Wall clock time and date at job start Tue Mar 31 2020 11:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00064 * 2 1 4 4 C 1.50705 * 119.99708 * 179.97438 * 2 1 3 5 5 C 1.53003 * 109.46673 * 95.00691 * 4 2 1 6 6 H 1.08993 * 109.47008 * 304.99449 * 5 4 2 7 7 C 1.53004 * 109.46747 * 184.99800 * 5 4 2 8 8 O 1.42898 * 109.47249 * 304.99793 * 7 5 4 9 9 N 1.46493 * 109.47222 * 64.99830 * 5 4 2 10 10 C 1.34775 * 120.00079 * 204.99685 * 9 5 4 11 11 O 1.21287 * 119.99975 * 0.02562 * 10 9 5 12 12 C 1.50701 * 120.00290 * 179.97438 * 10 9 5 13 13 C 1.53007 * 109.47009 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.46585 * 55.00324 * 13 12 10 15 15 C 1.50693 * 109.47281 * 295.00138 * 13 12 10 16 16 H 1.07998 * 120.00582 * 325.12588 * 15 13 12 17 17 C 1.37879 * 119.99932 * 145.12585 * 15 13 12 18 18 N 1.31511 * 120.00307 * 184.99011 * 17 15 13 19 19 Si 1.86804 * 120.00066 * 4.99040 * 17 15 13 20 20 H 1.48498 * 109.47245 * 84.72695 * 19 17 15 21 21 H 1.48494 * 109.47294 * 204.72892 * 19 17 15 22 22 H 1.48510 * 109.46684 * 324.72872 * 19 17 15 23 23 C 1.50704 * 109.46754 * 174.99812 * 13 12 10 24 24 C 1.38234 * 119.99606 * 64.69922 * 23 13 12 25 25 C 1.38232 * 119.99616 * 179.78689 * 24 23 13 26 26 C 1.38231 * 120.00137 * 0.43310 * 25 24 23 27 27 C 1.38233 * 120.00280 * 359.82233 * 26 25 24 28 28 C 1.38230 * 120.00079 * 244.96406 * 23 13 12 29 29 H 1.08003 * 120.00394 * 180.02562 * 1 2 3 30 30 H 1.08006 * 120.00017 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.46701 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.46754 * 239.99605 * 3 2 1 33 33 H 1.09001 * 109.46913 * 119.99288 * 3 2 1 34 34 H 1.08998 * 109.46849 * 215.00427 * 4 2 1 35 35 H 1.08990 * 109.47275 * 335.00372 * 4 2 1 36 36 H 1.09002 * 109.47058 * 64.99497 * 7 5 4 37 37 H 1.08993 * 109.47121 * 185.00067 * 7 5 4 38 38 H 0.96700 * 114.00549 * 180.02562 * 8 7 5 39 39 H 0.97000 * 120.00306 * 25.00160 * 9 5 4 40 40 H 1.08994 * 109.47073 * 300.00287 * 12 10 9 41 41 H 1.09000 * 109.46862 * 60.00718 * 12 10 9 42 42 H 0.97004 * 120.00216 * 180.02562 * 18 17 15 43 43 H 1.08003 * 120.00212 * 359.97438 * 24 23 13 44 44 H 1.08004 * 120.00066 * 180.27299 * 25 24 23 45 45 H 1.08008 * 119.99839 * 179.83446 * 26 25 24 46 46 H 1.08001 * 120.00496 * 179.97438 * 27 26 25 47 47 H 1.08005 * 120.00117 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3052 0.0006 5 6 2.4274 -1.6845 -1.4363 6 1 1.5246 -1.7041 -2.0466 7 6 3.0815 -3.0676 -1.4485 8 8 4.1983 -3.0743 -0.5571 9 7 3.3630 -0.6970 -1.9800 10 6 3.4422 -0.5054 -3.3117 11 8 2.7384 -1.1503 -4.0600 12 6 4.4042 0.5108 -3.8710 13 6 4.2963 0.5293 -5.3971 14 1 3.2603 0.7066 -5.6859 15 6 4.7518 -0.7969 -5.9491 16 1 5.5548 -1.3352 -5.4676 17 6 4.1433 -1.3232 -7.0688 18 7 4.4723 -2.5237 -7.4931 19 14 2.8514 -0.3309 -7.9832 20 1 3.5184 0.5845 -8.9435 21 1 1.9507 -1.2522 -8.7216 22 1 2.0581 0.4637 -7.0113 23 6 5.1668 1.6288 -5.9489 24 6 6.5391 1.5673 -5.7939 25 6 7.3379 2.5737 -6.3038 26 6 6.7639 3.6459 -6.9608 27 6 5.3913 3.7100 -7.1112 28 6 4.5927 2.7015 -6.6050 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.3552 2.1335 -0.0005 32 1 2.6902 1.3628 -0.8900 33 1 2.6900 1.3629 0.8901 34 1 2.9741 -1.1987 0.5900 35 1 1.4385 -2.0853 0.4351 36 1 2.3561 -3.8154 -1.1277 37 1 3.4208 -3.3001 -2.4578 38 1 4.6625 -3.9215 -0.5143 39 1 3.9257 -0.1811 -1.3815 40 1 4.1603 1.4973 -3.4770 41 1 5.4213 0.2455 -3.5823 42 1 4.0444 -2.8938 -8.2811 43 1 6.9873 0.7316 -5.2771 44 1 8.4104 2.5235 -6.1867 45 1 7.3879 4.4334 -7.3569 46 1 4.9427 4.5479 -7.6241 47 1 3.5202 2.7514 -6.7227 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882899960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:13 Heat of formation + Delta-G solvation = -54.433803 kcal Electronic energy + Delta-G solvation = -27118.578639 eV Core-core repulsion = 23459.298492 eV Total energy + Delta-G solvation = -3659.280147 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.50299 -38.55349 -37.24269 -35.97919 -34.16182 -33.45586 -31.66947 -30.42608 -30.19065 -28.68796 -27.25504 -26.16430 -25.76590 -22.75916 -21.90227 -21.27693 -20.01152 -19.23337 -18.52019 -17.34929 -16.92612 -16.47154 -15.90782 -15.65528 -15.13369 -14.74175 -14.47507 -14.28919 -14.06191 -13.79144 -13.76620 -13.54566 -13.14764 -12.83932 -12.69349 -12.55269 -12.32388 -12.20667 -11.92742 -11.80398 -11.74501 -11.51035 -11.23850 -11.10608 -10.80954 -10.77905 -10.49547 -10.35042 -9.92838 -9.83437 -9.58800 -9.13247 -9.04735 -8.89751 -8.44434 -8.39870 -8.22589 -7.80874 -5.96437 -3.92511 2.08892 2.14811 2.20204 3.42790 3.47015 3.48452 3.53526 3.71140 4.42141 4.52540 4.58241 4.71322 4.87774 5.03408 5.31809 5.36586 5.41247 5.47703 5.51628 5.55576 5.57864 5.64162 5.65437 5.69562 5.83862 5.86344 5.93110 5.97498 6.02254 6.04767 6.10630 6.18793 6.24715 6.34264 6.58767 6.64496 6.70675 6.82742 6.84644 7.00225 7.06792 7.14003 7.27024 7.60047 7.69167 7.73845 7.84378 8.14428 8.55496 9.02460 9.09709 9.68548 11.16841 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012002 B = 0.004351 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.379890 B = 6434.399903 C = 7245.192654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.123 4.123 4 C -0.088 4.088 5 C 0.160 3.840 6 H 0.096 0.904 7 C 0.061 3.939 8 O -0.570 6.570 9 N -0.733 5.733 10 C 0.514 3.486 11 O -0.503 6.503 12 C -0.115 4.115 13 C 0.047 3.953 14 H 0.057 0.943 15 C -0.482 4.482 16 H 0.070 0.930 17 C 0.086 3.914 18 N -0.900 5.900 19 Si 0.870 3.130 20 H -0.277 1.277 21 H -0.292 1.292 22 H -0.261 1.261 23 C -0.039 4.039 24 C -0.101 4.101 25 C -0.126 4.126 26 C -0.150 4.150 27 C -0.124 4.124 28 C -0.141 4.141 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.061 0.939 38 H 0.376 0.624 39 H 0.394 0.606 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.261 0.739 43 H 0.120 0.880 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.843 6.426 14.690 16.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.117 4.117 3 C -0.179 4.179 4 C -0.125 4.125 5 C 0.054 3.946 6 H 0.114 0.886 7 C -0.018 4.018 8 O -0.375 6.375 9 N -0.388 5.388 10 C 0.301 3.699 11 O -0.375 6.375 12 C -0.155 4.155 13 C 0.027 3.973 14 H 0.075 0.925 15 C -0.519 4.519 16 H 0.088 0.912 17 C -0.116 4.116 18 N -0.537 5.537 19 Si 0.699 3.301 20 H -0.203 1.203 21 H -0.219 1.219 22 H -0.186 1.186 23 C -0.040 4.040 24 C -0.120 4.120 25 C -0.144 4.144 26 C -0.168 4.168 27 C -0.142 4.142 28 C -0.159 4.159 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.222 0.778 39 H 0.228 0.772 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.071 0.929 43 H 0.138 0.862 44 H 0.128 0.872 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.608 6.415 14.041 15.655 hybrid contribution -0.247 -0.051 -0.594 0.646 sum -2.855 6.363 13.446 15.148 Atomic orbital electron populations 1.23668 0.95221 1.01658 1.03429 1.21728 0.95360 0.95818 0.98787 1.20961 1.00412 0.94237 1.02334 1.20857 1.00650 0.94625 0.96409 1.20859 0.93024 0.86944 0.93775 0.88592 1.22715 0.88136 0.97119 0.93872 1.86409 1.45873 1.38982 1.66265 1.46148 1.43005 1.42156 1.07532 1.20804 0.83940 0.84119 0.81021 1.90735 1.42521 1.46836 1.57419 1.21631 0.98652 0.96108 0.99157 1.18302 0.95900 0.93466 0.89614 0.92466 1.20577 1.19192 1.00545 1.11617 0.91160 1.24855 0.95675 0.94231 0.96811 1.69884 1.43550 1.15543 1.24750 0.86970 0.82665 0.80470 0.80013 1.20297 1.21877 1.18636 1.20805 0.95045 0.93201 0.94918 1.20976 0.93490 0.97582 0.99903 1.21063 0.99029 0.95001 0.99332 1.20861 0.94791 0.98951 1.02222 1.20960 0.93986 0.98711 1.00583 1.21081 0.99251 0.94731 1.00829 0.88671 0.88704 0.92266 0.90921 0.91716 0.89960 0.90419 0.93562 0.92058 0.77807 0.77192 0.91553 0.89912 0.92919 0.86209 0.87168 0.87406 0.87353 0.87331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.15 13.90 29.02 0.40 -1.75 16 2 C -0.12 -1.28 5.14 -101.06 -0.52 -1.80 16 3 C -0.12 -1.22 9.83 36.01 0.35 -0.86 16 4 C -0.09 -0.96 4.64 -27.88 -0.13 -1.09 16 5 C 0.16 2.21 2.36 -67.93 -0.16 2.05 16 6 H 0.10 1.51 7.58 -51.93 -0.39 1.12 16 7 C 0.06 0.83 6.85 37.16 0.25 1.08 16 8 O -0.57 -7.01 12.83 -35.23 -0.45 -7.46 16 9 N -0.73 -10.99 3.89 -53.81 -0.21 -11.20 16 10 C 0.51 10.06 7.54 -10.99 -0.08 9.98 16 11 O -0.50 -12.28 14.65 5.55 0.08 -12.20 16 12 C -0.12 -2.17 4.96 -27.88 -0.14 -2.30 16 13 C 0.05 1.07 1.21 -92.92 -0.11 0.95 16 14 H 0.06 1.42 4.70 -51.93 -0.24 1.18 16 15 C -0.48 -13.25 6.87 -34.44 -0.24 -13.49 16 16 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 17 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 18 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 19 Si 0.87 22.92 27.15 -169.99 -4.62 18.31 16 20 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.29 -7.76 7.11 56.52 0.40 -7.35 16 22 H -0.26 -6.65 6.06 56.52 0.34 -6.31 16 23 C -0.04 -0.82 4.55 -104.62 -0.48 -1.30 16 24 C -0.10 -1.98 8.87 -39.58 -0.35 -2.33 16 25 C -0.13 -2.15 10.05 -39.59 -0.40 -2.55 16 26 C -0.15 -2.45 10.05 -39.59 -0.40 -2.85 16 27 C -0.12 -2.14 10.05 -39.58 -0.40 -2.54 16 28 C -0.14 -2.77 9.43 -39.58 -0.37 -3.14 16 29 H 0.09 0.94 7.99 -52.48 -0.42 0.52 16 30 H 0.09 0.93 7.83 -52.48 -0.41 0.52 16 31 H 0.06 0.55 7.78 -51.93 -0.40 0.15 16 32 H 0.07 0.77 6.35 -51.93 -0.33 0.44 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.90 7.73 -51.93 -0.40 0.49 16 35 H 0.08 0.77 7.99 -51.93 -0.41 0.35 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.38 3.21 9.12 45.56 0.42 3.63 16 39 H 0.39 4.99 7.51 -40.82 -0.31 4.69 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.08 1.47 7.86 -51.93 -0.41 1.07 16 42 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 43 H 0.12 2.31 7.80 -52.48 -0.41 1.90 16 44 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 45 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 46 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 47 H 0.11 2.08 7.95 -52.48 -0.42 1.66 16 LS Contribution 385.81 15.07 5.81 5.81 Total: -1.00 -34.16 385.81 -8.19 -42.34 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -6.72 Total: 11.21 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -2.86 Total: -19.47 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.56 Total: -38.55 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.37 Total: -19.65 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.62 Total: 18.31 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.16 -8.19 -42.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882899960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.091 kcal (2) G-P(sol) polarization free energy of solvation -34.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds