Wall clock time and date at job start Tue Mar 31 2020 12:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 119.99987 * 2 1 4 4 N 1.46501 * 109.47435 * 124.99924 * 3 2 1 5 5 C 1.34777 * 119.99868 * 89.99578 * 4 3 2 6 6 O 1.21283 * 120.00510 * 356.14937 * 5 4 3 7 7 C 1.50703 * 119.99905 * 176.14883 * 5 4 3 8 8 C 1.50695 * 109.47110 * 187.73604 * 7 5 4 9 9 C 1.38323 * 119.96371 * 270.01483 * 8 7 5 10 10 C 1.38279 * 120.14275 * 179.97438 * 9 8 7 11 11 C 1.38129 * 120.06504 * 359.68827 * 10 9 8 12 12 C 1.38859 * 119.92704 * 0.58818 * 11 10 9 13 13 O 1.35753 * 120.06525 * 179.70259 * 12 11 10 14 14 C 1.34821 * 117.00174 * 354.03677 * 13 12 11 15 15 H 1.07998 * 120.00091 * 5.02600 * 14 13 12 16 16 C 1.38658 * 120.00476 * 185.02374 * 14 13 12 17 17 N 1.31559 * 119.99363 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00473 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47088 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47032 * 120.00083 * 18 16 14 21 21 H 1.48497 * 109.47296 * 239.99899 * 18 16 14 22 22 C 1.38076 * 119.96984 * 89.99847 * 8 7 5 23 23 C 1.46493 * 119.99676 * 269.99948 * 4 3 2 24 24 C 1.52997 * 109.47122 * 253.72337 * 23 4 3 25 25 C 1.52997 * 109.47460 * 13.72757 * 23 4 3 26 26 C 1.53005 * 109.47266 * 133.72902 * 23 4 3 27 27 H 1.07997 * 119.99874 * 0.02562 * 1 2 3 28 28 H 1.08008 * 119.99944 * 180.02562 * 1 2 3 29 29 H 1.08005 * 120.00226 * 179.97438 * 2 1 3 30 30 H 1.08992 * 109.47267 * 4.99309 * 3 2 1 31 31 H 1.09008 * 109.46639 * 244.99466 * 3 2 1 32 32 H 1.08997 * 109.47511 * 67.72874 * 7 5 4 33 33 H 1.09000 * 109.46843 * 307.73260 * 7 5 4 34 34 H 1.08000 * 119.92905 * 359.97438 * 9 8 7 35 35 H 1.07990 * 119.96889 * 179.97438 * 10 9 8 36 36 H 1.07998 * 120.03667 * 180.31643 * 11 10 9 37 37 H 0.97006 * 119.99834 * 179.97438 * 17 16 14 38 38 H 1.08004 * 120.03388 * 0.04429 * 22 8 7 39 39 H 1.09001 * 109.47086 * 68.85596 * 24 23 4 40 40 H 1.09000 * 109.47673 * 188.85223 * 24 23 4 41 41 H 1.08996 * 109.47865 * 308.85627 * 24 23 4 42 42 H 1.09009 * 109.47183 * 60.00102 * 25 23 4 43 43 H 1.09005 * 109.47089 * 180.02562 * 25 23 4 44 44 H 1.08997 * 109.47098 * 299.99985 * 25 23 4 45 45 H 1.09000 * 109.47244 * 84.13774 * 26 23 4 46 46 H 1.08996 * 109.47202 * 204.14429 * 26 23 4 47 47 H 1.09000 * 109.46844 * 324.14674 * 26 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.2497 0.8662 0.9824 6 8 4.5887 0.3610 -0.0668 7 6 5.2329 0.9731 2.1195 8 6 6.6010 0.5605 1.6411 9 6 6.9941 -0.7627 1.7304 10 6 8.2485 -1.1455 1.2921 11 6 9.1106 -0.2080 0.7574 12 6 8.7211 1.1220 0.6717 13 8 9.5684 2.0467 0.1523 14 6 10.8162 1.6335 -0.1476 15 1 11.0780 0.5904 -0.0487 16 6 11.7635 2.5477 -0.5829 17 7 11.4445 3.8183 -0.7038 18 14 13.4922 1.9751 -0.9990 19 1 13.5937 0.5095 -0.7823 20 1 13.7880 2.2865 -2.4205 21 1 14.4688 2.6739 -0.1255 22 6 7.4607 1.5035 1.1137 23 6 2.5588 1.8650 2.4247 24 6 3.1965 3.2372 2.6513 25 6 1.0351 2.0031 2.4331 26 6 2.9906 0.9115 3.5407 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3586 2.1316 0.0894 31 1 2.6214 1.4025 -0.9314 32 1 4.9199 0.3190 2.9333 33 1 5.2674 2.0032 2.4742 34 1 6.3199 -1.4984 2.1434 35 1 8.5527 -2.1792 1.3635 36 1 10.0882 -0.5084 0.4105 37 1 12.1073 4.4579 -1.0080 38 1 7.1534 2.5365 1.0446 39 1 2.7692 3.9563 1.9525 40 1 3.0024 3.5640 3.6729 41 1 4.2723 3.1691 2.4900 42 1 0.5808 1.0255 2.2718 43 1 0.7116 2.4002 3.3953 44 1 0.7275 2.6824 1.6382 45 1 4.0211 1.1264 3.8238 46 1 2.3407 1.0460 4.4053 47 1 2.9179 -0.1172 3.1879 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857651200.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:13 Heat of formation + Delta-G solvation = 0.927232 kcal Electronic energy + Delta-G solvation = -26851.259993 eV Core-core repulsion = 23194.380481 eV Total energy + Delta-G solvation = -3656.879512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.66497 -38.88037 -37.33006 -36.39219 -34.90098 -32.33014 -31.93578 -31.79231 -29.34135 -28.52916 -27.62556 -26.46069 -25.73226 -25.08077 -21.93060 -21.48083 -20.59498 -20.28062 -18.59012 -17.67436 -17.00396 -16.61559 -16.26617 -15.60048 -15.11654 -14.86745 -14.64761 -14.37330 -14.20576 -14.15297 -13.85519 -13.50250 -13.41507 -13.32801 -12.75283 -12.70188 -12.52577 -12.38118 -12.24948 -11.98479 -11.83193 -11.64751 -11.57179 -11.33807 -11.22312 -11.03159 -10.99540 -10.77572 -10.54278 -10.46166 -10.32923 -9.78577 -9.45830 -9.25942 -8.77713 -8.71565 -7.97564 -7.13895 -6.38203 -3.96933 1.93582 2.20713 2.47551 2.81118 3.08226 3.17242 3.17768 3.23453 4.02150 4.37308 4.50934 4.57627 4.73122 4.74521 4.84587 4.98178 5.05841 5.17503 5.18786 5.23299 5.29813 5.33774 5.39287 5.48611 5.52254 5.58398 5.61140 5.66920 5.73161 5.75687 5.80292 5.83128 5.96426 6.01341 6.11811 6.25608 6.35581 6.40178 6.41326 6.64657 6.74263 6.99499 7.14890 7.35226 7.41169 7.45459 7.51558 7.91123 8.07367 8.36466 9.07899 9.79634 10.80331 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021657 B = 0.002836 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.560712 B = 9869.932385 C =10032.434445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.154 4.154 3 C 0.137 3.863 4 N -0.610 5.610 5 C 0.520 3.480 6 O -0.517 6.517 7 C -0.113 4.113 8 C -0.034 4.034 9 C -0.194 4.194 10 C -0.075 4.075 11 C -0.231 4.231 12 C 0.155 3.845 13 O -0.181 6.181 14 C -0.389 4.389 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.865 5.865 18 Si 0.940 3.060 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.178 4.178 23 C 0.164 3.836 24 C -0.172 4.172 25 C -0.155 4.155 26 C -0.179 4.179 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.126 0.874 37 H 0.268 0.732 38 H 0.112 0.888 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.081 0.919 46 H 0.068 0.932 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.094 -4.132 8.693 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.174 4.174 3 C 0.015 3.985 4 N -0.345 5.345 5 C 0.308 3.692 6 O -0.391 6.391 7 C -0.152 4.152 8 C -0.034 4.034 9 C -0.213 4.213 10 C -0.093 4.093 11 C -0.250 4.250 12 C 0.102 3.898 13 O -0.085 6.085 14 C -0.466 4.466 15 H 0.109 0.891 16 C -0.166 4.166 17 N -0.501 5.501 18 Si 0.765 3.235 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.197 4.197 23 C 0.079 3.921 24 C -0.230 4.230 25 C -0.212 4.212 26 C -0.237 4.237 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.130 0.870 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.143 0.857 37 H 0.078 0.922 38 H 0.130 0.870 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.100 0.900 46 H 0.087 0.913 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.796 -3.940 7.985 22.622 hybrid contribution 0.806 -0.363 -0.274 0.925 sum -19.990 -4.303 7.711 21.854 Atomic orbital electron populations 1.23791 0.95650 1.01739 1.01855 1.23373 0.95981 0.99443 0.98568 1.20557 0.92247 0.95042 0.90672 1.48213 1.11721 1.63409 1.11167 1.20673 0.81674 0.77232 0.89576 1.90742 1.77344 1.42129 1.28918 1.21445 0.92119 1.04347 0.97271 1.18774 0.92653 0.93481 0.98524 1.20333 0.97212 0.94728 1.08988 1.20678 0.93629 0.97954 0.97053 1.21170 1.01871 0.93232 1.08753 1.19270 0.90641 0.88893 0.90991 1.83973 1.21687 1.33946 1.68885 1.21360 0.84423 0.95190 1.45592 0.89111 1.25269 0.99572 0.94843 0.96905 1.70056 1.34853 1.01540 1.43621 0.85657 0.80606 0.78851 0.78370 1.19136 1.20212 1.20200 1.19946 0.93490 0.99134 1.07151 1.20430 0.95067 0.93538 0.83076 1.22493 1.02185 0.95922 1.02380 1.22231 0.93498 1.02934 1.02585 1.22794 1.03313 0.99600 0.97979 0.88606 0.88530 0.87291 0.89961 0.89136 0.87010 0.87936 0.88050 0.87532 0.85656 0.92204 0.86984 0.92053 0.91182 0.91064 0.91278 0.91244 0.91906 0.90018 0.91325 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.49 13.15 29.01 0.38 -1.11 16 2 C -0.15 -1.54 9.05 -36.03 -0.33 -1.86 16 3 C 0.14 1.47 5.19 -5.19 -0.03 1.44 16 4 N -0.61 -7.03 2.37 -160.19 -0.38 -7.41 16 5 C 0.52 7.99 7.11 -10.98 -0.08 7.91 16 6 O -0.52 -10.36 15.67 5.56 0.09 -10.28 16 7 C -0.11 -1.60 3.55 -29.04 -0.10 -1.71 16 8 C -0.03 -0.64 4.38 -104.65 -0.46 -1.10 16 9 C -0.19 -3.63 9.70 -39.53 -0.38 -4.01 16 10 C -0.07 -1.48 10.04 -39.61 -0.40 -1.88 16 11 C -0.23 -5.35 9.17 -39.39 -0.36 -5.71 16 12 C 0.16 3.96 6.65 -39.11 -0.26 3.71 16 13 O -0.18 -5.38 9.76 0.06 0.00 -5.37 16 14 C -0.39 -11.25 9.49 30.89 0.29 -10.96 16 15 H 0.09 2.44 5.21 -52.49 -0.27 2.17 16 16 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 17 N -0.87 -25.98 13.67 55.48 0.76 -25.22 16 18 Si 0.94 21.10 29.55 -169.99 -5.02 16.08 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 C -0.18 -4.00 9.65 -39.40 -0.38 -4.38 16 23 C 0.16 1.39 1.00 -131.82 -0.13 1.26 16 24 C -0.17 -1.43 8.44 37.16 0.31 -1.12 16 25 C -0.16 -1.01 7.27 37.16 0.27 -0.74 16 26 C -0.18 -1.39 7.09 37.16 0.26 -1.12 16 27 H 0.10 0.61 7.84 -52.49 -0.41 0.20 16 28 H 0.10 0.67 8.06 -52.48 -0.42 0.25 16 29 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 30 H 0.08 0.68 5.69 -51.93 -0.30 0.39 16 31 H 0.09 1.17 7.48 -51.92 -0.39 0.78 16 32 H 0.11 1.29 5.12 -51.93 -0.27 1.02 16 33 H 0.10 1.29 4.80 -51.93 -0.25 1.04 16 34 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.13 2.88 5.64 -52.49 -0.30 2.59 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.11 2.44 8.06 -52.48 -0.42 2.02 16 39 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 40 H 0.07 0.46 8.12 -51.93 -0.42 0.03 16 41 H 0.07 0.70 5.06 -51.93 -0.26 0.44 16 42 H 0.07 0.48 6.22 -51.92 -0.32 0.15 16 43 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 44 H 0.06 0.39 6.47 -51.93 -0.34 0.06 16 45 H 0.08 0.64 4.88 -51.93 -0.25 0.39 16 46 H 0.07 0.41 7.90 -51.93 -0.41 0.00 16 47 H 0.06 0.56 7.82 -51.93 -0.41 0.16 16 LS Contribution 371.84 15.07 5.60 5.60 Total: -1.00 -34.44 371.84 -7.12 -41.56 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.69 Total: 5.46 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -1.48 Total: -20.41 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 0.38 Total: -32.64 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.09 Total: -15.65 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.44 -7.12 -41.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857651200.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.485 kcal (2) G-P(sol) polarization free energy of solvation -34.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds