Wall clock time and date at job start Tue Mar 31 2020 12:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47161 * 2 1 4 4 C 1.53000 * 109.47034 * 240.00253 * 2 1 3 5 5 N 1.46900 * 109.47021 * 119.99704 * 2 1 3 6 6 C 1.47958 * 110.99980 * 315.60367 * 5 2 1 7 7 C 1.53934 * 86.18058 * 137.57928 * 6 5 2 8 8 C 1.47967 * 110.99784 * 54.95924 * 5 2 1 9 9 H 1.09002 * 113.85959 * 336.74660 * 8 5 2 10 10 C 1.52999 * 113.75906 * 108.09667 * 8 5 2 11 11 O 1.45204 * 109.46716 * 61.06618 * 10 8 5 12 12 C 1.34705 * 116.99577 * 179.97438 * 11 10 8 13 13 O 1.21466 * 120.00339 * 0.02562 * 12 11 10 14 14 C 1.47774 * 119.99826 * 179.97438 * 12 11 10 15 15 C 1.39961 * 120.02972 * 359.72988 * 14 12 11 16 16 C 1.38320 * 120.35116 * 179.69252 * 15 14 12 17 17 C 1.37756 * 120.41722 * 0.59901 * 16 15 14 18 18 C 1.40748 * 120.05197 * 359.67987 * 17 16 15 19 19 C 1.41437 * 120.17714 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00399 * 333.43651 * 19 18 17 21 21 C 1.39944 * 119.99956 * 153.43161 * 19 18 17 22 22 N 1.30820 * 120.00089 * 347.29707 * 21 19 18 23 23 Si 1.86801 * 119.99778 * 167.29616 * 21 19 18 24 24 H 1.48504 * 109.46878 * 90.00277 * 23 21 19 25 25 H 1.48501 * 109.46924 * 210.00191 * 23 21 19 26 26 H 1.48496 * 109.47110 * 330.00013 * 23 21 19 27 27 C 1.39051 * 120.02915 * 179.97438 * 14 12 11 28 28 H 1.08995 * 109.47423 * 309.12225 * 1 2 3 29 29 H 1.09000 * 109.46958 * 69.11685 * 1 2 3 30 30 H 1.08997 * 109.46984 * 189.11654 * 1 2 3 31 31 H 1.08995 * 109.47218 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.47377 * 299.99963 * 3 2 1 33 33 H 1.09002 * 109.47002 * 59.99788 * 3 2 1 34 34 H 1.08997 * 109.47116 * 299.99689 * 4 2 1 35 35 H 1.08997 * 109.47592 * 60.00035 * 4 2 1 36 36 H 1.09007 * 109.46499 * 180.02562 * 4 2 1 37 37 H 1.08999 * 113.76122 * 23.25899 * 6 5 2 38 38 H 1.09007 * 113.75599 * 251.89604 * 6 5 2 39 39 H 1.09000 * 113.73485 * 221.91073 * 7 6 5 40 40 H 1.09010 * 113.73194 * 90.63815 * 7 6 5 41 41 H 1.08999 * 109.46992 * 181.06323 * 10 8 5 42 42 H 1.08997 * 109.47344 * 301.06881 * 10 8 5 43 43 H 1.08002 * 119.82523 * 359.97438 * 15 14 12 44 44 H 1.08001 * 119.78701 * 180.27970 * 16 15 14 45 45 H 1.08002 * 119.97284 * 179.69422 * 17 16 15 46 46 H 0.96997 * 120.00467 * 179.97438 * 22 21 19 47 47 H 1.08002 * 120.20873 * 0.02562 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0197 -0.6924 1.1995 6 6 1.2659 -0.2699 2.4005 7 6 1.2613 -1.7579 2.7948 8 6 1.4486 -2.0541 1.2959 9 1 0.5120 -2.1789 0.7525 10 6 2.4579 -3.1675 1.0090 11 8 3.5368 -3.1045 1.9787 12 6 4.5154 -4.0231 1.8653 13 8 4.4691 -4.8538 0.9803 14 6 5.6460 -4.0196 2.8169 15 6 5.7035 -3.0586 3.8328 16 6 6.7554 -3.0531 4.7309 17 6 7.7646 -3.9852 4.6289 18 6 7.7271 -4.9559 3.6104 19 6 8.7621 -5.9138 3.5028 20 1 9.7508 -5.6845 3.8721 21 6 8.5051 -7.1589 2.9179 22 7 7.2720 -7.5363 2.6980 23 14 9.9230 -8.2820 2.4512 24 1 10.2517 -9.1667 3.5978 25 1 9.5337 -9.1109 1.2822 26 1 11.1105 -7.4614 2.1027 27 6 6.6563 -4.9680 2.7007 28 1 -0.3634 0.6484 0.7972 29 1 -0.3633 0.3663 -0.9602 30 1 -0.3633 -1.0147 0.1628 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.1301 -0.7215 -1.2490 37 1 0.2758 0.1290 2.1798 38 1 1.8390 0.3624 3.0787 39 1 0.3077 -2.1029 3.1944 40 1 2.1121 -2.0514 3.4097 41 1 1.9614 -4.1352 1.0803 42 1 2.8637 -3.0404 0.0053 43 1 4.9200 -2.3201 3.9186 44 1 6.7883 -2.3101 5.5141 45 1 8.5850 -3.9712 5.3311 46 1 7.0938 -8.3991 2.2923 47 1 6.6185 -5.7089 1.9158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845735428.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:11 Heat of formation + Delta-G solvation = -31.972011 kcal Electronic energy + Delta-G solvation = -26821.778699 eV Core-core repulsion = 23163.472569 eV Total energy + Delta-G solvation = -3658.306131 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.96280 -39.45492 -37.30881 -35.76847 -34.82314 -33.69636 -30.53447 -29.53868 -29.34697 -27.73538 -27.45012 -26.92209 -25.34215 -23.80335 -22.59010 -20.93845 -20.38105 -19.76084 -18.58851 -17.77067 -16.60927 -16.21263 -16.04138 -15.89740 -15.22246 -14.87501 -14.70661 -14.41270 -14.18011 -14.09080 -13.37071 -13.11089 -13.00567 -12.79728 -12.59840 -12.55542 -12.30093 -12.18970 -11.96830 -11.69561 -11.63371 -11.35578 -11.15024 -11.12908 -11.07255 -10.97674 -10.73440 -10.66577 -10.49146 -10.43769 -10.11365 -9.98995 -9.69605 -9.40652 -9.24368 -8.73259 -7.69404 -7.48455 -6.75028 -4.41639 2.05282 2.81797 3.08620 3.11809 3.16350 3.32263 3.65636 3.71516 3.93459 4.46847 4.55230 4.59404 4.64470 4.76091 4.84711 5.03373 5.06391 5.21595 5.29896 5.43404 5.47640 5.53256 5.56395 5.58698 5.59683 5.64109 5.71978 5.81684 5.82534 5.87139 5.97824 6.03846 6.11300 6.17109 6.30618 6.38648 6.46280 6.68104 6.97533 7.00322 7.06974 7.11461 7.22323 7.36127 7.72967 7.80012 7.95842 8.15002 8.48575 8.66782 8.81639 8.83334 10.19109 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022414 B = 0.002928 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.915086 B = 9561.413225 C =10049.739953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.063 3.937 3 C -0.132 4.132 4 C -0.140 4.140 5 N -0.452 5.452 6 C -0.007 4.007 7 C -0.137 4.137 8 C 0.022 3.978 9 H 0.100 0.900 10 C 0.086 3.914 11 O -0.340 6.340 12 C 0.510 3.490 13 O -0.523 6.523 14 C -0.116 4.116 15 C -0.186 4.186 16 C -0.107 4.107 17 C -0.199 4.199 18 C 0.094 3.906 19 C -0.461 4.461 20 H 0.081 0.919 21 C 0.071 3.929 22 N -0.794 5.794 23 Si 0.912 3.088 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.261 1.261 27 C -0.086 4.086 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.283 0.717 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.384 12.070 -3.833 18.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.027 4.027 3 C -0.190 4.190 4 C -0.198 4.198 5 N -0.175 5.175 6 C -0.135 4.135 7 C -0.174 4.174 8 C -0.087 4.087 9 H 0.118 0.882 10 C 0.011 3.989 11 O -0.257 6.257 12 C 0.358 3.642 13 O -0.413 6.413 14 C -0.117 4.117 15 C -0.206 4.206 16 C -0.126 4.126 17 C -0.219 4.219 18 C 0.092 3.908 19 C -0.490 4.490 20 H 0.099 0.901 21 C -0.147 4.147 22 N -0.419 5.419 23 Si 0.737 3.263 24 H -0.195 1.195 25 H -0.200 1.200 26 H -0.185 1.185 27 C -0.106 4.106 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.125 0.875 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.122 0.878 44 H 0.114 0.886 45 H 0.116 0.884 46 H 0.094 0.906 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.848 11.734 -4.263 17.915 hybrid contribution -0.491 -0.698 -0.482 0.980 sum -13.338 11.037 -4.745 17.951 Atomic orbital electron populations 1.22604 0.96971 1.02181 1.02490 1.21560 0.92639 0.95716 0.92741 1.21730 1.02119 0.93887 1.01219 1.21869 1.02310 0.99896 0.95718 1.68882 1.45977 1.01447 1.01154 1.23997 0.98037 0.97704 0.93790 1.23340 1.03128 0.95196 0.95765 1.23719 0.96006 0.90930 0.98057 0.88230 1.22582 0.86818 0.97385 0.92113 1.86608 1.32280 1.53541 1.53228 1.21866 0.81585 0.77378 0.83393 1.90752 1.77496 1.38154 1.34882 1.18864 0.94328 1.01022 0.97484 1.20594 1.00437 1.00856 0.98692 1.20510 0.95148 0.98542 0.98362 1.21210 1.00050 1.00553 1.00099 1.17549 0.92299 0.91633 0.89366 1.19550 0.97325 0.97498 1.34639 0.90111 1.25947 0.96604 0.98842 0.93277 1.69748 1.20110 1.20473 1.31581 0.86243 0.81562 0.79700 0.78830 1.19473 1.20047 1.18463 1.21739 0.93042 0.96451 0.99339 0.91828 0.91935 0.92003 0.91674 0.92552 0.92804 0.92700 0.92323 0.91572 0.90651 0.89421 0.91380 0.87467 0.91299 0.91350 0.87771 0.88615 0.88415 0.90556 0.84424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 7.42 37.16 0.28 -1.18 16 2 C 0.06 0.63 0.72 -131.60 -0.09 0.53 16 3 C -0.13 -1.23 8.59 37.16 0.32 -0.91 16 4 C -0.14 -1.44 8.08 37.16 0.30 -1.14 16 5 N -0.45 -5.41 5.77 -215.10 -1.24 -6.65 16 6 C -0.01 -0.07 7.14 -2.77 -0.02 -0.09 16 7 C -0.14 -1.54 7.69 -25.80 -0.20 -1.73 16 8 C 0.02 0.26 2.59 -66.66 -0.17 0.08 16 9 H 0.10 0.97 5.47 -51.93 -0.28 0.68 16 10 C 0.09 1.31 5.68 37.16 0.21 1.52 16 11 O -0.34 -6.43 7.96 -40.51 -0.32 -6.76 16 12 C 0.51 11.67 7.90 34.63 0.27 11.94 16 13 O -0.52 -13.03 16.12 -19.24 -0.31 -13.34 16 14 C -0.12 -2.83 5.87 -105.05 -0.62 -3.44 16 15 C -0.19 -4.14 9.62 -38.91 -0.37 -4.51 16 16 C -0.11 -2.34 10.01 -39.73 -0.40 -2.74 16 17 C -0.20 -4.75 9.78 -38.81 -0.38 -5.13 16 18 C 0.09 2.49 5.57 -106.87 -0.59 1.90 16 19 C -0.46 -12.11 9.07 -37.73 -0.34 -12.45 16 20 H 0.08 2.01 7.88 -52.49 -0.41 1.60 16 21 C 0.07 1.80 5.23 -17.34 -0.09 1.71 16 22 N -0.79 -21.06 10.80 55.55 0.60 -20.46 16 23 Si 0.91 18.85 29.58 -169.99 -5.03 13.82 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 27 C -0.09 -2.32 8.22 -38.42 -0.32 -2.63 16 28 H 0.06 0.47 6.21 -51.93 -0.32 0.14 16 29 H 0.06 0.45 8.12 -51.93 -0.42 0.02 16 30 H 0.06 0.48 5.55 -51.93 -0.29 0.20 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.48 7.73 -51.93 -0.40 0.07 16 34 H 0.05 0.57 6.55 -51.93 -0.34 0.23 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 37 H 0.08 0.63 5.19 -51.93 -0.27 0.36 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.11 1.47 6.92 -51.92 -0.36 1.11 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.07 1.07 7.06 -51.93 -0.37 0.71 16 43 H 0.10 2.09 7.59 -52.49 -0.40 1.70 16 44 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 45 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 46 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 47 H 0.14 3.97 5.70 -52.49 -0.30 3.67 16 LS Contribution 372.08 15.07 5.61 5.61 Total: -1.00 -29.07 372.08 -10.01 -39.09 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -7.10 Total: 6.97 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -2.22 Total: -18.28 kcal Atomic # 7 Polarization: -26.46 SS G_CDS: -0.64 Total: -27.10 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.63 Total: -20.10 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.07 -10.01 -39.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845735428.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.113 kcal (2) G-P(sol) polarization free energy of solvation -29.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds