 15 21 21 C 1.50769 * 109.68024 * 311.79165 * 20 19 17 22 22 C 1.38511 * 118.76159 * 197.82679 * 21 20 19 23 23 C 1.38102 * 120.31123 * 180.15806 * 22 21 20 24 24 C 1.38291 * 119.98847 * 0.02562 * 23 22 21 25 25 C 1.37973 * 119.95716 * 359.92089 * 24 23 22 26 26 C 1.38364 * 121.40392 * 17.83975 * 21 20 19 27 27 O 1.35843 * 121.80852 * 359.48437 * 26 21 20 28 28 H 1.08999 * 109.47042 * 299.99894 * 1 2 3 29 29 H 1.09004 * 109.47118 * 60.00045 * 1 2 3 30 30 H 1.08996 * 109.46934 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47042 * 240.00106 * 2 1 3 32 32 H 1.08995 * 109.46735 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46915 * 300.00210 * 3 2 1 34 34 H 1.08999 * 109.47206 * 60.00206 * 3 2 1 35 35 H 1.09006 * 109.47214 * 305.00049 * 4 2 1 36 36 H 1.08995 * 109.47160 * 185.00288 * 4 2 1 37 37 H 1.08993 * 109.47112 * 29.99032 * 6 5 4 38 38 H 1.09003 * 109.47298 * 150.00042 * 6 5 4 39 39 H 0.96999 * 119.99827 * 180.02562 * 10 9 7 40 40 H 1.09006 * 109.69868 * 304.12987 * 19 17 15 41 41 H 1.09004 * 109.70146 * 64.72387 * 19 17 15 42 42 H 1.09007 * 109.43480 * 71.85092 * 20 19 17 43 43 H 1.09001 * 109.43819 * 191.76279 * 20 19 17 44 44 H 1.07996 * 119.84254 * 0.12895 * 22 21 20 45 45 H 1.07999 * 120.00700 * 180.02562 * 23 22 21 46 46 H 1.07993 * 120.02555 * 179.90207 * 24 23 22 47 47 H 1.07991 * 119.89511 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6525 -2.1328 1.1906 6 6 0.4357 -2.5871 1.8683 7 6 0.7701 -2.9982 3.2790 8 1 1.7874 -2.9285 3.6351 9 6 -0.2225 -3.4634 4.1153 10 7 -1.4612 -3.5488 3.6816 11 14 0.1921 -3.9736 5.8637 12 1 0.0593 -2.8017 6.7660 13 1 -0.7400 -5.0435 6.3014 14 1 1.5868 -4.4812 5.9137 15 6 2.4153 -3.0135 0.5132 16 8 2.0451 -4.1609 0.3813 17 6 3.7284 -2.5725 -0.0805 18 1 3.6037 -1.6085 -0.5735 19 6 4.7825 -2.4536 1.0277 20 6 6.0687 -1.8990 0.4102 21 6 6.4001 -2.6645 -0.8457 22 6 7.6873 -2.5895 -1.3518 23 6 8.0250 -3.2751 -2.5021 24 6 7.0758 -4.0407 -3.1543 25 6 5.7924 -4.1201 -2.6541 26 6 5.4492 -3.4325 -1.4941 27 8 4.1782 -3.5426 -1.0275 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6054 -0.2617 2.1370 36 1 3.1263 -0.6443 1.2952 37 1 -0.2927 -1.7766 1.8891 38 1 0.0170 -3.4384 1.3314 39 1 -2.1596 -3.8757 4.2700 40 1 4.4254 -1.7760 1.8033 41 1 4.9757 -3.4363 1.4581 42 1 5.9292 -0.8456 0.1667 43 1 6.8868 -2.0011 1.1232 44 1 8.4301 -1.9916 -0.8448 45 1 9.0302 -3.2135 -2.8922 46 1 7.3388 -4.5759 -4.0547 47 1 5.0519 -4.7179 -3.1645 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840292396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:17 Heat of formation + Delta-G solvation = -79.441700 kcal Electronic energy + Delta-G solvation = -27563.009848 eV Core-core repulsion = 23902.645277 eV Total energy + Delta-G solvation = -3660.364571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.08526 -40.58656 -38.38600 -37.80439 -35.46904 -35.36339 -34.15769 -32.03533 -31.12599 -29.73871 -27.99247 -27.55467 -26.81783 -24.91872 -24.54358 -23.41000 -21.75896 -20.95984 -20.23051 -19.03737 -18.63707 -18.02219 -17.84355 -16.99246 -16.42528 -16.32178 -16.10619 -15.92200 -15.40192 -15.24357 -15.00020 -14.86829 -14.58702 -14.31577 -14.15874 -14.04515 -13.74185 -13.48930 -13.47004 -13.08127 -12.97849 -12.85892 -12.69819 -12.55096 -12.42863 -12.21470 -12.19875 -12.16438 -12.03799 -11.83678 -11.58003 -11.55134 -11.42057 -10.63875 -10.61126 -9.71305 -9.48998 -9.12236 -8.23407 -6.38219 0.38715 0.47833 1.35347 1.38928 1.48332 1.53972 1.71627 2.36704 2.64764 2.83656 3.06543 3.37242 3.47517 3.70012 3.80801 3.81507 3.88454 4.00598 4.14919 4.16761 4.25949 4.33591 4.48459 4.55416 4.61683 4.63088 4.64782 4.80529 4.82999 4.90802 4.94982 4.99276 5.01798 5.03072 5.10077 5.15138 5.21043 5.26928 5.37786 5.40167 5.47514 5.53826 5.56690 5.61107 5.80337 5.90883 6.04572 6.42489 6.63665 6.71357 7.21370 7.36740 8.83852 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.003974 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.283634 B = 7044.952557 C = 7958.290508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.135 4.135 4 C 0.101 3.899 5 N -0.586 5.586 6 C 0.265 3.735 7 C -0.545 4.545 8 H 0.057 0.943 9 C 0.009 3.991 10 N -0.927 5.927 11 Si 0.967 3.033 12 H -0.260 1.260 13 H -0.283 1.283 14 H -0.273 1.273 15 C 0.504 3.496 16 O -0.587 6.587 17 C 0.087 3.913 18 H 0.117 0.883 19 C -0.147 4.147 20 C -0.067 4.067 21 C -0.171 4.171 22 C -0.083 4.083 23 C -0.152 4.152 24 C -0.089 4.089 25 C -0.172 4.172 26 C 0.099 3.901 27 O -0.327 6.327 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.024 0.976 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.036 0.964 38 H -0.010 1.010 39 H 0.267 0.733 40 H 0.108 0.892 41 H 0.057 0.943 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.156 0.844 45 H 0.155 0.845 46 H 0.152 0.848 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.699 11.912 -10.134 25.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C -0.193 4.193 4 C -0.021 4.021 5 N -0.317 5.317 6 C 0.144 3.856 7 C -0.584 4.584 8 H 0.075 0.925 9 C -0.190 4.190 10 N -0.567 5.567 11 Si 0.791 3.209 12 H -0.185 1.185 13 H -0.209 1.209 14 H -0.198 1.198 15 C 0.292 3.708 16 O -0.467 6.467 17 C 0.027 3.973 18 H 0.135 0.865 19 C -0.185 4.185 20 C -0.103 4.103 21 C -0.172 4.172 22 C -0.101 4.101 23 C -0.170 4.170 24 C -0.106 4.106 25 C -0.190 4.190 26 C 0.055 3.945 27 O -0.241 6.241 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.118 0.882 37 H 0.054 0.946 38 H 0.008 0.992 39 H 0.076 0.924 40 H 0.126 0.874 41 H 0.076 0.924 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.174 0.826 45 H 0.173 0.827 46 H 0.170 0.830 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 19.151 11.144 -10.177 24.383 hybrid contribution -0.960 -1.018 0.929 1.680 sum 18.191 10.126 -9.248 22.781 Atomic orbital electron populations 1.21843 0.95904 1.00461 1.02099 1.21599 0.96072 0.98226 0.97200 1.21733 1.01938 0.92799 1.02843 1.22091 1.01343 0.79116 0.99540 1.48041 1.24980 1.08833 1.49801 1.18832 0.82020 0.94219 0.90526 1.21738 0.94823 1.44148 0.97684 0.92510 1.25851 0.94681 0.95177 1.03334 1.70058 1.01443 1.47172 1.38015 0.85424 0.77906 0.78442 0.79102 1.18488 1.20907 1.19779 1.20610 0.85906 0.85351 0.78968 1.90655 1.73706 1.21474 1.60903 1.22323 0.91871 0.91963 0.91111 0.86549 1.22234 0.95489 1.03374 0.97363 1.20575 0.96384 0.99875 0.93475 1.20145 0.94745 1.02914 0.99391 1.21271 0.94364 0.98411 0.96015 1.21441 1.00772 0.98357 0.96382 1.21239 0.91140 0.98085 1.00169 1.20825 0.99024 1.03804 0.95394 1.19221 0.83180 0.98074 0.94068 1.86030 1.28117 1.51912 1.58063 0.92521 0.91372 0.95714 0.91964 0.90632 0.91484 0.91843 0.89708 0.88217 0.94564 0.99214 0.92429 0.87397 0.92426 0.87267 0.87174 0.82598 0.82719 0.83024 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.35 8.34 71.98 0.60 -3.75 16 2 C -0.11 -2.84 2.88 -10.79 -0.03 -2.87 16 3 C -0.14 -2.29 9.19 71.98 0.66 -1.63 16 4 C 0.10 3.04 4.43 86.38 0.38 3.43 16 5 N -0.59 -25.19 2.19 -826.16 -1.81 -26.99 16 6 C 0.26 14.39 4.28 85.63 0.37 14.76 16 7 C -0.55 -31.40 9.39 25.60 0.24 -31.16 16 8 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 9 C 0.01 0.50 5.46 84.66 0.46 0.97 16 10 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 11 Si 0.97 44.94 29.54 68.60 2.03 46.96 16 12 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 13 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 14 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 15 C 0.50 22.92 6.93 87.66 0.61 23.53 16 16 O -0.59 -33.95 16.13 15.43 0.25 -33.70 16 17 C 0.09 2.91 2.35 29.99 0.07 2.98 16 18 H 0.12 3.18 6.08 -2.39 -0.01 3.17 16 19 C -0.15 -3.96 5.15 30.75 0.16 -3.80 16 20 C -0.07 -1.22 5.86 29.89 0.18 -1.04 16 21 C -0.17 -3.90 5.75 -19.75 -0.11 -4.01 16 22 C -0.08 -1.39 9.67 22.30 0.22 -1.17 16 23 C -0.15 -2.39 10.04 22.25 0.22 -2.17 16 24 C -0.09 -1.69 10.04 22.22 0.22 -1.46 16 25 C -0.17 -4.59 9.94 22.43 0.22 -4.36 16 26 C 0.10 2.98 6.47 22.52 0.15 3.13 16 27 O -0.33 -12.43 9.51 -73.32 -0.70 -13.12 16 28 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.02 0.92 6.33 -2.39 -0.02 0.90 16 31 H 0.06 1.64 7.05 -2.39 -0.02 1.62 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 2.65 8.03 -2.38 -0.02 2.63 16 36 H 0.10 2.31 4.94 -2.39 -0.01 2.29 16 37 H 0.04 1.97 6.63 -2.39 -0.02 1.96 16 38 H -0.01 -0.66 7.35 -2.39 -0.02 -0.68 16 39 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.11 2.56 6.35 -2.38 -0.02 2.55 16 41 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 45 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 46 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 47 H 0.12 3.26 8.06 -2.92 -0.02 3.24 16 Total: -1.00 -80.68 374.38 5.62 -75.06 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.95 Total: 16.59 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 4.61 Total: -8.63 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -1.52 Total: -83.15 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -0.45 Total: -46.82 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -80.68 5.62 -75.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840292396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.381 kcal (2) G-P(sol) polarization free energy of solvation -80.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds