Wall clock time and date at job start Tue Mar 31 2020 12:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47161 * 2 1 4 4 C 1.53000 * 109.47034 * 240.00253 * 2 1 3 5 5 N 1.46900 * 109.47021 * 119.99704 * 2 1 3 6 6 C 1.47958 * 110.99980 * 315.60367 * 5 2 1 7 7 C 1.53934 * 86.18058 * 137.57928 * 6 5 2 8 8 C 1.47967 * 110.99784 * 54.95924 * 5 2 1 9 9 H 1.09002 * 113.85959 * 336.74660 * 8 5 2 10 10 C 1.52999 * 113.75906 * 108.09667 * 8 5 2 11 11 O 1.45204 * 109.46716 * 61.06618 * 10 8 5 12 12 C 1.34705 * 116.99577 * 179.97438 * 11 10 8 13 13 O 1.21466 * 120.00339 * 0.02562 * 12 11 10 14 14 C 1.47774 * 119.99826 * 179.97438 * 12 11 10 15 15 C 1.39961 * 120.02972 * 359.72988 * 14 12 11 16 16 C 1.38320 * 120.35116 * 179.69252 * 15 14 12 17 17 C 1.37756 * 120.41722 * 0.59901 * 16 15 14 18 18 C 1.40748 * 120.05197 * 359.67987 * 17 16 15 19 19 C 1.41437 * 120.17714 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00399 * 333.43651 * 19 18 17 21 21 C 1.39944 * 119.99956 * 153.43161 * 19 18 17 22 22 N 1.30820 * 120.00089 * 347.29707 * 21 19 18 23 23 Si 1.86801 * 119.99778 * 167.29616 * 21 19 18 24 24 H 1.48504 * 109.46878 * 90.00277 * 23 21 19 25 25 H 1.48501 * 109.46924 * 210.00191 * 23 21 19 26 26 H 1.48496 * 109.47110 * 330.00013 * 23 21 19 27 27 C 1.39051 * 120.02915 * 179.97438 * 14 12 11 28 28 H 1.08995 * 109.47423 * 309.12225 * 1 2 3 29 29 H 1.09000 * 109.46958 * 69.11685 * 1 2 3 30 30 H 1.08997 * 109.46984 * 189.11654 * 1 2 3 31 31 H 1.08995 * 109.47218 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.47377 * 299.99963 * 3 2 1 33 33 H 1.09002 * 109.47002 * 59.99788 * 3 2 1 34 34 H 1.08997 * 109.47116 * 299.99689 * 4 2 1 35 35 H 1.08997 * 109.47592 * 60.00035 * 4 2 1 36 36 H 1.09007 * 109.46499 * 180.02562 * 4 2 1 37 37 H 1.08999 * 113.76122 * 23.25899 * 6 5 2 38 38 H 1.09007 * 113.75599 * 251.89604 * 6 5 2 39 39 H 1.09000 * 113.73485 * 221.91073 * 7 6 5 40 40 H 1.09010 * 113.73194 * 90.63815 * 7 6 5 41 41 H 1.08999 * 109.46992 * 181.06323 * 10 8 5 42 42 H 1.08997 * 109.47344 * 301.06881 * 10 8 5 43 43 H 1.08002 * 119.82523 * 359.97438 * 15 14 12 44 44 H 1.08001 * 119.78701 * 180.27970 * 16 15 14 45 45 H 1.08002 * 119.97284 * 179.69422 * 17 16 15 46 46 H 0.96997 * 120.00467 * 179.97438 * 22 21 19 47 47 H 1.08002 * 120.20873 * 0.02562 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0197 -0.6924 1.1995 6 6 1.2659 -0.2699 2.4005 7 6 1.2613 -1.7579 2.7948 8 6 1.4486 -2.0541 1.2959 9 1 0.5120 -2.1789 0.7525 10 6 2.4579 -3.1675 1.0090 11 8 3.5368 -3.1045 1.9787 12 6 4.5154 -4.0231 1.8653 13 8 4.4691 -4.8538 0.9803 14 6 5.6460 -4.0196 2.8169 15 6 5.7035 -3.0586 3.8328 16 6 6.7554 -3.0531 4.7309 17 6 7.7646 -3.9852 4.6289 18 6 7.7271 -4.9559 3.6104 19 6 8.7621 -5.9138 3.5028 20 1 9.7508 -5.6845 3.8721 21 6 8.5051 -7.1589 2.9179 22 7 7.2720 -7.5363 2.6980 23 14 9.9230 -8.2820 2.4512 24 1 10.2517 -9.1667 3.5978 25 1 9.5337 -9.1109 1.2822 26 1 11.1105 -7.4614 2.1027 27 6 6.6563 -4.9680 2.7007 28 1 -0.3634 0.6484 0.7972 29 1 -0.3633 0.3663 -0.9602 30 1 -0.3633 -1.0147 0.1628 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.1301 -0.7215 -1.2490 37 1 0.2758 0.1290 2.1798 38 1 1.8390 0.3624 3.0787 39 1 0.3077 -2.1029 3.1944 40 1 2.1121 -2.0514 3.4097 41 1 1.9614 -4.1352 1.0803 42 1 2.8637 -3.0404 0.0053 43 1 4.9200 -2.3201 3.9186 44 1 6.7883 -2.3101 5.5141 45 1 8.5850 -3.9712 5.3311 46 1 7.0938 -8.3991 2.2923 47 1 6.6185 -5.7089 1.9158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845735428.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:10 Heat of formation + Delta-G solvation = -47.604152 kcal Electronic energy + Delta-G solvation = -26822.456560 eV Core-core repulsion = 23163.472569 eV Total energy + Delta-G solvation = -3658.983991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.94336 -41.08215 -39.14118 -37.35811 -35.76209 -35.57859 -32.31821 -31.35414 -30.63890 -28.41229 -28.25530 -27.81923 -27.24752 -25.25312 -23.91957 -22.82452 -21.64552 -21.10512 -19.74453 -19.39764 -18.00829 -17.78268 -17.37897 -17.26561 -16.78191 -16.46389 -15.93976 -15.72212 -15.21191 -15.07771 -14.99234 -14.77330 -14.38168 -14.11448 -13.85040 -13.66299 -13.49744 -13.26405 -13.17591 -12.94992 -12.84618 -12.78437 -12.57418 -12.46584 -12.22125 -12.12719 -12.02912 -11.95131 -11.87726 -11.72367 -11.54694 -11.33333 -11.24853 -11.18714 -11.10626 -9.59686 -9.55177 -9.40353 -8.63368 -6.40540 0.16452 0.98312 1.37812 1.45932 1.53294 1.76625 1.83683 2.20154 2.75628 2.83264 3.58664 3.64114 3.69616 3.82257 3.88580 3.99417 4.09986 4.20240 4.28431 4.31477 4.34060 4.43148 4.52386 4.64699 4.65331 4.73882 4.78069 4.83867 4.86252 4.92892 4.97279 5.01007 5.06362 5.11971 5.14537 5.18614 5.20593 5.30123 5.30206 5.38078 5.47326 5.49051 5.59483 5.84139 5.90485 6.03621 6.23886 6.27467 6.54492 6.85350 6.89849 6.92226 8.32735 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022414 B = 0.002928 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.915086 B = 9561.413225 C =10049.739953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.060 3.940 3 C -0.129 4.129 4 C -0.140 4.140 5 N -0.482 5.482 6 C 0.003 3.997 7 C -0.137 4.137 8 C 0.029 3.971 9 H 0.128 0.872 10 C 0.078 3.922 11 O -0.330 6.330 12 C 0.513 3.487 13 O -0.553 6.553 14 C -0.130 4.130 15 C -0.173 4.173 16 C -0.101 4.101 17 C -0.201 4.201 18 C 0.064 3.936 19 C -0.494 4.494 20 H 0.087 0.913 21 C 0.026 3.974 22 N -0.833 5.833 23 Si 0.986 3.014 24 H -0.258 1.258 25 H -0.273 1.273 26 H -0.255 1.255 27 C -0.120 4.120 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.040 0.960 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.131 0.869 44 H 0.140 0.860 45 H 0.116 0.884 46 H 0.286 0.714 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.771 13.931 -3.112 20.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.029 4.029 3 C -0.187 4.187 4 C -0.198 4.198 5 N -0.206 5.206 6 C -0.125 4.125 7 C -0.175 4.175 8 C -0.080 4.080 9 H 0.145 0.855 10 C 0.004 3.996 11 O -0.246 6.246 12 C 0.361 3.639 13 O -0.446 6.446 14 C -0.131 4.131 15 C -0.192 4.192 16 C -0.119 4.119 17 C -0.221 4.221 18 C 0.062 3.938 19 C -0.524 4.524 20 H 0.105 0.895 21 C -0.187 4.187 22 N -0.459 5.459 23 Si 0.807 3.193 24 H -0.182 1.182 25 H -0.198 1.198 26 H -0.178 1.178 27 C -0.140 4.140 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.059 0.941 37 H 0.118 0.882 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.148 0.852 44 H 0.158 0.842 45 H 0.134 0.866 46 H 0.097 0.903 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.251 13.635 -3.520 20.035 hybrid contribution -0.171 -1.105 -0.691 1.314 sum -14.423 12.531 -4.211 19.564 Atomic orbital electron populations 1.22537 0.94875 1.02641 1.03600 1.21631 0.94239 0.95530 0.91536 1.21710 1.00808 0.93835 1.02312 1.21875 1.00673 1.00119 0.97100 1.68839 1.47369 1.01684 1.02674 1.24019 0.98972 0.96820 0.92669 1.23290 1.03174 0.96253 0.94796 1.23768 0.95478 0.89771 0.99010 0.85503 1.22965 0.86287 0.99468 0.90910 1.86589 1.32217 1.51738 1.54058 1.21716 0.82055 0.77506 0.82639 1.90725 1.78305 1.39535 1.36021 1.19116 0.94391 1.01065 0.98526 1.20943 1.00954 1.00013 0.97307 1.20956 0.93715 0.98467 0.98789 1.21528 1.01097 0.99969 0.99459 1.17911 0.92677 0.92907 0.90316 1.19857 0.97705 0.98415 1.36393 0.89531 1.26869 0.99138 1.00151 0.92578 1.69858 1.22307 1.21102 1.32649 0.85138 0.77984 0.77537 0.78683 1.18242 1.19794 1.17827 1.21538 0.95064 0.97576 0.99817 0.90753 0.90830 0.91750 0.93725 0.90998 0.92149 0.93115 0.90555 0.94120 0.88177 0.89759 0.89102 0.90158 0.91044 0.92279 0.85157 0.84178 0.86623 0.90333 0.87490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 7.42 71.98 0.53 -1.66 16 2 C 0.06 1.07 0.72 3.53 0.00 1.07 16 3 C -0.13 -2.16 8.59 71.98 0.62 -1.54 16 4 C -0.14 -2.75 8.08 71.98 0.58 -2.17 16 5 N -0.48 -10.73 5.77 -834.43 -4.81 -15.54 16 6 C 0.00 0.05 7.14 86.41 0.62 0.67 16 7 C -0.14 -2.79 7.69 31.24 0.24 -2.55 16 8 C 0.03 0.62 2.59 45.01 0.12 0.74 16 9 H 0.13 2.09 5.47 -2.39 -0.01 2.08 16 10 C 0.08 2.38 5.68 71.98 0.41 2.79 16 11 O -0.33 -12.59 7.96 -56.15 -0.45 -13.04 16 12 C 0.51 24.20 7.90 70.34 0.56 24.76 16 13 O -0.55 -28.98 16.12 19.95 0.32 -28.66 16 14 C -0.13 -6.49 5.87 -20.14 -0.12 -6.61 16 15 C -0.17 -7.48 9.62 22.71 0.22 -7.26 16 16 C -0.10 -4.19 10.01 22.18 0.22 -3.97 16 17 C -0.20 -9.45 9.78 22.77 0.22 -9.23 16 18 C 0.06 3.50 5.57 -21.32 -0.12 3.38 16 19 C -0.49 -26.80 9.07 23.47 0.21 -26.59 16 20 H 0.09 4.40 7.88 -2.91 -0.02 4.37 16 21 C 0.03 1.38 5.23 85.26 0.45 1.82 16 22 N -0.83 -46.38 10.80 21.83 0.24 -46.14 16 23 Si 0.99 39.51 29.58 68.60 2.03 41.54 16 24 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 25 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 26 H -0.25 -9.83 7.11 99.48 0.71 -9.13 16 27 C -0.12 -6.77 8.22 23.02 0.19 -6.58 16 28 H 0.07 0.77 6.21 -2.39 -0.01 0.76 16 29 H 0.07 0.77 8.12 -2.39 -0.02 0.76 16 30 H 0.06 0.77 5.55 -2.39 -0.01 0.75 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.06 0.92 7.73 -2.39 -0.02 0.90 16 34 H 0.05 1.01 6.55 -2.39 -0.02 1.00 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 36 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.10 1.26 5.19 -2.39 -0.01 1.25 16 38 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 39 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.08 2.09 6.92 -2.38 -0.02 2.07 16 41 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.06 1.91 7.06 -2.39 -0.02 1.89 16 43 H 0.13 4.93 7.59 -2.91 -0.02 4.91 16 44 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 45 H 0.12 4.92 8.06 -2.91 -0.02 4.90 16 46 H 0.29 14.67 8.30 -92.71 -0.77 13.90 16 47 H 0.11 6.63 5.70 -2.91 -0.02 6.61 16 Total: -1.00 -66.53 372.08 3.24 -63.29 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.97 Total: 31.49 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 4.95 Total: -32.93 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -4.58 Total: -61.69 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -0.13 Total: -41.70 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -66.53 3.24 -63.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845735428.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.686 kcal (2) G-P(sol) polarization free energy of solvation -66.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds