Wall clock time and date at job start Tue Mar 31 2020 11:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 119.99756 * 2 1 4 4 C 1.50701 * 119.99921 * 179.97438 * 2 1 3 5 5 C 1.52992 * 109.47402 * 95.00333 * 4 2 1 6 6 H 1.09006 * 109.47364 * 54.99382 * 5 4 2 7 7 C 1.52999 * 109.47457 * 174.99813 * 5 4 2 8 8 O 1.42900 * 109.46956 * 54.99580 * 7 5 4 9 9 N 1.46505 * 109.46995 * 295.00036 * 5 4 2 10 10 C 1.34770 * 120.00096 * 155.00131 * 9 5 4 11 11 O 1.21282 * 120.00471 * 359.97438 * 10 9 5 12 12 C 1.50700 * 120.00252 * 179.97438 * 10 9 5 13 13 C 1.52994 * 109.47505 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.47674 * 305.00018 * 13 12 10 15 15 C 1.50703 * 109.47113 * 64.99927 * 13 12 10 16 16 H 1.08004 * 120.00335 * 234.68120 * 15 13 12 17 17 C 1.37878 * 120.00054 * 54.67764 * 15 13 12 18 18 N 1.31520 * 119.99983 * 4.87392 * 17 15 13 19 19 Si 1.86799 * 120.00119 * 184.87211 * 17 15 13 20 20 H 1.48503 * 109.46824 * 90.00377 * 19 17 15 21 21 H 1.48506 * 109.46963 * 209.99682 * 19 17 15 22 22 H 1.48492 * 109.47102 * 330.00222 * 19 17 15 23 23 C 1.50702 * 109.47489 * 184.99687 * 13 12 10 24 24 C 1.38228 * 120.00094 * 151.48717 * 23 13 12 25 25 C 1.38237 * 119.99925 * 179.79258 * 24 23 13 26 26 C 1.38237 * 120.00138 * 0.43671 * 25 24 23 27 27 C 1.38232 * 119.99672 * 359.81753 * 26 25 24 28 28 C 1.38237 * 120.00308 * 359.97243 * 27 26 25 29 29 H 1.08004 * 120.00301 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.00111 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46705 * 269.99576 * 3 2 1 32 32 H 1.08993 * 109.47440 * 29.99617 * 3 2 1 33 33 H 1.08998 * 109.47029 * 149.99903 * 3 2 1 34 34 H 1.09002 * 109.46850 * 334.99868 * 4 2 1 35 35 H 1.09001 * 109.46432 * 215.00325 * 4 2 1 36 36 H 1.08994 * 109.47205 * 175.00045 * 7 5 4 37 37 H 1.08997 * 109.46741 * 294.99701 * 7 5 4 38 38 H 0.96701 * 113.99815 * 179.97438 * 8 7 5 39 39 H 0.97003 * 119.99743 * 334.99527 * 9 5 4 40 40 H 1.09003 * 109.47082 * 59.99639 * 12 10 9 41 41 H 1.09003 * 109.46891 * 300.00039 * 12 10 9 42 42 H 0.97002 * 120.00077 * 179.97438 * 18 17 15 43 43 H 1.07996 * 120.00271 * 359.97438 * 24 23 13 44 44 H 1.08005 * 120.00065 * 180.27503 * 25 24 23 45 45 H 1.07997 * 120.00455 * 179.83127 * 26 25 24 46 46 H 1.08001 * 119.99970 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.00535 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6846 -1.4362 6 1 2.9771 -0.8656 -1.9002 7 6 3.2985 -2.9424 -1.4265 8 8 2.6247 -3.9829 -0.7155 9 7 1.2031 -1.9442 -2.1977 10 6 1.1998 -1.8004 -3.5377 11 8 2.2101 -1.4556 -4.1132 12 6 -0.0595 -2.0681 -4.3212 13 6 0.2059 -1.8324 -5.8094 14 1 0.6018 -0.8271 -5.9532 15 6 1.2075 -2.8425 -6.3072 16 1 2.1078 -2.5111 -6.8033 17 6 0.9745 -4.1897 -6.1292 18 7 -0.1639 -4.5976 -5.6121 19 14 2.2758 -5.4358 -6.6226 20 1 3.1770 -5.6928 -5.4705 21 1 1.6181 -6.7038 -7.0289 22 1 3.0666 -4.9015 -7.7602 23 6 -1.0814 -1.9802 -6.5789 24 6 -1.2660 -1.2823 -7.7577 25 6 -2.4451 -1.4212 -8.4657 26 6 -3.4432 -2.2511 -7.9903 27 6 -3.2606 -2.9449 -6.8087 28 6 -2.0798 -2.8094 -6.1029 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 2.2451 1.6197 -1.0278 32 1 1.4744 2.0647 0.5137 33 1 3.0158 1.1748 0.5138 34 1 1.4385 -2.0852 0.4353 35 1 2.9741 -1.1985 0.5901 36 1 3.4840 -3.2637 -2.4513 37 1 4.2474 -2.7234 -0.9369 38 1 3.1197 -4.8123 -0.6696 39 1 0.3949 -2.2198 -1.7374 40 1 -0.8480 -1.3962 -3.9822 41 1 -0.3710 -3.1011 -4.1664 42 1 -0.3279 -5.5454 -5.4872 43 1 -0.4879 -0.6308 -8.1271 44 1 -2.5876 -0.8794 -9.3891 45 1 -4.3655 -2.3575 -8.5420 46 1 -4.0406 -3.5929 -6.4370 47 1 -1.9373 -3.3511 -5.1795 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882899957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:02 Heat of formation + Delta-G solvation = -52.678748 kcal Electronic energy + Delta-G solvation = -27369.804835 eV Core-core repulsion = 23710.600793 eV Total energy + Delta-G solvation = -3659.204042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.30210 -38.21187 -37.08300 -35.90646 -34.23837 -33.35742 -31.07214 -30.18572 -29.73879 -28.15664 -27.34964 -26.03647 -25.66918 -22.77043 -21.54987 -20.96844 -19.88065 -19.23777 -18.42482 -17.24900 -16.54149 -15.91428 -15.70345 -15.33455 -14.99530 -14.75516 -14.34874 -14.19610 -13.85586 -13.81765 -13.55588 -13.44704 -13.01756 -12.70960 -12.55193 -12.21237 -12.11247 -11.83168 -11.65015 -11.57695 -11.43346 -11.30434 -11.08233 -10.89325 -10.81073 -10.69831 -10.36369 -10.13104 -9.91738 -9.86237 -9.25541 -9.13413 -8.94861 -8.71390 -8.38161 -8.31256 -7.77131 -7.40418 -5.93900 -4.03315 2.29108 2.53096 2.61804 3.31043 3.37146 3.42662 3.77018 3.92226 4.45232 4.49156 4.78002 4.94911 5.01135 5.11542 5.28626 5.39865 5.50105 5.53445 5.59805 5.65723 5.77059 5.84118 5.92213 5.93360 5.95660 5.99896 6.04320 6.09629 6.30838 6.43576 6.50755 6.64388 6.68455 6.76081 6.81523 6.90645 7.17378 7.18732 7.21699 7.30507 7.52401 7.58564 7.73503 7.74988 7.96765 8.12960 8.21966 8.36091 8.40661 8.93054 9.30071 9.59315 11.00220 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012019 B = 0.004679 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.153085 B = 5982.331823 C = 7409.681114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.124 4.124 3 C -0.119 4.119 4 C -0.087 4.087 5 C 0.159 3.841 6 H 0.094 0.906 7 C 0.062 3.938 8 O -0.568 6.568 9 N -0.732 5.732 10 C 0.526 3.474 11 O -0.534 6.534 12 C -0.138 4.138 13 C 0.089 3.911 14 H 0.036 0.964 15 C -0.468 4.468 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.888 5.888 19 Si 0.891 3.109 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.276 1.276 23 C -0.026 4.026 24 C -0.132 4.132 25 C -0.142 4.142 26 C -0.154 4.154 27 C -0.143 4.143 28 C -0.068 4.068 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.044 0.956 38 H 0.374 0.626 39 H 0.394 0.606 40 H 0.051 0.949 41 H 0.131 0.869 42 H 0.260 0.740 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.101 0.899 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.170 5.153 11.078 12.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.124 4.124 3 C -0.176 4.176 4 C -0.124 4.124 5 C 0.053 3.947 6 H 0.112 0.888 7 C -0.017 4.017 8 O -0.372 6.372 9 N -0.385 5.385 10 C 0.315 3.685 11 O -0.409 6.409 12 C -0.178 4.178 13 C 0.069 3.931 14 H 0.054 0.946 15 C -0.506 4.506 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.201 1.201 23 C -0.027 4.027 24 C -0.150 4.150 25 C -0.160 4.160 26 C -0.173 4.173 27 C -0.162 4.162 28 C -0.086 4.086 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.220 0.780 39 H 0.228 0.772 40 H 0.069 0.931 41 H 0.149 0.851 42 H 0.070 0.930 43 H 0.123 0.877 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.395 5.710 10.730 12.161 hybrid contribution 0.782 -1.609 -0.321 1.817 sum 1.177 4.101 10.409 11.250 Atomic orbital electron populations 1.23639 0.95192 1.01692 1.02369 1.21684 0.95510 0.95494 0.99686 1.20859 0.99833 0.94639 1.02242 1.20873 1.00737 0.94689 0.96147 1.20761 0.87473 0.95247 0.91248 0.88806 1.22707 0.94062 0.88761 0.96204 1.86439 1.48971 1.24129 1.77710 1.46096 1.12689 1.72284 1.07455 1.21112 0.91659 0.74904 0.80827 1.90592 1.35253 1.46002 1.69050 1.21906 0.92558 1.05695 0.97618 1.17623 0.90089 0.96507 0.88843 0.94551 1.20962 1.03494 0.90105 1.35999 0.92397 1.24875 0.95201 0.98258 0.95613 1.69679 1.22206 1.14979 1.45926 0.86588 0.81932 0.80755 0.78717 1.21082 1.21467 1.20081 1.20349 0.94725 0.92974 0.94642 1.20893 0.96644 1.01290 0.96210 1.20794 0.94982 1.00752 0.99485 1.20758 0.98640 1.00224 0.97653 1.21046 0.98246 1.00522 0.96352 1.21364 0.90796 0.95248 1.01220 0.88753 0.88511 0.91351 0.92104 0.92115 0.90054 0.90612 0.92491 0.93757 0.77972 0.77220 0.93092 0.85139 0.92995 0.87715 0.88140 0.88339 0.88119 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.17 13.47 29.02 0.39 -1.78 16 2 C -0.12 -1.42 5.08 -101.07 -0.51 -1.94 16 3 C -0.12 -1.21 10.03 36.00 0.36 -0.85 16 4 C -0.09 -1.02 4.64 -27.89 -0.13 -1.15 16 5 C 0.16 2.33 2.36 -67.93 -0.16 2.17 16 6 H 0.09 1.49 7.58 -51.93 -0.39 1.10 16 7 C 0.06 0.89 6.85 37.16 0.25 1.15 16 8 O -0.57 -7.78 12.83 -35.23 -0.45 -8.23 16 9 N -0.73 -12.31 4.57 -53.81 -0.25 -12.56 16 10 C 0.53 11.13 7.54 -10.99 -0.08 11.05 16 11 O -0.53 -13.04 14.65 5.56 0.08 -12.96 16 12 C -0.14 -2.99 4.07 -27.89 -0.11 -3.10 16 13 C 0.09 2.15 1.97 -92.92 -0.18 1.96 16 14 H 0.04 0.90 7.91 -51.93 -0.41 0.49 16 15 C -0.47 -12.61 7.27 -34.44 -0.25 -12.86 16 16 H 0.06 1.65 7.82 -52.48 -0.41 1.24 16 17 C 0.06 1.59 5.12 -17.82 -0.09 1.50 16 18 N -0.89 -22.86 7.99 55.43 0.44 -22.41 16 19 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C -0.03 -0.61 4.69 -104.62 -0.49 -1.10 16 24 C -0.13 -2.86 9.71 -39.59 -0.38 -3.25 16 25 C -0.14 -2.77 10.05 -39.58 -0.40 -3.17 16 26 C -0.15 -2.95 10.05 -39.58 -0.40 -3.35 16 27 C -0.14 -2.89 10.05 -39.58 -0.40 -3.29 16 28 C -0.07 -1.51 7.45 -39.58 -0.30 -1.80 16 29 H 0.09 0.98 8.04 -52.48 -0.42 0.56 16 30 H 0.10 1.06 7.83 -52.49 -0.41 0.65 16 31 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 32 H 0.06 0.55 8.06 -51.93 -0.42 0.13 16 33 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 34 H 0.08 0.99 7.57 -51.93 -0.39 0.60 16 35 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.37 3.71 9.12 45.56 0.42 4.12 16 39 H 0.39 6.05 8.22 -40.82 -0.34 5.72 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.13 3.03 4.71 -51.93 -0.24 2.78 16 42 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 43 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 44 H 0.10 1.68 8.06 -52.48 -0.42 1.25 16 45 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 46 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 47 H 0.14 3.17 5.18 -52.49 -0.27 2.90 16 LS Contribution 382.60 15.07 5.77 5.77 Total: -1.00 -29.95 382.60 -8.96 -38.92 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -6.65 Total: 14.70 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -2.88 Total: -19.80 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.20 Total: -34.98 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.37 Total: -21.19 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.95 -8.96 -38.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882899957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.762 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds