Wall clock time and date at job start Tue Mar 31 2020 12:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.46915 * 2 1 4 4 C 1.52999 * 109.47316 * 119.99994 * 2 1 3 5 5 N 1.46492 * 109.47289 * 300.00283 * 4 2 1 6 6 C 1.34776 * 120.00462 * 179.72568 * 5 4 2 7 7 O 1.21283 * 119.99384 * 0.27147 * 6 5 4 8 8 C 1.50698 * 120.00439 * 180.27514 * 6 5 4 9 9 C 1.50705 * 109.47009 * 179.97438 * 8 6 5 10 10 C 1.38323 * 119.96094 * 269.72228 * 9 8 6 11 11 C 1.38286 * 120.13434 * 179.76714 * 10 9 8 12 12 C 1.38122 * 120.06921 * 0.51053 * 11 10 9 13 13 C 1.38859 * 119.92905 * 359.74356 * 12 11 10 14 14 O 1.35749 * 120.06764 * 179.97438 * 13 12 11 15 15 C 1.34828 * 117.00413 * 354.49385 * 14 13 12 16 16 H 1.08002 * 119.99386 * 5.05210 * 15 14 13 17 17 C 1.38649 * 120.00623 * 185.04993 * 15 14 13 18 18 N 1.31564 * 119.99701 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00414 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46790 * 60.00243 * 19 17 15 21 21 H 1.48496 * 109.47242 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47140 * 300.00264 * 19 17 15 23 23 C 1.38077 * 119.96554 * 89.99708 * 9 8 6 24 24 C 1.52995 * 109.47304 * 240.00342 * 2 1 3 25 25 C 1.52998 * 117.50028 * 128.74326 * 24 2 1 26 26 C 1.53006 * 117.50081 * 60.08261 * 24 2 1 27 27 H 1.09000 * 109.47178 * 300.00059 * 1 2 3 28 28 H 1.08997 * 109.47523 * 59.99941 * 1 2 3 29 29 H 1.08999 * 109.47089 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46993 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47073 * 300.00334 * 3 2 1 32 32 H 1.09004 * 109.46888 * 60.00638 * 3 2 1 33 33 H 1.09006 * 109.47008 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.46691 * 60.00243 * 4 2 1 35 35 H 0.97006 * 119.99889 * 359.97438 * 5 4 2 36 36 H 1.09000 * 109.46894 * 299.99620 * 8 6 5 37 37 H 1.08998 * 109.47281 * 60.00001 * 8 6 5 38 38 H 1.07997 * 119.93400 * 359.97438 * 10 9 8 39 39 H 1.07999 * 119.96470 * 180.25701 * 11 10 9 40 40 H 1.08001 * 120.03550 * 179.76587 * 12 11 10 41 41 H 0.97003 * 119.99793 * 179.97438 * 18 17 15 42 42 H 1.07995 * 120.03372 * 359.95974 * 23 9 8 43 43 H 1.09002 * 115.55176 * 274.41784 * 24 2 1 44 44 H 1.09003 * 117.50161 * 0.02562 * 25 24 2 45 45 H 1.09003 * 117.49981 * 145.02377 * 25 24 2 46 46 H 1.08996 * 117.50136 * 214.98391 * 26 24 2 47 47 H 1.09000 * 117.49390 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.5517 -0.0307 2.4454 6 6 1.8727 -0.4944 3.6695 7 8 2.5700 -1.4805 3.7807 8 6 1.3652 0.2123 4.8999 9 6 1.8627 -0.5016 6.1304 10 6 1.1096 -1.5171 6.6917 11 6 1.5648 -2.1779 7.8179 12 6 2.7686 -1.8184 8.3919 13 6 3.5244 -0.7959 7.8338 14 8 4.7076 -0.4400 8.3959 15 6 5.0380 -1.0387 9.5579 16 1 4.4130 -1.8236 9.9577 17 6 6.1800 -0.6470 10.2396 18 7 6.9411 0.3094 9.7528 19 14 6.6373 -1.4760 11.8499 20 1 6.8382 -2.9291 11.6189 21 1 7.8918 -0.8797 12.3749 22 1 5.5450 -1.2780 12.8363 23 6 3.0669 -0.1377 6.6994 24 6 2.0400 -0.7211 -1.2492 25 6 3.0762 0.0041 -2.1101 26 6 1.6373 -0.1482 -2.6096 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 3.1300 -0.7216 1.2489 34 1 1.6767 -1.7489 1.2491 35 1 0.9942 0.7582 2.3564 36 1 1.7281 1.2402 4.9042 37 1 0.2753 0.2118 4.8957 38 1 0.1657 -1.7966 6.2476 39 1 0.9766 -2.9731 8.2515 40 1 3.1219 -2.3323 9.2737 41 1 7.7399 0.5838 10.2300 42 1 3.6525 0.6578 6.2629 43 1 2.1253 -1.8045 -1.1648 44 1 3.3950 0.9949 -1.7862 45 1 3.8431 -0.6021 -2.5923 46 1 1.4581 -0.8546 -3.4202 47 1 1.0094 0.7427 -2.6145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887375558.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:39 Heat of formation + Delta-G solvation = -25.528516 kcal Electronic energy + Delta-G solvation = -25679.735947 eV Core-core repulsion = 22021.709227 eV Total energy + Delta-G solvation = -3658.026720 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.17569 -39.21197 -38.52939 -36.43846 -35.26012 -32.61434 -32.25127 -31.75029 -29.15636 -27.78986 -27.71364 -26.18957 -25.14669 -23.15545 -22.55839 -21.58816 -21.03376 -20.18670 -18.78517 -17.64289 -17.23953 -16.85721 -16.01083 -15.93258 -15.59000 -14.99536 -14.81459 -14.49048 -14.31396 -14.10431 -13.89846 -13.57650 -13.33743 -13.31523 -12.90171 -12.74518 -12.51183 -12.34742 -12.16875 -11.90666 -11.70980 -11.45346 -11.39948 -11.36056 -11.19849 -11.02128 -10.77309 -10.71965 -10.58055 -10.54991 -10.40922 -10.25529 -9.65510 -9.26849 -9.03368 -8.76703 -7.98418 -7.13984 -6.37510 -3.96455 2.17405 2.47260 2.85980 3.17513 3.17846 3.21375 3.25014 3.47694 4.02654 4.22959 4.33704 4.50133 4.61736 4.68480 4.80271 4.81973 4.97019 5.06806 5.17144 5.18922 5.25175 5.28650 5.32787 5.42974 5.48589 5.49944 5.56749 5.62419 5.64770 5.72172 5.75098 5.79191 5.82603 5.85995 5.96100 6.00770 6.01233 6.25323 6.41589 6.44577 6.73812 6.99767 7.14368 7.34711 7.44259 7.51014 7.53452 7.91029 8.07716 8.40234 9.08195 9.79831 10.80817 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022794 B = 0.002263 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.112737 B =12372.656153 C =13082.100240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.045 4.045 3 C -0.147 4.147 4 C 0.133 3.867 5 N -0.737 5.737 6 C 0.512 3.488 7 O -0.519 6.519 8 C -0.094 4.094 9 C -0.032 4.032 10 C -0.197 4.197 11 C -0.075 4.075 12 C -0.231 4.231 13 C 0.154 3.846 14 O -0.180 6.180 15 C -0.390 4.390 16 H 0.091 0.909 17 C 0.038 3.962 18 N -0.865 5.865 19 Si 0.940 3.060 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.174 4.174 24 C -0.142 4.142 25 C -0.183 4.183 26 C -0.177 4.177 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.397 0.603 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.269 0.731 42 H 0.113 0.887 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.013 2.152 -20.756 25.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.045 4.045 3 C -0.204 4.204 4 C 0.009 3.991 5 N -0.392 5.392 6 C 0.299 3.701 7 O -0.393 6.393 8 C -0.134 4.134 9 C -0.033 4.033 10 C -0.216 4.216 11 C -0.093 4.093 12 C -0.250 4.250 13 C 0.101 3.899 14 O -0.084 6.084 15 C -0.467 4.467 16 H 0.108 0.892 17 C -0.166 4.166 18 N -0.501 5.501 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.196 1.196 23 C -0.194 4.194 24 C -0.161 4.161 25 C -0.220 4.220 26 C -0.214 4.214 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.232 0.768 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.144 0.856 41 H 0.079 0.921 42 H 0.131 0.869 43 H 0.124 0.876 44 H 0.120 0.880 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.081 1.700 -20.662 24.514 hybrid contribution -0.020 -0.171 0.700 0.721 sum -13.101 1.529 -19.962 23.926 Atomic orbital electron populations 1.21855 0.93797 1.02338 1.01715 1.20287 0.95915 0.95380 0.92938 1.22033 1.01734 0.94867 1.01801 1.21284 0.99368 0.95768 0.82650 1.46082 1.55121 1.32459 1.05555 1.20747 0.80361 0.84843 0.84184 1.90762 1.36307 1.25721 1.86506 1.20591 1.01925 1.00078 0.90803 1.18658 0.94409 0.96297 0.93900 1.20346 1.00989 1.00550 0.99683 1.20676 0.95350 0.98001 0.95306 1.21168 0.97427 1.02228 1.04221 1.19279 0.86201 0.92125 0.92269 1.83975 1.29165 1.59502 1.35727 1.21265 1.09662 1.18603 0.97138 0.89201 1.25270 0.95418 0.96566 0.99321 1.70039 1.14193 1.27129 1.38709 0.85792 0.78261 0.79104 0.80321 1.19545 1.20338 1.19556 1.19944 0.97220 1.03998 0.98220 1.22210 1.03969 0.99148 0.90725 1.23178 0.92452 1.02653 1.03734 1.22939 0.98278 1.03185 0.96951 0.92512 0.92297 0.92246 0.91769 0.92287 0.92372 0.91385 0.91606 0.76832 0.88335 0.88492 0.87978 0.87512 0.85648 0.92088 0.86864 0.87578 0.88019 0.88961 0.88958 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 8.14 37.15 0.30 -0.56 16 2 C -0.04 -0.32 0.63 -154.51 -0.10 -0.42 16 3 C -0.15 -0.96 6.90 37.16 0.26 -0.71 16 4 C 0.13 1.34 4.55 -4.05 -0.02 1.32 16 5 N -0.74 -7.66 4.96 -60.30 -0.30 -7.96 16 6 C 0.51 7.56 7.82 -10.99 -0.09 7.47 16 7 O -0.52 -10.40 16.03 5.56 0.09 -10.31 16 8 C -0.09 -1.28 5.83 -29.03 -0.17 -1.44 16 9 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 10 C -0.20 -3.65 9.70 -39.53 -0.38 -4.04 16 11 C -0.08 -1.48 10.04 -39.61 -0.40 -1.88 16 12 C -0.23 -5.34 9.17 -39.39 -0.36 -5.70 16 13 C 0.15 3.95 6.65 -39.11 -0.26 3.69 16 14 O -0.18 -5.35 9.76 0.06 0.00 -5.35 16 15 C -0.39 -11.30 9.49 30.88 0.29 -11.00 16 16 H 0.09 2.41 5.20 -52.49 -0.27 2.13 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 18 N -0.87 -26.05 13.67 55.48 0.76 -25.29 16 19 Si 0.94 21.10 29.55 -169.99 -5.02 16.08 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 C -0.17 -3.92 9.65 -39.39 -0.38 -4.30 16 24 C -0.14 -1.00 5.14 -90.62 -0.47 -1.46 16 25 C -0.18 -1.22 9.57 -26.69 -0.26 -1.47 16 26 C -0.18 -1.06 9.39 -26.69 -0.25 -1.31 16 27 H 0.06 0.32 6.86 -51.93 -0.36 -0.03 16 28 H 0.06 0.32 7.29 -51.93 -0.38 -0.06 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.47 6.97 -51.93 -0.36 0.11 16 31 H 0.06 0.34 7.07 -51.93 -0.37 -0.03 16 32 H 0.06 0.36 6.86 -51.93 -0.36 0.00 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.40 2.93 6.16 -40.82 -0.25 2.68 16 36 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 37 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.11 2.47 8.06 -52.49 -0.42 2.05 16 43 H 0.11 0.78 8.11 -51.93 -0.42 0.36 16 44 H 0.10 0.66 5.85 -51.93 -0.30 0.35 16 45 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.09 0.52 7.07 -51.93 -0.37 0.15 16 LS Contribution 380.28 15.07 5.73 5.73 Total: -1.00 -34.81 380.28 -8.66 -43.47 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -7.09 Total: 5.51 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -2.83 Total: -21.89 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.46 Total: -33.24 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.09 Total: -15.66 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.81 -8.66 -43.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887375558.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.940 kcal (2) G-P(sol) polarization free energy of solvation -34.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds