Wall clock time and date at job start Tue Mar 31 2020 12:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 119.99987 * 2 1 4 4 N 1.46501 * 109.47435 * 124.99924 * 3 2 1 5 5 C 1.34777 * 119.99868 * 89.99578 * 4 3 2 6 6 O 1.21283 * 120.00510 * 356.14937 * 5 4 3 7 7 C 1.50703 * 119.99905 * 176.14883 * 5 4 3 8 8 C 1.50695 * 109.47110 * 187.73604 * 7 5 4 9 9 C 1.38323 * 119.96371 * 270.01483 * 8 7 5 10 10 C 1.38279 * 120.14275 * 179.97438 * 9 8 7 11 11 C 1.38129 * 120.06504 * 359.68827 * 10 9 8 12 12 C 1.38859 * 119.92704 * 0.58818 * 11 10 9 13 13 O 1.35753 * 120.06525 * 179.70259 * 12 11 10 14 14 C 1.34821 * 117.00174 * 354.03677 * 13 12 11 15 15 H 1.07998 * 120.00091 * 5.02600 * 14 13 12 16 16 C 1.38658 * 120.00476 * 185.02374 * 14 13 12 17 17 N 1.31559 * 119.99363 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00473 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47088 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47032 * 120.00083 * 18 16 14 21 21 H 1.48497 * 109.47296 * 239.99899 * 18 16 14 22 22 C 1.38076 * 119.96984 * 89.99847 * 8 7 5 23 23 C 1.46493 * 119.99676 * 269.99948 * 4 3 2 24 24 C 1.52997 * 109.47122 * 253.72337 * 23 4 3 25 25 C 1.52997 * 109.47460 * 13.72757 * 23 4 3 26 26 C 1.53005 * 109.47266 * 133.72902 * 23 4 3 27 27 H 1.07997 * 119.99874 * 0.02562 * 1 2 3 28 28 H 1.08008 * 119.99944 * 180.02562 * 1 2 3 29 29 H 1.08005 * 120.00226 * 179.97438 * 2 1 3 30 30 H 1.08992 * 109.47267 * 4.99309 * 3 2 1 31 31 H 1.09008 * 109.46639 * 244.99466 * 3 2 1 32 32 H 1.08997 * 109.47511 * 67.72874 * 7 5 4 33 33 H 1.09000 * 109.46843 * 307.73260 * 7 5 4 34 34 H 1.08000 * 119.92905 * 359.97438 * 9 8 7 35 35 H 1.07990 * 119.96889 * 179.97438 * 10 9 8 36 36 H 1.07998 * 120.03667 * 180.31643 * 11 10 9 37 37 H 0.97006 * 119.99834 * 179.97438 * 17 16 14 38 38 H 1.08004 * 120.03388 * 0.04429 * 22 8 7 39 39 H 1.09001 * 109.47086 * 68.85596 * 24 23 4 40 40 H 1.09000 * 109.47673 * 188.85223 * 24 23 4 41 41 H 1.08996 * 109.47865 * 308.85627 * 24 23 4 42 42 H 1.09009 * 109.47183 * 60.00102 * 25 23 4 43 43 H 1.09005 * 109.47089 * 180.02562 * 25 23 4 44 44 H 1.08997 * 109.47098 * 299.99985 * 25 23 4 45 45 H 1.09000 * 109.47244 * 84.13774 * 26 23 4 46 46 H 1.08996 * 109.47202 * 204.14429 * 26 23 4 47 47 H 1.09000 * 109.46844 * 324.14674 * 26 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.2497 0.8662 0.9824 6 8 4.5887 0.3610 -0.0668 7 6 5.2329 0.9731 2.1195 8 6 6.6010 0.5605 1.6411 9 6 6.9941 -0.7627 1.7304 10 6 8.2485 -1.1455 1.2921 11 6 9.1106 -0.2080 0.7574 12 6 8.7211 1.1220 0.6717 13 8 9.5684 2.0467 0.1523 14 6 10.8162 1.6335 -0.1476 15 1 11.0780 0.5904 -0.0487 16 6 11.7635 2.5477 -0.5829 17 7 11.4445 3.8183 -0.7038 18 14 13.4922 1.9751 -0.9990 19 1 13.5937 0.5095 -0.7823 20 1 13.7880 2.2865 -2.4205 21 1 14.4688 2.6739 -0.1255 22 6 7.4607 1.5035 1.1137 23 6 2.5588 1.8650 2.4247 24 6 3.1965 3.2372 2.6513 25 6 1.0351 2.0031 2.4331 26 6 2.9906 0.9115 3.5407 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3586 2.1316 0.0894 31 1 2.6214 1.4025 -0.9314 32 1 4.9199 0.3190 2.9333 33 1 5.2674 2.0032 2.4742 34 1 6.3199 -1.4984 2.1434 35 1 8.5527 -2.1792 1.3635 36 1 10.0882 -0.5084 0.4105 37 1 12.1073 4.4579 -1.0080 38 1 7.1534 2.5365 1.0446 39 1 2.7692 3.9563 1.9525 40 1 3.0024 3.5640 3.6729 41 1 4.2723 3.1691 2.4900 42 1 0.5808 1.0255 2.2718 43 1 0.7116 2.4002 3.3953 44 1 0.7275 2.6824 1.6382 45 1 4.0211 1.1264 3.8238 46 1 2.3407 1.0460 4.4053 47 1 2.9179 -0.1172 3.1879 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857651200.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:11 Heat of formation + Delta-G solvation = -19.963035 kcal Electronic energy + Delta-G solvation = -26852.165863 eV Core-core repulsion = 23194.380481 eV Total energy + Delta-G solvation = -3657.785382 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.73313 -40.64169 -38.58770 -37.99576 -35.71930 -34.33339 -33.40870 -32.66448 -30.98525 -29.73891 -28.25981 -27.62303 -27.08961 -26.53799 -23.36158 -23.01420 -22.01691 -21.02915 -19.70746 -19.41414 -18.81911 -17.61753 -17.28395 -16.86796 -16.62587 -16.25357 -16.08836 -15.65831 -15.48567 -15.38254 -15.20477 -14.88217 -14.62637 -14.26122 -14.15496 -13.98031 -13.63939 -13.44366 -13.38626 -13.05424 -12.90771 -12.76962 -12.58622 -12.45930 -12.44601 -12.32690 -12.22223 -12.11289 -12.00890 -11.83258 -11.45118 -11.17488 -10.94953 -10.80569 -10.29195 -9.68382 -9.62391 -8.99117 -8.47702 -6.16270 0.50073 0.74113 1.24513 1.33573 1.42497 1.52503 1.63694 2.15696 2.17730 2.82088 3.14376 3.41845 3.60533 3.81226 3.90202 3.93618 4.01110 4.08806 4.14367 4.19690 4.27709 4.33019 4.49323 4.53669 4.57538 4.67063 4.71049 4.75080 4.79122 4.85525 4.88452 4.98998 5.01137 5.04832 5.11093 5.12705 5.26814 5.28340 5.32289 5.43810 5.60423 5.63354 5.69506 5.71353 5.74293 5.85584 6.02175 6.20949 6.44055 6.96847 7.23062 7.78188 8.76143 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021657 B = 0.002836 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.560712 B = 9869.932385 C =10032.434445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.180 4.180 3 C 0.136 3.864 4 N -0.599 5.599 5 C 0.517 3.483 6 O -0.577 6.577 7 C -0.109 4.109 8 C -0.027 4.027 9 C -0.180 4.180 10 C -0.072 4.072 11 C -0.246 4.246 12 C 0.115 3.885 13 O -0.234 6.234 14 C -0.414 4.414 15 H 0.100 0.900 16 C -0.024 4.024 17 N -0.922 5.922 18 Si 1.021 2.979 19 H -0.252 1.252 20 H -0.269 1.269 21 H -0.265 1.265 22 C -0.196 4.196 23 C 0.155 3.845 24 C -0.173 4.173 25 C -0.151 4.151 26 C -0.181 4.181 27 H 0.117 0.883 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.058 0.942 32 H 0.148 0.852 33 H 0.120 0.880 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.119 0.881 37 H 0.273 0.727 38 H 0.104 0.896 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.094 0.906 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.670 -5.804 10.874 26.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.199 4.199 3 C 0.014 3.986 4 N -0.332 5.332 5 C 0.306 3.694 6 O -0.457 6.457 7 C -0.148 4.148 8 C -0.027 4.027 9 C -0.198 4.198 10 C -0.090 4.090 11 C -0.265 4.265 12 C 0.065 3.935 13 O -0.141 6.141 14 C -0.490 4.490 15 H 0.117 0.883 16 C -0.221 4.221 17 N -0.560 5.560 18 Si 0.840 3.160 19 H -0.175 1.175 20 H -0.194 1.194 21 H -0.190 1.190 22 C -0.215 4.215 23 C 0.072 3.928 24 C -0.230 4.230 25 C -0.208 4.208 26 C -0.238 4.238 27 H 0.135 0.865 28 H 0.127 0.873 29 H 0.103 0.897 30 H 0.128 0.872 31 H 0.076 0.924 32 H 0.166 0.834 33 H 0.137 0.863 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.137 0.863 37 H 0.082 0.918 38 H 0.122 0.878 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.110 0.890 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.113 0.887 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.454 -5.625 10.220 26.195 hybrid contribution 1.221 0.058 -0.816 1.470 sum -22.233 -5.567 9.404 24.774 Atomic orbital electron populations 1.24010 0.94619 1.03272 0.97903 1.23090 0.96684 0.97895 1.02243 1.20629 0.92136 0.96747 0.89070 1.48306 1.10578 1.61608 1.12701 1.20806 0.82929 0.76873 0.88812 1.90721 1.78663 1.45287 1.30982 1.21615 0.89119 1.06278 0.97741 1.19280 0.94069 0.93140 0.96227 1.20924 0.97123 0.95266 1.06532 1.21125 0.93353 0.99125 0.95372 1.21292 1.02499 0.93010 1.09743 1.19837 0.91388 0.89753 0.92557 1.83933 1.22627 1.35960 1.71595 1.21866 0.84904 0.96003 1.46219 0.88263 1.26619 1.04367 0.94785 0.96346 1.70201 1.36825 1.03174 1.45838 0.84508 0.74078 0.79092 0.78360 1.17548 1.19381 1.18994 1.20192 0.93339 0.99893 1.08071 1.20777 0.96747 0.93645 0.81636 1.22503 1.00731 0.95870 1.03916 1.22224 0.91419 1.03155 1.04045 1.22787 1.03853 0.98742 0.98405 0.86521 0.87348 0.89676 0.87171 0.92411 0.83428 0.86273 0.83950 0.83637 0.86338 0.91840 0.87767 0.92199 0.88726 0.93063 0.91339 0.89050 0.91538 0.90172 0.88725 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 13.15 67.78 0.89 -1.12 16 2 C -0.18 -3.38 9.05 25.64 0.23 -3.15 16 3 C 0.14 2.83 5.19 85.63 0.44 3.27 16 4 N -0.60 -13.17 2.37 -779.09 -1.85 -15.02 16 5 C 0.52 15.74 7.11 87.66 0.62 16.37 16 6 O -0.58 -23.85 15.67 -3.04 -0.05 -23.90 16 7 C -0.11 -2.95 3.55 29.10 0.10 -2.85 16 8 C -0.03 -1.00 4.38 -19.88 -0.09 -1.08 16 9 C -0.18 -6.34 9.70 22.30 0.22 -6.13 16 10 C -0.07 -2.74 10.04 22.25 0.22 -2.52 16 11 C -0.25 -11.72 9.17 22.39 0.21 -11.51 16 12 C 0.11 6.21 6.65 22.58 0.15 6.36 16 13 O -0.23 -14.98 9.76 -22.69 -0.22 -15.20 16 14 C -0.41 -25.33 9.49 67.92 0.64 -24.69 16 15 H 0.10 5.62 5.21 -2.91 -0.02 5.61 16 16 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16 17 N -0.92 -58.47 13.67 21.61 0.30 -58.17 16 18 Si 1.02 44.53 29.55 68.60 2.03 46.56 16 19 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 22 C -0.20 -9.22 9.65 22.39 0.22 -9.00 16 23 C 0.16 2.20 1.00 3.60 0.00 2.21 16 24 C -0.17 -2.47 8.44 71.98 0.61 -1.86 16 25 C -0.15 -1.39 7.27 71.98 0.52 -0.86 16 26 C -0.18 -2.14 7.09 71.98 0.51 -1.63 16 27 H 0.12 1.01 7.84 -2.91 -0.02 0.98 16 28 H 0.11 1.15 8.06 -2.91 -0.02 1.12 16 29 H 0.09 2.01 8.06 -2.91 -0.02 1.99 16 30 H 0.11 1.61 5.69 -2.39 -0.01 1.60 16 31 H 0.06 1.58 7.48 -2.38 -0.02 1.56 16 32 H 0.15 2.92 5.12 -2.39 -0.01 2.91 16 33 H 0.12 2.87 4.80 -2.39 -0.01 2.85 16 34 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 35 H 0.15 4.38 8.06 -2.92 -0.02 4.36 16 36 H 0.12 5.67 5.64 -2.91 -0.02 5.66 16 37 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 38 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 39 H 0.06 0.87 8.12 -2.39 -0.02 0.85 16 40 H 0.09 0.90 8.12 -2.39 -0.02 0.88 16 41 H 0.05 0.95 5.06 -2.39 -0.01 0.94 16 42 H 0.07 0.67 6.22 -2.38 -0.01 0.66 16 43 H 0.09 0.49 8.12 -2.38 -0.02 0.47 16 44 H 0.07 0.57 6.47 -2.39 -0.02 0.56 16 45 H 0.08 0.97 4.88 -2.39 -0.01 0.95 16 46 H 0.09 0.67 7.90 -2.39 -0.02 0.65 16 47 H 0.06 0.80 7.82 -2.39 -0.02 0.78 16 Total: -1.00 -83.23 371.84 7.15 -76.08 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: 0.97 Total: 28.80 kcal Atomic # 6 Polarization: -45.13 SS G_CDS: 5.97 Total: -39.15 kcal Atomic # 7 Polarization: -71.64 SS G_CDS: -1.55 Total: -73.19 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -0.27 Total: -39.09 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -83.23 7.15 -76.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857651200.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.117 kcal (2) G-P(sol) polarization free energy of solvation -83.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds