Wall clock time and date at job start Tue Mar 31 2020 11:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00064 * 2 1 4 4 C 1.50705 * 119.99708 * 179.97438 * 2 1 3 5 5 C 1.53003 * 109.46673 * 95.00691 * 4 2 1 6 6 H 1.08993 * 109.47008 * 304.99449 * 5 4 2 7 7 C 1.53004 * 109.46747 * 184.99800 * 5 4 2 8 8 O 1.42898 * 109.47249 * 304.99793 * 7 5 4 9 9 N 1.46493 * 109.47222 * 64.99830 * 5 4 2 10 10 C 1.34775 * 120.00079 * 204.99685 * 9 5 4 11 11 O 1.21287 * 119.99975 * 0.02562 * 10 9 5 12 12 C 1.50701 * 120.00290 * 179.97438 * 10 9 5 13 13 C 1.53007 * 109.47009 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.46585 * 55.00324 * 13 12 10 15 15 C 1.50693 * 109.47281 * 295.00138 * 13 12 10 16 16 H 1.07998 * 120.00582 * 325.12588 * 15 13 12 17 17 C 1.37879 * 119.99932 * 145.12585 * 15 13 12 18 18 N 1.31511 * 120.00307 * 184.99011 * 17 15 13 19 19 Si 1.86804 * 120.00066 * 4.99040 * 17 15 13 20 20 H 1.48498 * 109.47245 * 84.72695 * 19 17 15 21 21 H 1.48494 * 109.47294 * 204.72892 * 19 17 15 22 22 H 1.48510 * 109.46684 * 324.72872 * 19 17 15 23 23 C 1.50704 * 109.46754 * 174.99812 * 13 12 10 24 24 C 1.38234 * 119.99606 * 64.69922 * 23 13 12 25 25 C 1.38232 * 119.99616 * 179.78689 * 24 23 13 26 26 C 1.38231 * 120.00137 * 0.43310 * 25 24 23 27 27 C 1.38233 * 120.00280 * 359.82233 * 26 25 24 28 28 C 1.38230 * 120.00079 * 244.96406 * 23 13 12 29 29 H 1.08003 * 120.00394 * 180.02562 * 1 2 3 30 30 H 1.08006 * 120.00017 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.46701 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.46754 * 239.99605 * 3 2 1 33 33 H 1.09001 * 109.46913 * 119.99288 * 3 2 1 34 34 H 1.08998 * 109.46849 * 215.00427 * 4 2 1 35 35 H 1.08990 * 109.47275 * 335.00372 * 4 2 1 36 36 H 1.09002 * 109.47058 * 64.99497 * 7 5 4 37 37 H 1.08993 * 109.47121 * 185.00067 * 7 5 4 38 38 H 0.96700 * 114.00549 * 180.02562 * 8 7 5 39 39 H 0.97000 * 120.00306 * 25.00160 * 9 5 4 40 40 H 1.08994 * 109.47073 * 300.00287 * 12 10 9 41 41 H 1.09000 * 109.46862 * 60.00718 * 12 10 9 42 42 H 0.97004 * 120.00216 * 180.02562 * 18 17 15 43 43 H 1.08003 * 120.00212 * 359.97438 * 24 23 13 44 44 H 1.08004 * 120.00066 * 180.27299 * 25 24 23 45 45 H 1.08008 * 119.99839 * 179.83446 * 26 25 24 46 46 H 1.08001 * 120.00496 * 179.97438 * 27 26 25 47 47 H 1.08005 * 120.00117 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3052 0.0006 5 6 2.4274 -1.6845 -1.4363 6 1 1.5246 -1.7041 -2.0466 7 6 3.0815 -3.0676 -1.4485 8 8 4.1983 -3.0743 -0.5571 9 7 3.3630 -0.6970 -1.9800 10 6 3.4422 -0.5054 -3.3117 11 8 2.7384 -1.1503 -4.0600 12 6 4.4042 0.5108 -3.8710 13 6 4.2963 0.5293 -5.3971 14 1 3.2603 0.7066 -5.6859 15 6 4.7518 -0.7969 -5.9491 16 1 5.5548 -1.3352 -5.4676 17 6 4.1433 -1.3232 -7.0688 18 7 4.4723 -2.5237 -7.4931 19 14 2.8514 -0.3309 -7.9832 20 1 3.5184 0.5845 -8.9435 21 1 1.9507 -1.2522 -8.7216 22 1 2.0581 0.4637 -7.0113 23 6 5.1668 1.6288 -5.9489 24 6 6.5391 1.5673 -5.7939 25 6 7.3379 2.5737 -6.3038 26 6 6.7639 3.6459 -6.9608 27 6 5.3913 3.7100 -7.1112 28 6 4.5927 2.7015 -6.6050 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.3552 2.1335 -0.0005 32 1 2.6902 1.3628 -0.8900 33 1 2.6900 1.3629 0.8901 34 1 2.9741 -1.1987 0.5900 35 1 1.4385 -2.0853 0.4351 36 1 2.3561 -3.8154 -1.1277 37 1 3.4208 -3.3001 -2.4578 38 1 4.6625 -3.9215 -0.5143 39 1 3.9257 -0.1811 -1.3815 40 1 4.1603 1.4973 -3.4770 41 1 5.4213 0.2455 -3.5823 42 1 4.0444 -2.8938 -8.2811 43 1 6.9873 0.7316 -5.2771 44 1 8.4104 2.5235 -6.1867 45 1 7.3879 4.4334 -7.3569 46 1 4.9427 4.5479 -7.6241 47 1 3.5202 2.7514 -6.7227 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882899960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:12 Heat of formation + Delta-G solvation = -77.718305 kcal Electronic energy + Delta-G solvation = -27119.588331 eV Core-core repulsion = 23459.298492 eV Total energy + Delta-G solvation = -3660.289839 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.95129 -39.95608 -38.49893 -36.92477 -35.86689 -34.77106 -33.72092 -31.69589 -31.56274 -30.10411 -28.11862 -27.64549 -27.12126 -24.44999 -23.31779 -22.52252 -21.42348 -20.81567 -19.46933 -19.02972 -18.44144 -17.93568 -17.20974 -16.96311 -16.50963 -16.17132 -15.85988 -15.69657 -15.47609 -15.14323 -14.85034 -14.70868 -14.67873 -14.44058 -14.13966 -13.87048 -13.78844 -13.63515 -13.37719 -13.11910 -12.90491 -12.76027 -12.71381 -12.37134 -12.20241 -12.04164 -11.88738 -11.82466 -11.74865 -11.46990 -11.01344 -11.01116 -10.71593 -10.44123 -10.08860 -9.68052 -9.63374 -9.30666 -8.22075 -6.17528 0.67357 0.72787 1.28862 1.32154 1.35911 1.38153 1.98103 2.39029 2.40020 3.08020 3.22286 3.40053 3.78242 3.98059 4.05988 4.12756 4.18279 4.30937 4.31519 4.33576 4.41109 4.45432 4.49728 4.52181 4.64824 4.70323 4.81108 4.84669 4.86811 4.90177 4.91371 5.06155 5.08338 5.17035 5.19177 5.21900 5.38313 5.40812 5.67604 5.71769 5.76113 5.77219 5.82581 6.02200 6.02423 6.33177 6.36643 6.80496 6.80862 6.83578 7.45372 7.60752 8.95296 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012002 B = 0.004351 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.379890 B = 6434.399903 C = 7245.192654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.131 4.131 3 C -0.123 4.123 4 C -0.074 4.074 5 C 0.155 3.845 6 H 0.074 0.926 7 C 0.068 3.932 8 O -0.573 6.573 9 N -0.712 5.712 10 C 0.511 3.489 11 O -0.561 6.561 12 C -0.111 4.111 13 C 0.049 3.951 14 H 0.037 0.963 15 C -0.459 4.459 16 H 0.033 0.967 17 C 0.025 3.975 18 N -0.952 5.952 19 Si 0.920 3.080 20 H -0.266 1.266 21 H -0.299 1.299 22 H -0.251 1.251 23 C -0.063 4.063 24 C -0.119 4.119 25 C -0.124 4.124 26 C -0.140 4.140 27 C -0.123 4.123 28 C -0.157 4.157 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.016 0.984 38 H 0.393 0.607 39 H 0.409 0.591 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.258 0.742 43 H 0.109 0.891 44 H 0.140 0.860 45 H 0.147 0.853 46 H 0.141 0.859 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.251 9.528 16.094 18.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.131 4.131 3 C -0.180 4.180 4 C -0.112 4.112 5 C 0.050 3.950 6 H 0.092 0.908 7 C -0.011 4.011 8 O -0.380 6.380 9 N -0.366 5.366 10 C 0.299 3.701 11 O -0.438 6.438 12 C -0.151 4.151 13 C 0.030 3.970 14 H 0.055 0.945 15 C -0.496 4.496 16 H 0.052 0.948 17 C -0.171 4.171 18 N -0.594 5.594 19 Si 0.747 3.253 20 H -0.192 1.192 21 H -0.226 1.226 22 H -0.176 1.176 23 C -0.064 4.064 24 C -0.137 4.137 25 C -0.142 4.142 26 C -0.158 4.158 27 C -0.141 4.141 28 C -0.176 4.176 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.035 0.965 38 H 0.242 0.758 39 H 0.245 0.755 40 H 0.120 0.880 41 H 0.110 0.890 42 H 0.066 0.934 43 H 0.127 0.873 44 H 0.158 0.842 45 H 0.165 0.835 46 H 0.158 0.842 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.990 9.553 15.517 18.330 hybrid contribution -0.329 -0.954 -0.895 1.349 sum -2.319 8.599 14.622 17.121 Atomic orbital electron populations 1.23854 0.95353 1.02325 1.02650 1.21866 0.95657 0.96154 0.99414 1.20983 1.00552 0.93869 1.02598 1.20757 1.01232 0.95266 0.93916 1.20970 0.91863 0.86848 0.95304 0.90807 1.22512 0.89031 0.97627 0.91922 1.86358 1.45653 1.40654 1.65364 1.45930 1.42668 1.41823 1.06226 1.20987 0.83345 0.83670 0.82117 1.90716 1.44946 1.49027 1.59102 1.21564 0.99027 0.97904 0.96647 1.18144 0.94924 0.91853 0.92081 0.94494 1.20773 1.16755 1.02090 1.10028 0.94826 1.25563 0.98078 0.95120 0.98359 1.70027 1.45922 1.17551 1.25917 0.86161 0.80696 0.79298 0.79136 1.19151 1.22625 1.17599 1.20522 0.95355 0.93761 0.96760 1.21012 0.93250 0.98448 1.00995 1.21408 1.00389 0.94175 0.98186 1.21344 0.94897 0.99162 1.00418 1.21340 0.94412 0.98649 0.99659 1.21210 0.99711 0.95376 1.01263 0.88219 0.88003 0.91781 0.91831 0.90168 0.89276 0.88946 0.90986 0.96532 0.75790 0.75465 0.87997 0.89045 0.93364 0.87270 0.84244 0.83504 0.84169 0.87484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.02 13.90 67.78 0.94 -3.08 16 2 C -0.13 -2.63 5.14 -16.48 -0.08 -2.72 16 3 C -0.12 -2.19 9.83 71.24 0.70 -1.49 16 4 C -0.07 -1.50 4.64 29.85 0.14 -1.36 16 5 C 0.16 4.29 2.36 45.00 0.11 4.39 16 6 H 0.07 2.40 7.58 -2.39 -0.02 2.39 16 7 C 0.07 1.87 6.85 71.98 0.49 2.37 16 8 O -0.57 -13.45 12.83 -148.98 -1.91 -15.36 16 9 N -0.71 -21.24 3.89 -442.54 -1.72 -22.96 16 10 C 0.51 20.49 7.54 87.66 0.66 21.15 16 11 O -0.56 -28.75 14.65 -3.05 -0.04 -28.79 16 12 C -0.11 -4.20 4.96 29.85 0.15 -4.05 16 13 C 0.05 2.30 1.21 -12.28 -0.01 2.28 16 14 H 0.04 1.87 4.70 -2.39 -0.01 1.86 16 15 C -0.46 -26.34 6.87 25.60 0.18 -26.16 16 16 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 17 C 0.02 1.54 5.47 84.66 0.46 2.00 16 18 N -0.95 -62.79 13.96 21.45 0.30 -62.49 16 19 Si 0.92 48.82 27.15 68.60 1.86 50.68 16 20 H -0.27 -13.47 7.11 99.48 0.71 -12.76 16 21 H -0.30 -16.01 7.11 99.48 0.71 -15.31 16 22 H -0.25 -12.77 6.06 99.48 0.60 -12.17 16 23 C -0.06 -2.63 4.55 -19.87 -0.09 -2.72 16 24 C -0.12 -4.51 8.87 22.27 0.20 -4.32 16 25 C -0.12 -3.82 10.05 22.27 0.22 -3.60 16 26 C -0.14 -3.93 10.05 22.27 0.22 -3.71 16 27 C -0.12 -3.75 10.05 22.27 0.22 -3.53 16 28 C -0.16 -5.89 9.43 22.27 0.21 -5.68 16 29 H 0.10 1.83 7.99 -2.91 -0.02 1.80 16 30 H 0.10 1.83 7.83 -2.91 -0.02 1.80 16 31 H 0.06 1.06 7.78 -2.39 -0.02 1.04 16 32 H 0.06 1.23 6.35 -2.39 -0.02 1.22 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 34 H 0.09 1.71 7.73 -2.39 -0.02 1.69 16 35 H 0.09 1.62 7.99 -2.39 -0.02 1.60 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.39 6.27 9.12 -74.06 -0.68 5.60 16 39 H 0.41 9.83 7.51 -92.71 -0.70 9.13 16 40 H 0.10 3.09 8.14 -2.39 -0.02 3.08 16 41 H 0.09 3.27 7.86 -2.39 -0.02 3.25 16 42 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 43 H 0.11 4.26 7.80 -2.91 -0.02 4.24 16 44 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 45 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 46 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 47 H 0.11 3.95 7.95 -2.91 -0.02 3.93 16 Total: -1.00 -78.86 385.81 2.69 -76.16 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: -0.51 Total: 32.97 kcal Atomic # 6 Polarization: -34.93 SS G_CDS: 4.72 Total: -30.21 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -1.42 Total: -85.45 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -1.96 Total: -44.15 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 1.86 Total: 50.68 kcal Total: -78.86 2.69 -76.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882899960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.558 kcal (2) G-P(sol) polarization free energy of solvation -78.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds