Wall clock time and date at job start Tue Mar 31 2020 11:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50709 * 119.99951 * 2 1 4 4 C 1.50696 * 120.00204 * 179.97438 * 2 1 3 5 5 C 1.53006 * 109.46820 * 95.00178 * 4 2 1 6 6 H 1.08993 * 109.47258 * 55.00658 * 5 4 2 7 7 C 1.53002 * 109.46594 * 175.00309 * 5 4 2 8 8 O 1.42900 * 109.47467 * 55.00116 * 7 5 4 9 9 N 1.46494 * 109.46974 * 294.99952 * 5 4 2 10 10 C 1.34780 * 119.99915 * 155.00724 * 9 5 4 11 11 O 1.21284 * 119.99631 * 359.97438 * 10 9 5 12 12 C 1.50698 * 120.00342 * 180.02562 * 10 9 5 13 13 C 1.52994 * 109.47404 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.46845 * 55.00037 * 13 12 10 15 15 C 1.50695 * 109.47338 * 294.99823 * 13 12 10 16 16 H 1.07999 * 119.99680 * 325.84831 * 15 13 12 17 17 C 1.37878 * 120.00406 * 145.84711 * 15 13 12 18 18 N 1.31516 * 119.99645 * 6.11520 * 17 15 13 19 19 Si 1.86797 * 120.00147 * 186.12000 * 17 15 13 20 20 H 1.48501 * 109.47353 * 59.99867 * 19 17 15 21 21 H 1.48501 * 109.47190 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47429 * 299.99678 * 19 17 15 23 23 C 1.50702 * 109.47283 * 174.99520 * 13 12 10 24 24 C 1.38238 * 119.99617 * 63.46695 * 23 13 12 25 25 C 1.38235 * 119.99648 * 179.79206 * 24 23 13 26 26 C 1.38238 * 120.00395 * 0.43394 * 25 24 23 27 27 C 1.38241 * 119.99323 * 359.81511 * 26 25 24 28 28 C 1.38230 * 120.00330 * 359.97438 * 27 26 25 29 29 H 1.08003 * 120.00031 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00038 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.46792 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46783 * 299.99778 * 3 2 1 33 33 H 1.08999 * 109.47142 * 59.99650 * 3 2 1 34 34 H 1.08997 * 109.46744 * 335.00459 * 4 2 1 35 35 H 1.09000 * 109.47453 * 215.00125 * 4 2 1 36 36 H 1.09006 * 109.46782 * 174.99956 * 7 5 4 37 37 H 1.09003 * 109.47206 * 294.99533 * 7 5 4 38 38 H 0.96703 * 113.99953 * 179.97438 * 8 7 5 39 39 H 0.97000 * 120.00321 * 334.99563 * 9 5 4 40 40 H 1.09009 * 109.46625 * 299.99658 * 12 10 9 41 41 H 1.08998 * 109.47404 * 59.99218 * 12 10 9 42 42 H 0.97003 * 119.99566 * 179.97438 * 18 17 15 43 43 H 1.07996 * 119.99976 * 359.97438 * 24 23 13 44 44 H 1.07996 * 119.99870 * 180.27722 * 25 24 23 45 45 H 1.07989 * 120.00367 * 179.84164 * 26 25 24 46 46 H 1.08006 * 119.99590 * 179.97438 * 27 26 25 47 47 H 1.08003 * 119.99990 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3050 0.0006 5 6 2.4274 -1.6844 -1.4363 6 1 2.9771 -0.8655 -1.9002 7 6 3.2984 -2.9423 -1.4266 8 8 2.6246 -3.9828 -0.7158 9 7 1.2032 -1.9441 -2.1978 10 6 1.1998 -1.8003 -3.5379 11 8 2.2102 -1.4554 -4.1132 12 6 -0.0597 -2.0668 -4.3212 13 6 0.2057 -1.8313 -5.8094 14 1 1.0525 -2.4393 -6.1280 15 6 0.5177 -0.3752 -6.0398 16 1 0.0333 0.3821 -5.4412 17 6 1.4216 -0.0096 -7.0147 18 7 1.9204 -0.9191 -7.8232 19 14 1.9376 1.7774 -7.1872 20 1 2.5688 2.2346 -5.9232 21 1 2.9113 1.9062 -8.3010 22 1 0.7434 2.6120 -7.4742 23 6 -1.0156 -2.2153 -6.6045 24 6 -2.2012 -1.5273 -6.4256 25 6 -3.3203 -1.8767 -7.1580 26 6 -3.2563 -2.9199 -8.0627 27 6 -2.0720 -3.6112 -8.2378 28 6 -0.9518 -3.2590 -7.5086 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 3.1351 1.1060 -0.0005 32 1 1.8002 1.8767 -0.8901 33 1 1.8002 1.8768 0.8899 34 1 1.4386 -2.0852 0.4352 35 1 2.9742 -1.1986 0.5900 36 1 3.4840 -3.2636 -2.4515 37 1 4.2474 -2.7233 -0.9370 38 1 3.1197 -4.8122 -0.6699 39 1 0.3950 -2.2197 -1.7375 40 1 -0.3721 -3.0997 -4.1664 41 1 -0.8477 -1.3943 -3.9821 42 1 2.5561 -0.6618 -8.5093 43 1 -2.2522 -0.7150 -5.7158 44 1 -4.2453 -1.3363 -7.0215 45 1 -4.1312 -3.1946 -8.6330 46 1 -2.0221 -4.4266 -8.9444 47 1 -0.0267 -3.7994 -7.6451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882899958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:05 Heat of formation + Delta-G solvation = -80.090150 kcal Electronic energy + Delta-G solvation = -27017.397691 eV Core-core repulsion = 23357.005001 eV Total energy + Delta-G solvation = -3660.392690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.85059 -39.81924 -38.45783 -36.90324 -35.79115 -34.74198 -33.40988 -31.55227 -31.46117 -29.95524 -28.22665 -27.40899 -26.99832 -24.61785 -23.16248 -22.46226 -21.38869 -20.88362 -19.46111 -18.48534 -18.37587 -17.79608 -17.12578 -16.96544 -16.44122 -16.20442 -15.72108 -15.54560 -15.36357 -15.16705 -15.11361 -14.70472 -14.39957 -14.24622 -13.96272 -13.84030 -13.59857 -13.48244 -13.22867 -13.03014 -12.82463 -12.80201 -12.55925 -12.52233 -12.45467 -12.11426 -11.82236 -11.70686 -11.67429 -11.30172 -10.99050 -10.95139 -10.58626 -10.30089 -9.89985 -9.77410 -9.53436 -9.17773 -8.03291 -6.05208 0.78695 0.85283 1.34577 1.37652 1.39104 1.43446 2.04435 2.44945 2.46441 3.19650 3.37103 3.42285 3.80031 4.00906 4.06153 4.25587 4.26949 4.33753 4.36923 4.42200 4.44693 4.55985 4.56676 4.65820 4.69806 4.76078 4.78494 4.79693 4.91577 4.94289 5.00836 5.08320 5.11217 5.18511 5.28374 5.38793 5.54032 5.64671 5.71958 5.79450 5.81717 5.84479 5.96640 6.02352 6.18827 6.43321 6.47836 6.85267 6.87912 7.01991 7.57087 7.67302 9.06368 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010841 B = 0.004377 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.170960 B = 6395.235846 C = 7280.946939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.137 4.137 3 C -0.121 4.121 4 C -0.073 4.073 5 C 0.151 3.849 6 H 0.071 0.929 7 C 0.072 3.928 8 O -0.574 6.574 9 N -0.713 5.713 10 C 0.513 3.487 11 O -0.558 6.558 12 C -0.116 4.116 13 C 0.085 3.915 14 H 0.023 0.977 15 C -0.483 4.483 16 H 0.045 0.955 17 C 0.024 3.976 18 N -0.917 5.917 19 Si 0.933 3.067 20 H -0.282 1.282 21 H -0.289 1.289 22 H -0.268 1.268 23 C -0.045 4.045 24 C -0.128 4.128 25 C -0.126 4.126 26 C -0.148 4.148 27 C -0.128 4.128 28 C -0.144 4.144 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.023 0.977 37 H 0.074 0.926 38 H 0.394 0.606 39 H 0.406 0.594 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.253 0.747 43 H 0.114 0.886 44 H 0.140 0.860 45 H 0.144 0.856 46 H 0.132 0.868 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.741 -4.292 15.550 16.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.137 4.137 3 C -0.178 4.178 4 C -0.110 4.110 5 C 0.046 3.954 6 H 0.089 0.911 7 C -0.008 4.008 8 O -0.381 6.381 9 N -0.367 5.367 10 C 0.301 3.699 11 O -0.434 6.434 12 C -0.156 4.156 13 C 0.066 3.934 14 H 0.041 0.959 15 C -0.521 4.521 16 H 0.063 0.937 17 C -0.174 4.174 18 N -0.557 5.557 19 Si 0.761 3.239 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.193 1.193 23 C -0.045 4.045 24 C -0.146 4.146 25 C -0.144 4.144 26 C -0.166 4.166 27 C -0.146 4.146 28 C -0.162 4.162 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.041 0.959 37 H 0.092 0.908 38 H 0.243 0.757 39 H 0.242 0.758 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.062 0.938 43 H 0.132 0.868 44 H 0.158 0.842 45 H 0.162 0.838 46 H 0.150 0.850 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.321 -3.586 15.046 16.059 hybrid contribution 1.039 0.531 -0.565 1.296 sum -3.282 -3.055 14.481 15.159 Atomic orbital electron populations 1.23767 0.95275 1.02302 1.01827 1.21843 0.95854 0.95875 1.00112 1.20868 1.00289 0.94781 1.01852 1.20795 1.01734 0.94618 0.93894 1.20924 0.86479 0.95438 0.92530 0.91135 1.22483 0.95118 0.88392 0.94770 1.86388 1.49513 1.24983 1.77246 1.45885 1.14107 1.70779 1.05954 1.20938 0.90663 0.75901 0.82404 1.90724 1.36194 1.46233 1.70257 1.21658 0.95121 1.02117 0.96751 1.17584 0.90951 0.95993 0.88848 0.95892 1.20917 1.22786 0.91685 1.16663 0.93705 1.25461 0.96344 0.99744 0.95884 1.70050 1.31667 1.34348 1.19620 0.86001 0.78290 0.82665 0.76978 1.20839 1.21462 1.19287 1.20577 0.95421 0.92341 0.96206 1.21029 0.92799 0.99602 1.01179 1.21366 0.98506 0.97859 0.96673 1.21262 0.98147 0.97172 1.00014 1.21285 0.93103 1.00694 0.99514 1.21095 0.98002 0.98589 0.98529 0.88464 0.87652 0.91648 0.93239 0.90198 0.89390 0.88664 0.95878 0.90844 0.75693 0.75816 0.89611 0.88965 0.93815 0.86795 0.84177 0.83839 0.85030 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.09 13.52 67.78 0.92 -3.18 16 2 C -0.14 -3.00 5.08 -16.49 -0.08 -3.09 16 3 C -0.12 -2.56 10.05 71.24 0.72 -1.85 16 4 C -0.07 -1.50 4.56 29.85 0.14 -1.37 16 5 C 0.15 4.16 2.36 45.00 0.11 4.27 16 6 H 0.07 2.36 7.58 -2.39 -0.02 2.34 16 7 C 0.07 1.76 6.85 71.98 0.49 2.26 16 8 O -0.57 -11.90 12.83 -148.98 -1.91 -13.81 16 9 N -0.71 -21.86 4.57 -442.53 -2.02 -23.89 16 10 C 0.51 21.22 7.54 87.66 0.66 21.88 16 11 O -0.56 -29.17 14.65 -3.04 -0.04 -29.22 16 12 C -0.12 -4.67 4.95 29.85 0.15 -4.52 16 13 C 0.09 4.30 1.67 -12.29 -0.02 4.28 16 14 H 0.02 1.36 6.98 -2.39 -0.02 1.34 16 15 C -0.48 -27.01 6.37 25.60 0.16 -26.85 16 16 H 0.04 2.48 7.82 -2.91 -0.02 2.45 16 17 C 0.02 1.43 5.45 84.65 0.46 1.89 16 18 N -0.92 -57.09 12.87 21.45 0.28 -56.81 16 19 Si 0.93 47.39 29.54 68.60 2.03 49.41 16 20 H -0.28 -14.39 7.11 99.48 0.71 -13.69 16 21 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 22 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 23 C -0.04 -2.05 4.77 -19.86 -0.09 -2.14 16 24 C -0.13 -5.11 8.86 22.27 0.20 -4.91 16 25 C -0.13 -4.19 10.05 22.27 0.22 -3.96 16 26 C -0.15 -4.69 10.05 22.27 0.22 -4.46 16 27 C -0.13 -4.57 10.05 22.27 0.22 -4.35 16 28 C -0.14 -6.29 9.67 22.27 0.22 -6.08 16 29 H 0.10 1.97 8.05 -2.91 -0.02 1.95 16 30 H 0.11 1.96 7.82 -2.91 -0.02 1.94 16 31 H 0.06 1.29 8.00 -2.39 -0.02 1.27 16 32 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 34 H 0.09 1.72 7.57 -2.39 -0.02 1.70 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 38 H 0.39 4.88 9.12 -74.06 -0.68 4.20 16 39 H 0.41 10.30 8.22 -92.71 -0.76 9.54 16 40 H 0.09 3.02 8.14 -2.38 -0.02 3.00 16 41 H 0.09 3.36 7.77 -2.39 -0.02 3.34 16 42 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 43 H 0.11 4.40 7.76 -2.91 -0.02 4.38 16 44 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 45 H 0.14 3.43 8.06 -2.92 -0.02 3.41 16 46 H 0.13 3.91 8.06 -2.91 -0.02 3.88 16 47 H 0.09 4.31 7.95 -2.91 -0.02 4.29 16 Total: -1.00 -75.24 393.59 2.53 -72.71 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: -0.48 Total: 33.77 kcal Atomic # 6 Polarization: -36.86 SS G_CDS: 4.69 Total: -32.17 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -1.75 Total: -80.70 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -1.96 Total: -43.03 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.41 kcal Total: -75.24 2.53 -72.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882899958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.382 kcal (2) G-P(sol) polarization free energy of solvation -75.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds