Wall clock time and date at job start Tue Mar 31 2020 11:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 119.99756 * 2 1 4 4 C 1.50701 * 119.99921 * 179.97438 * 2 1 3 5 5 C 1.52992 * 109.47402 * 95.00333 * 4 2 1 6 6 H 1.09006 * 109.47364 * 54.99382 * 5 4 2 7 7 C 1.52999 * 109.47457 * 174.99813 * 5 4 2 8 8 O 1.42900 * 109.46956 * 54.99580 * 7 5 4 9 9 N 1.46505 * 109.46995 * 295.00036 * 5 4 2 10 10 C 1.34770 * 120.00096 * 155.00131 * 9 5 4 11 11 O 1.21282 * 120.00471 * 359.97438 * 10 9 5 12 12 C 1.50700 * 120.00252 * 179.97438 * 10 9 5 13 13 C 1.52994 * 109.47505 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.47674 * 305.00018 * 13 12 10 15 15 C 1.50703 * 109.47113 * 64.99927 * 13 12 10 16 16 H 1.08004 * 120.00335 * 234.68120 * 15 13 12 17 17 C 1.37878 * 120.00054 * 54.67764 * 15 13 12 18 18 N 1.31520 * 119.99983 * 4.87392 * 17 15 13 19 19 Si 1.86799 * 120.00119 * 184.87211 * 17 15 13 20 20 H 1.48503 * 109.46824 * 90.00377 * 19 17 15 21 21 H 1.48506 * 109.46963 * 209.99682 * 19 17 15 22 22 H 1.48492 * 109.47102 * 330.00222 * 19 17 15 23 23 C 1.50702 * 109.47489 * 184.99687 * 13 12 10 24 24 C 1.38228 * 120.00094 * 151.48717 * 23 13 12 25 25 C 1.38237 * 119.99925 * 179.79258 * 24 23 13 26 26 C 1.38237 * 120.00138 * 0.43671 * 25 24 23 27 27 C 1.38232 * 119.99672 * 359.81753 * 26 25 24 28 28 C 1.38237 * 120.00308 * 359.97243 * 27 26 25 29 29 H 1.08004 * 120.00301 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.00111 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46705 * 269.99576 * 3 2 1 32 32 H 1.08993 * 109.47440 * 29.99617 * 3 2 1 33 33 H 1.08998 * 109.47029 * 149.99903 * 3 2 1 34 34 H 1.09002 * 109.46850 * 334.99868 * 4 2 1 35 35 H 1.09001 * 109.46432 * 215.00325 * 4 2 1 36 36 H 1.08994 * 109.47205 * 175.00045 * 7 5 4 37 37 H 1.08997 * 109.46741 * 294.99701 * 7 5 4 38 38 H 0.96701 * 113.99815 * 179.97438 * 8 7 5 39 39 H 0.97003 * 119.99743 * 334.99527 * 9 5 4 40 40 H 1.09003 * 109.47082 * 59.99639 * 12 10 9 41 41 H 1.09003 * 109.46891 * 300.00039 * 12 10 9 42 42 H 0.97002 * 120.00077 * 179.97438 * 18 17 15 43 43 H 1.07996 * 120.00271 * 359.97438 * 24 23 13 44 44 H 1.08005 * 120.00065 * 180.27503 * 25 24 23 45 45 H 1.07997 * 120.00455 * 179.83127 * 26 25 24 46 46 H 1.08001 * 119.99970 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.00535 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6846 -1.4362 6 1 2.9771 -0.8656 -1.9002 7 6 3.2985 -2.9424 -1.4265 8 8 2.6247 -3.9829 -0.7155 9 7 1.2031 -1.9442 -2.1977 10 6 1.1998 -1.8004 -3.5377 11 8 2.2101 -1.4556 -4.1132 12 6 -0.0595 -2.0681 -4.3212 13 6 0.2059 -1.8324 -5.8094 14 1 0.6018 -0.8271 -5.9532 15 6 1.2075 -2.8425 -6.3072 16 1 2.1078 -2.5111 -6.8033 17 6 0.9745 -4.1897 -6.1292 18 7 -0.1639 -4.5976 -5.6121 19 14 2.2758 -5.4358 -6.6226 20 1 3.1770 -5.6928 -5.4705 21 1 1.6181 -6.7038 -7.0289 22 1 3.0666 -4.9015 -7.7602 23 6 -1.0814 -1.9802 -6.5789 24 6 -1.2660 -1.2823 -7.7577 25 6 -2.4451 -1.4212 -8.4657 26 6 -3.4432 -2.2511 -7.9903 27 6 -3.2606 -2.9449 -6.8087 28 6 -2.0798 -2.8094 -6.1029 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 2.2451 1.6197 -1.0278 32 1 1.4744 2.0647 0.5137 33 1 3.0158 1.1748 0.5138 34 1 1.4385 -2.0852 0.4353 35 1 2.9741 -1.1985 0.5901 36 1 3.4840 -3.2637 -2.4513 37 1 4.2474 -2.7234 -0.9369 38 1 3.1197 -4.8123 -0.6696 39 1 0.3949 -2.2198 -1.7374 40 1 -0.8480 -1.3962 -3.9822 41 1 -0.3710 -3.1011 -4.1664 42 1 -0.3279 -5.5454 -5.4872 43 1 -0.4879 -0.6308 -8.1271 44 1 -2.5876 -0.8794 -9.3891 45 1 -4.3655 -2.3575 -8.5420 46 1 -4.0406 -3.5929 -6.4370 47 1 -1.9373 -3.3511 -5.1795 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882899957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:01 Heat of formation + Delta-G solvation = -70.659200 kcal Electronic energy + Delta-G solvation = -27370.584526 eV Core-core repulsion = 23710.600793 eV Total energy + Delta-G solvation = -3659.983733 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.84183 -39.77578 -38.43814 -36.91557 -36.02509 -34.72750 -32.97049 -31.58711 -31.28426 -29.77201 -28.18991 -27.61988 -27.01199 -24.52775 -23.11887 -22.36468 -21.41707 -20.87042 -19.46190 -18.40866 -18.30117 -17.68080 -17.05621 -16.88517 -16.77078 -16.09932 -15.58406 -15.48395 -15.41493 -15.13664 -15.01425 -14.68907 -14.42957 -14.34115 -13.78811 -13.78219 -13.44064 -13.32115 -13.12168 -12.99230 -12.87184 -12.76950 -12.68329 -12.47892 -12.21911 -12.12726 -11.86335 -11.70248 -11.67805 -11.06644 -11.05047 -10.98521 -10.58192 -10.23423 -9.88573 -9.77568 -9.39374 -9.10868 -7.93221 -6.09039 0.89551 1.00955 1.34486 1.37019 1.38616 1.45532 2.09371 2.44449 2.51662 3.20834 3.38458 3.41039 3.80517 4.02146 4.07446 4.31249 4.34318 4.36925 4.41661 4.42742 4.52854 4.56607 4.70083 4.72150 4.78381 4.82325 4.84656 4.91025 4.93484 5.09074 5.09779 5.13725 5.15433 5.19985 5.41016 5.54836 5.63656 5.68599 5.74984 5.82451 5.91545 5.95525 6.04013 6.10472 6.37818 6.43717 6.58859 6.81681 6.83090 6.89313 7.52715 7.67714 8.95767 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012019 B = 0.004679 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.153085 B = 5982.331823 C = 7409.681114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.135 4.135 3 C -0.118 4.118 4 C -0.074 4.074 5 C 0.154 3.846 6 H 0.080 0.920 7 C 0.068 3.932 8 O -0.575 6.575 9 N -0.715 5.715 10 C 0.523 3.477 11 O -0.574 6.574 12 C -0.128 4.128 13 C 0.090 3.910 14 H 0.013 0.987 15 C -0.488 4.488 16 H 0.027 0.973 17 C 0.035 3.965 18 N -0.884 5.884 19 Si 0.929 3.071 20 H -0.285 1.285 21 H -0.279 1.279 22 H -0.285 1.285 23 C -0.050 4.050 24 C -0.152 4.152 25 C -0.140 4.140 26 C -0.149 4.149 27 C -0.147 4.147 28 C -0.081 4.081 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.016 0.984 37 H 0.077 0.923 38 H 0.391 0.609 39 H 0.403 0.597 40 H 0.069 0.931 41 H 0.120 0.880 42 H 0.260 0.740 43 H 0.102 0.898 44 H 0.132 0.868 45 H 0.136 0.864 46 H 0.126 0.874 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.307 4.810 11.956 12.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.135 4.135 3 C -0.175 4.175 4 C -0.112 4.112 5 C 0.049 3.951 6 H 0.098 0.902 7 C -0.011 4.011 8 O -0.382 6.382 9 N -0.368 5.368 10 C 0.312 3.688 11 O -0.453 6.453 12 C -0.168 4.168 13 C 0.070 3.930 14 H 0.032 0.968 15 C -0.526 4.526 16 H 0.045 0.955 17 C -0.165 4.165 18 N -0.523 5.523 19 Si 0.758 3.242 20 H -0.212 1.212 21 H -0.204 1.204 22 H -0.210 1.210 23 C -0.051 4.051 24 C -0.170 4.170 25 C -0.158 4.158 26 C -0.166 4.166 27 C -0.165 4.165 28 C -0.099 4.099 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.034 0.966 37 H 0.095 0.905 38 H 0.240 0.760 39 H 0.238 0.762 40 H 0.088 0.912 41 H 0.137 0.863 42 H 0.070 0.930 43 H 0.120 0.880 44 H 0.150 0.850 45 H 0.154 0.846 46 H 0.144 0.856 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.104 5.345 11.653 12.868 hybrid contribution 1.193 -1.479 -0.593 1.991 sum 0.089 3.865 11.061 11.717 Atomic orbital electron populations 1.23804 0.95351 1.02224 1.01886 1.21836 0.95760 0.95912 1.00022 1.20872 1.00648 0.94276 1.01717 1.20785 1.01771 0.94775 0.93853 1.20941 0.86353 0.95196 0.92646 0.90235 1.22559 0.95441 0.88681 0.94458 1.86392 1.49700 1.24985 1.77162 1.45917 1.14006 1.70685 1.06190 1.21050 0.90872 0.74743 0.82152 1.90571 1.36350 1.48152 1.70208 1.21727 0.93425 1.05257 0.96399 1.17513 0.90417 0.94442 0.90580 0.96818 1.20913 1.03400 0.91368 1.36927 0.95510 1.25224 0.96511 0.98878 0.95873 1.69774 1.22115 1.14990 1.45442 0.86007 0.80549 0.79671 0.78022 1.21168 1.20434 1.21026 1.20312 0.94676 0.94624 0.95495 1.21071 0.97929 1.01696 0.96318 1.21156 0.93916 1.00537 1.00155 1.21193 0.99701 0.98658 0.97093 1.21362 0.97914 1.00698 0.96545 1.21308 0.91709 0.95496 1.01412 0.87971 0.88379 0.92723 0.90926 0.90755 0.90065 0.88469 0.96606 0.90491 0.75982 0.76165 0.91231 0.86259 0.92965 0.87957 0.84993 0.84595 0.85623 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.16 13.47 67.78 0.91 -3.25 16 2 C -0.14 -2.92 5.08 -16.49 -0.08 -3.00 16 3 C -0.12 -2.24 10.03 71.24 0.71 -1.52 16 4 C -0.07 -1.62 4.64 29.85 0.14 -1.48 16 5 C 0.15 4.47 2.36 44.99 0.11 4.57 16 6 H 0.08 2.57 7.58 -2.38 -0.02 2.56 16 7 C 0.07 1.92 6.85 71.98 0.49 2.42 16 8 O -0.58 -14.97 12.83 -148.98 -1.91 -16.88 16 9 N -0.72 -24.28 4.57 -442.54 -2.02 -26.30 16 10 C 0.52 22.90 7.54 87.66 0.66 23.56 16 11 O -0.57 -29.52 14.65 -3.04 -0.04 -29.56 16 12 C -0.13 -5.72 4.07 29.85 0.12 -5.60 16 13 C 0.09 4.54 1.97 -12.29 -0.02 4.51 16 14 H 0.01 0.72 7.91 -2.39 -0.02 0.70 16 15 C -0.49 -27.51 7.27 25.60 0.19 -27.32 16 16 H 0.03 1.62 7.82 -2.91 -0.02 1.60 16 17 C 0.03 1.86 5.12 84.65 0.43 2.30 16 18 N -0.88 -45.80 7.99 21.45 0.17 -45.62 16 19 Si 0.93 44.90 29.54 68.60 2.03 46.93 16 20 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.28 -14.07 7.11 99.48 0.71 -13.37 16 23 C -0.05 -2.38 4.69 -19.87 -0.09 -2.47 16 24 C -0.15 -6.59 9.71 22.27 0.22 -6.37 16 25 C -0.14 -5.13 10.05 22.27 0.22 -4.90 16 26 C -0.15 -5.16 10.05 22.27 0.22 -4.94 16 27 C -0.15 -5.58 10.05 22.27 0.22 -5.35 16 28 C -0.08 -3.56 7.45 22.27 0.17 -3.39 16 29 H 0.10 1.98 8.04 -2.91 -0.02 1.96 16 30 H 0.10 2.02 7.83 -2.91 -0.02 2.00 16 31 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.07 1.18 8.06 -2.39 -0.02 1.16 16 33 H 0.07 1.18 8.08 -2.39 -0.02 1.16 16 34 H 0.08 1.81 7.57 -2.39 -0.02 1.79 16 35 H 0.10 1.73 8.10 -2.39 -0.02 1.71 16 36 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.39 7.15 9.12 -74.06 -0.68 6.48 16 39 H 0.40 12.22 8.22 -92.71 -0.76 11.45 16 40 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.12 5.65 4.71 -2.39 -0.01 5.64 16 42 H 0.26 13.09 8.31 -92.71 -0.77 12.32 16 43 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 44 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 45 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 46 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 47 H 0.13 5.86 5.18 -2.91 -0.02 5.84 16 Total: -1.00 -66.21 382.60 2.37 -63.84 By element: Atomic # 1 Polarization: 40.30 SS G_CDS: -0.47 Total: 39.84 kcal Atomic # 6 Polarization: -36.85 SS G_CDS: 4.62 Total: -32.23 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -1.85 Total: -71.93 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -1.96 Total: -46.44 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -66.21 2.37 -63.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882899957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.820 kcal (2) G-P(sol) polarization free energy of solvation -66.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds