Wall clock time and date at job start Tue Mar 31 2020 11:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50709 * 119.99951 * 2 1 4 4 C 1.50696 * 120.00204 * 179.97438 * 2 1 3 5 5 C 1.53006 * 109.46820 * 95.00178 * 4 2 1 6 6 H 1.08993 * 109.47258 * 55.00658 * 5 4 2 7 7 C 1.53002 * 109.46594 * 175.00309 * 5 4 2 8 8 O 1.42900 * 109.47467 * 55.00116 * 7 5 4 9 9 N 1.46494 * 109.46974 * 294.99952 * 5 4 2 10 10 C 1.34780 * 119.99915 * 155.00724 * 9 5 4 11 11 O 1.21284 * 119.99631 * 359.97438 * 10 9 5 12 12 C 1.50698 * 120.00342 * 180.02562 * 10 9 5 13 13 C 1.52994 * 109.47404 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.46845 * 55.00037 * 13 12 10 15 15 C 1.50695 * 109.47338 * 294.99823 * 13 12 10 16 16 H 1.07999 * 119.99680 * 325.84831 * 15 13 12 17 17 C 1.37878 * 120.00406 * 145.84711 * 15 13 12 18 18 N 1.31516 * 119.99645 * 6.11520 * 17 15 13 19 19 Si 1.86797 * 120.00147 * 186.12000 * 17 15 13 20 20 H 1.48501 * 109.47353 * 59.99867 * 19 17 15 21 21 H 1.48501 * 109.47190 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47429 * 299.99678 * 19 17 15 23 23 C 1.50702 * 109.47283 * 174.99520 * 13 12 10 24 24 C 1.38238 * 119.99617 * 63.46695 * 23 13 12 25 25 C 1.38235 * 119.99648 * 179.79206 * 24 23 13 26 26 C 1.38238 * 120.00395 * 0.43394 * 25 24 23 27 27 C 1.38241 * 119.99323 * 359.81511 * 26 25 24 28 28 C 1.38230 * 120.00330 * 359.97438 * 27 26 25 29 29 H 1.08003 * 120.00031 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00038 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.46792 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46783 * 299.99778 * 3 2 1 33 33 H 1.08999 * 109.47142 * 59.99650 * 3 2 1 34 34 H 1.08997 * 109.46744 * 335.00459 * 4 2 1 35 35 H 1.09000 * 109.47453 * 215.00125 * 4 2 1 36 36 H 1.09006 * 109.46782 * 174.99956 * 7 5 4 37 37 H 1.09003 * 109.47206 * 294.99533 * 7 5 4 38 38 H 0.96703 * 113.99953 * 179.97438 * 8 7 5 39 39 H 0.97000 * 120.00321 * 334.99563 * 9 5 4 40 40 H 1.09009 * 109.46625 * 299.99658 * 12 10 9 41 41 H 1.08998 * 109.47404 * 59.99218 * 12 10 9 42 42 H 0.97003 * 119.99566 * 179.97438 * 18 17 15 43 43 H 1.07996 * 119.99976 * 359.97438 * 24 23 13 44 44 H 1.07996 * 119.99870 * 180.27722 * 25 24 23 45 45 H 1.07989 * 120.00367 * 179.84164 * 26 25 24 46 46 H 1.08006 * 119.99590 * 179.97438 * 27 26 25 47 47 H 1.08003 * 119.99990 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3050 0.0006 5 6 2.4274 -1.6844 -1.4363 6 1 2.9771 -0.8655 -1.9002 7 6 3.2984 -2.9423 -1.4266 8 8 2.6246 -3.9828 -0.7158 9 7 1.2032 -1.9441 -2.1978 10 6 1.1998 -1.8003 -3.5379 11 8 2.2102 -1.4554 -4.1132 12 6 -0.0597 -2.0668 -4.3212 13 6 0.2057 -1.8313 -5.8094 14 1 1.0525 -2.4393 -6.1280 15 6 0.5177 -0.3752 -6.0398 16 1 0.0333 0.3821 -5.4412 17 6 1.4216 -0.0096 -7.0147 18 7 1.9204 -0.9191 -7.8232 19 14 1.9376 1.7774 -7.1872 20 1 2.5688 2.2346 -5.9232 21 1 2.9113 1.9062 -8.3010 22 1 0.7434 2.6120 -7.4742 23 6 -1.0156 -2.2153 -6.6045 24 6 -2.2012 -1.5273 -6.4256 25 6 -3.3203 -1.8767 -7.1580 26 6 -3.2563 -2.9199 -8.0627 27 6 -2.0720 -3.6112 -8.2378 28 6 -0.9518 -3.2590 -7.5086 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 3.1351 1.1060 -0.0005 32 1 1.8002 1.8767 -0.8901 33 1 1.8002 1.8768 0.8899 34 1 1.4386 -2.0852 0.4352 35 1 2.9742 -1.1986 0.5900 36 1 3.4840 -3.2636 -2.4515 37 1 4.2474 -2.7233 -0.9370 38 1 3.1197 -4.8122 -0.6699 39 1 0.3950 -2.2197 -1.7375 40 1 -0.3721 -3.0997 -4.1664 41 1 -0.8477 -1.3943 -3.9821 42 1 2.5561 -0.6618 -8.5093 43 1 -2.2522 -0.7150 -5.7158 44 1 -4.2453 -1.3363 -7.0215 45 1 -4.1312 -3.1946 -8.6330 46 1 -2.0221 -4.4266 -8.9444 47 1 -0.0267 -3.7994 -7.6451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882899958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:05 Heat of formation + Delta-G solvation = -58.725883 kcal Electronic energy + Delta-G solvation = -27016.471267 eV Core-core repulsion = 23357.005001 eV Total energy + Delta-G solvation = -3659.466265 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.38701 -38.31802 -37.19390 -35.98278 -34.03351 -33.39170 -31.45077 -30.23935 -29.96112 -28.45364 -27.34096 -26.07524 -25.43119 -22.89118 -21.64105 -21.17740 -19.93937 -19.27490 -18.44518 -17.37214 -16.54753 -16.17578 -15.84306 -15.56213 -14.94723 -14.59498 -14.33413 -14.25986 -14.06988 -13.86288 -13.73087 -13.54457 -13.07143 -12.74768 -12.55540 -12.36157 -12.06970 -11.98362 -11.81365 -11.70741 -11.54535 -11.54027 -11.12514 -10.83032 -10.75347 -10.62467 -10.55797 -10.21923 -10.02254 -10.00062 -9.39883 -9.01583 -8.94444 -8.77095 -8.44899 -8.27124 -8.00401 -7.56024 -5.89250 -3.88083 2.28802 2.33010 2.39049 3.40863 3.44345 3.48480 3.63448 3.78507 4.35874 4.55385 4.75668 4.79570 4.94427 5.04932 5.35936 5.41801 5.45570 5.47865 5.60769 5.66221 5.69383 5.70640 5.76979 5.85361 5.88363 5.90751 5.99305 6.01339 6.17249 6.22653 6.28568 6.34888 6.45336 6.59083 6.67970 6.86577 6.90086 6.96090 7.07884 7.09713 7.34934 7.49366 7.57915 7.60856 7.90138 7.99512 8.09889 8.24064 8.44010 9.11262 9.20077 9.73333 11.21015 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010841 B = 0.004377 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.170960 B = 6395.235846 C = 7280.946939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.122 4.122 3 C -0.120 4.120 4 C -0.086 4.086 5 C 0.157 3.843 6 H 0.097 0.903 7 C 0.063 3.937 8 O -0.569 6.569 9 N -0.734 5.734 10 C 0.515 3.485 11 O -0.501 6.501 12 C -0.122 4.122 13 C 0.081 3.919 14 H 0.071 0.929 15 C -0.490 4.490 16 H 0.049 0.951 17 C 0.079 3.921 18 N -0.882 5.882 19 Si 0.885 3.115 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.280 1.280 23 C -0.020 4.020 24 C -0.115 4.115 25 C -0.132 4.132 26 C -0.156 4.156 27 C -0.128 4.128 28 C -0.119 4.119 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.374 0.626 39 H 0.393 0.607 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.259 0.741 43 H 0.112 0.888 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.269 -4.100 14.139 14.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.122 4.122 3 C -0.177 4.177 4 C -0.124 4.124 5 C 0.051 3.949 6 H 0.115 0.885 7 C -0.016 4.016 8 O -0.374 6.374 9 N -0.389 5.389 10 C 0.301 3.699 11 O -0.373 6.373 12 C -0.163 4.163 13 C 0.062 3.938 14 H 0.089 0.911 15 C -0.527 4.527 16 H 0.067 0.933 17 C -0.124 4.124 18 N -0.519 5.519 19 Si 0.714 3.286 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.206 1.206 23 C -0.021 4.021 24 C -0.133 4.133 25 C -0.150 4.150 26 C -0.175 4.175 27 C -0.146 4.146 28 C -0.137 4.137 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.220 0.780 39 H 0.226 0.774 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.068 0.932 43 H 0.131 0.869 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.816 -3.375 13.574 14.105 hybrid contribution 0.365 0.568 -0.201 0.704 sum -1.451 -2.807 13.374 13.742 Atomic orbital electron populations 1.23586 0.95230 1.01623 1.02572 1.21683 0.95493 0.95495 0.99512 1.20855 0.99964 0.94928 1.01968 1.20879 1.00763 0.94725 0.96007 1.20791 0.87346 0.95342 0.91371 0.88479 1.22716 0.94288 0.88648 0.95986 1.86448 1.48928 1.24169 1.77882 1.46116 1.12814 1.72563 1.07370 1.20874 0.91424 0.76504 0.81056 1.90741 1.34475 1.43256 1.68834 1.21779 0.94714 1.00382 0.99375 1.17815 0.91452 0.98556 0.85956 0.91101 1.20635 1.23838 0.90148 1.18072 0.93275 1.24794 0.95535 0.96680 0.95421 1.69908 1.30456 1.32969 1.18611 0.86775 0.78337 0.86031 0.77471 1.20327 1.21496 1.20585 1.20750 0.95235 0.90674 0.95397 1.20944 0.92629 0.99544 1.00214 1.20969 0.98146 0.97985 0.97887 1.20787 0.97489 0.98413 1.00767 1.20978 0.93675 1.00050 0.99938 1.21081 0.97401 0.97948 0.97288 0.88725 0.88625 0.92123 0.91377 0.91866 0.90143 0.90527 0.92635 0.93476 0.77977 0.77395 0.91815 0.90664 0.93171 0.86947 0.87716 0.87846 0.87688 0.86895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.20 13.52 29.01 0.39 -1.80 16 2 C -0.12 -1.42 5.08 -101.06 -0.51 -1.94 16 3 C -0.12 -1.33 10.05 36.01 0.36 -0.96 16 4 C -0.09 -0.97 4.56 -27.88 -0.13 -1.09 16 5 C 0.16 2.19 2.36 -67.93 -0.16 2.03 16 6 H 0.10 1.57 7.58 -51.93 -0.39 1.18 16 7 C 0.06 0.79 6.85 37.16 0.25 1.04 16 8 O -0.57 -6.43 12.83 -35.23 -0.45 -6.89 16 9 N -0.73 -11.33 4.57 -53.81 -0.25 -11.57 16 10 C 0.51 10.33 7.54 -10.99 -0.08 10.25 16 11 O -0.50 -12.41 14.65 5.55 0.08 -12.33 16 12 C -0.12 -2.42 4.95 -27.89 -0.14 -2.55 16 13 C 0.08 1.96 1.67 -92.93 -0.16 1.81 16 14 H 0.07 1.97 6.98 -51.93 -0.36 1.60 16 15 C -0.49 -13.26 6.37 -34.44 -0.22 -13.48 16 16 H 0.05 1.33 7.82 -52.49 -0.41 0.92 16 17 C 0.08 2.24 5.45 -17.82 -0.10 2.15 16 18 N -0.88 -26.13 12.87 55.43 0.71 -25.42 16 19 Si 0.89 22.46 29.54 -169.99 -5.02 17.44 16 20 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 24 C -0.12 -2.37 8.86 -39.58 -0.35 -2.72 16 25 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 26 C -0.16 -2.78 10.05 -39.58 -0.40 -3.17 16 27 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 28 C -0.12 -2.56 9.67 -39.59 -0.38 -2.94 16 29 H 0.09 1.03 8.05 -52.48 -0.42 0.61 16 30 H 0.10 1.00 7.82 -52.49 -0.41 0.59 16 31 H 0.06 0.62 8.00 -51.93 -0.42 0.21 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.90 7.57 -51.93 -0.39 0.51 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.37 2.70 9.12 45.56 0.42 3.11 16 39 H 0.39 5.26 8.22 -40.82 -0.34 4.93 16 40 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 41 H 0.07 1.39 7.77 -51.93 -0.40 0.99 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.11 2.24 7.76 -52.49 -0.41 1.83 16 44 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 45 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 46 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 47 H 0.11 2.45 7.95 -52.48 -0.42 2.03 16 LS Contribution 393.59 15.07 5.93 5.93 Total: -1.00 -32.87 393.59 -8.80 -41.67 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -6.90 Total: 11.13 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -2.91 Total: -19.96 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.47 Total: -36.99 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.37 Total: -19.22 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.87 -8.80 -41.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882899958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.055 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds