Wall clock time and date at job start Tue Mar 31 2020 12:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.46915 * 2 1 4 4 C 1.52999 * 109.47316 * 119.99994 * 2 1 3 5 5 N 1.46492 * 109.47289 * 300.00283 * 4 2 1 6 6 C 1.34776 * 120.00462 * 179.72568 * 5 4 2 7 7 O 1.21283 * 119.99384 * 0.27147 * 6 5 4 8 8 C 1.50698 * 120.00439 * 180.27514 * 6 5 4 9 9 C 1.50705 * 109.47009 * 179.97438 * 8 6 5 10 10 C 1.38323 * 119.96094 * 269.72228 * 9 8 6 11 11 C 1.38286 * 120.13434 * 179.76714 * 10 9 8 12 12 C 1.38122 * 120.06921 * 0.51053 * 11 10 9 13 13 C 1.38859 * 119.92905 * 359.74356 * 12 11 10 14 14 O 1.35749 * 120.06764 * 179.97438 * 13 12 11 15 15 C 1.34828 * 117.00413 * 354.49385 * 14 13 12 16 16 H 1.08002 * 119.99386 * 5.05210 * 15 14 13 17 17 C 1.38649 * 120.00623 * 185.04993 * 15 14 13 18 18 N 1.31564 * 119.99701 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00414 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46790 * 60.00243 * 19 17 15 21 21 H 1.48496 * 109.47242 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47140 * 300.00264 * 19 17 15 23 23 C 1.38077 * 119.96554 * 89.99708 * 9 8 6 24 24 C 1.52995 * 109.47304 * 240.00342 * 2 1 3 25 25 C 1.52998 * 117.50028 * 128.74326 * 24 2 1 26 26 C 1.53006 * 117.50081 * 60.08261 * 24 2 1 27 27 H 1.09000 * 109.47178 * 300.00059 * 1 2 3 28 28 H 1.08997 * 109.47523 * 59.99941 * 1 2 3 29 29 H 1.08999 * 109.47089 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46993 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47073 * 300.00334 * 3 2 1 32 32 H 1.09004 * 109.46888 * 60.00638 * 3 2 1 33 33 H 1.09006 * 109.47008 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.46691 * 60.00243 * 4 2 1 35 35 H 0.97006 * 119.99889 * 359.97438 * 5 4 2 36 36 H 1.09000 * 109.46894 * 299.99620 * 8 6 5 37 37 H 1.08998 * 109.47281 * 60.00001 * 8 6 5 38 38 H 1.07997 * 119.93400 * 359.97438 * 10 9 8 39 39 H 1.07999 * 119.96470 * 180.25701 * 11 10 9 40 40 H 1.08001 * 120.03550 * 179.76587 * 12 11 10 41 41 H 0.97003 * 119.99793 * 179.97438 * 18 17 15 42 42 H 1.07995 * 120.03372 * 359.95974 * 23 9 8 43 43 H 1.09002 * 115.55176 * 274.41784 * 24 2 1 44 44 H 1.09003 * 117.50161 * 0.02562 * 25 24 2 45 45 H 1.09003 * 117.49981 * 145.02377 * 25 24 2 46 46 H 1.08996 * 117.50136 * 214.98391 * 26 24 2 47 47 H 1.09000 * 117.49390 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.5517 -0.0307 2.4454 6 6 1.8727 -0.4944 3.6695 7 8 2.5700 -1.4805 3.7807 8 6 1.3652 0.2123 4.8999 9 6 1.8627 -0.5016 6.1304 10 6 1.1096 -1.5171 6.6917 11 6 1.5648 -2.1779 7.8179 12 6 2.7686 -1.8184 8.3919 13 6 3.5244 -0.7959 7.8338 14 8 4.7076 -0.4400 8.3959 15 6 5.0380 -1.0387 9.5579 16 1 4.4130 -1.8236 9.9577 17 6 6.1800 -0.6470 10.2396 18 7 6.9411 0.3094 9.7528 19 14 6.6373 -1.4760 11.8499 20 1 6.8382 -2.9291 11.6189 21 1 7.8918 -0.8797 12.3749 22 1 5.5450 -1.2780 12.8363 23 6 3.0669 -0.1377 6.6994 24 6 2.0400 -0.7211 -1.2492 25 6 3.0762 0.0041 -2.1101 26 6 1.6373 -0.1482 -2.6096 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 3.1300 -0.7216 1.2489 34 1 1.6767 -1.7489 1.2491 35 1 0.9942 0.7582 2.3564 36 1 1.7281 1.2402 4.9042 37 1 0.2753 0.2118 4.8957 38 1 0.1657 -1.7966 6.2476 39 1 0.9766 -2.9731 8.2515 40 1 3.1219 -2.3323 9.2737 41 1 7.7399 0.5838 10.2300 42 1 3.6525 0.6578 6.2629 43 1 2.1253 -1.8045 -1.1648 44 1 3.3950 0.9949 -1.7862 45 1 3.8431 -0.6021 -2.5923 46 1 1.4581 -0.8546 -3.4202 47 1 1.0094 0.7427 -2.6145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887375558.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:38 Heat of formation + Delta-G solvation = -47.272815 kcal Electronic energy + Delta-G solvation = -25680.678850 eV Core-core repulsion = 22021.709227 eV Total energy + Delta-G solvation = -3658.969623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.24390 -40.60523 -39.70620 -38.17164 -36.14791 -34.34185 -33.67379 -32.94930 -30.88446 -28.96778 -28.28937 -27.45032 -26.92280 -23.96548 -23.23764 -23.05020 -22.55752 -21.41804 -19.63775 -19.31293 -18.77194 -18.14243 -17.00000 -16.86118 -16.64065 -16.61059 -16.15712 -16.08091 -15.52333 -15.39003 -15.17635 -14.83611 -14.62963 -14.31194 -14.28479 -13.97612 -13.60524 -13.45896 -13.28839 -12.95203 -12.86889 -12.66134 -12.46441 -12.41892 -12.39129 -12.21353 -12.12719 -11.96543 -11.90306 -11.58143 -11.20523 -11.18645 -10.91071 -10.79634 -10.75222 -10.05710 -9.62781 -8.97163 -8.46715 -6.15384 0.53008 0.76610 1.33642 1.45218 1.50519 1.70548 2.17878 2.24542 2.85424 2.93727 3.19018 3.45051 3.63675 3.74852 3.82121 3.93358 4.10962 4.13319 4.16550 4.24626 4.27973 4.32729 4.44707 4.50375 4.59260 4.65717 4.73576 4.74607 4.75824 4.80624 4.87747 4.97142 5.04618 5.06908 5.08866 5.12440 5.13391 5.29177 5.31566 5.33562 5.42175 5.47507 5.49840 5.65845 5.73496 5.76242 6.03079 6.24505 6.60297 6.97586 7.33660 7.79482 8.76714 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022794 B = 0.002263 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.112737 B =12372.656153 C =13082.100240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.034 4.034 3 C -0.147 4.147 4 C 0.134 3.866 5 N -0.713 5.713 6 C 0.512 3.488 7 O -0.582 6.582 8 C -0.091 4.091 9 C -0.025 4.025 10 C -0.181 4.181 11 C -0.074 4.074 12 C -0.248 4.248 13 C 0.111 3.889 14 O -0.235 6.235 15 C -0.415 4.415 16 H 0.100 0.900 17 C -0.025 4.025 18 N -0.923 5.923 19 Si 1.020 2.980 20 H -0.259 1.259 21 H -0.270 1.270 22 H -0.255 1.255 23 C -0.194 4.194 24 C -0.155 4.155 25 C -0.192 4.192 26 C -0.163 4.163 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.054 0.946 35 H 0.416 0.584 36 H 0.122 0.878 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.118 0.882 41 H 0.273 0.727 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.090 0.910 46 H 0.098 0.902 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.566 2.106 -21.872 28.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.034 4.034 3 C -0.205 4.205 4 C 0.010 3.990 5 N -0.367 5.367 6 C 0.300 3.700 7 O -0.461 6.461 8 C -0.131 4.131 9 C -0.026 4.026 10 C -0.199 4.199 11 C -0.092 4.092 12 C -0.267 4.267 13 C 0.061 3.939 14 O -0.142 6.142 15 C -0.491 4.491 16 H 0.117 0.883 17 C -0.222 4.222 18 N -0.561 5.561 19 Si 0.839 3.161 20 H -0.184 1.184 21 H -0.195 1.195 22 H -0.179 1.179 23 C -0.213 4.213 24 C -0.173 4.173 25 C -0.228 4.228 26 C -0.200 4.200 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.254 0.746 36 H 0.140 0.860 37 H 0.163 0.837 38 H 0.166 0.834 39 H 0.163 0.837 40 H 0.135 0.865 41 H 0.081 0.919 42 H 0.124 0.876 43 H 0.115 0.885 44 H 0.122 0.878 45 H 0.108 0.892 46 H 0.116 0.884 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.719 1.685 -21.840 27.556 hybrid contribution 0.831 -0.176 0.776 1.150 sum -15.888 1.509 -21.064 26.427 Atomic orbital electron populations 1.21857 0.92497 1.02341 1.02851 1.20194 0.96771 0.95281 0.91190 1.22045 1.01067 0.94453 1.02889 1.21297 0.98092 0.95832 0.83824 1.45867 1.54003 1.32429 1.04447 1.20946 0.79525 0.84034 0.85527 1.90756 1.39287 1.28636 1.87406 1.20712 1.04664 1.00191 0.87487 1.19208 0.92496 0.95920 0.94971 1.20984 1.02031 0.98632 0.98276 1.21141 0.94063 0.98605 0.95397 1.21296 0.98853 1.02008 1.04521 1.19891 0.86231 0.94012 0.93778 1.83934 1.31788 1.61538 1.36893 1.21789 1.10470 1.19230 0.97600 0.88263 1.26631 0.94890 0.97229 1.03470 1.70192 1.15233 1.29621 1.41047 0.84632 0.78381 0.78150 0.74921 1.18354 1.19452 1.17944 1.20228 0.98929 1.04246 0.97899 1.22212 1.04899 0.98809 0.91420 1.23234 0.92980 1.02682 1.03938 1.23001 0.97549 1.03376 0.96032 0.91537 0.91014 0.92826 0.92945 0.90850 0.91632 0.93708 0.92734 0.74573 0.86045 0.83716 0.83446 0.83686 0.86450 0.91851 0.87634 0.88466 0.87823 0.89185 0.88381 0.87698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.14 71.98 0.59 -0.70 16 2 C -0.03 -0.42 0.63 -52.18 -0.03 -0.45 16 3 C -0.15 -1.60 6.90 71.98 0.50 -1.11 16 4 C 0.13 2.59 4.55 86.38 0.39 2.98 16 5 N -0.71 -13.14 4.96 -463.07 -2.30 -15.43 16 6 C 0.51 14.08 7.82 87.66 0.69 14.77 16 7 O -0.58 -23.19 16.03 -3.04 -0.05 -23.24 16 8 C -0.09 -2.14 5.83 29.10 0.17 -1.97 16 9 C -0.03 -0.90 4.37 -19.88 -0.09 -0.99 16 10 C -0.18 -6.07 9.70 22.30 0.22 -5.85 16 11 C -0.07 -2.76 10.04 22.25 0.22 -2.54 16 12 C -0.25 -11.66 9.17 22.39 0.21 -11.46 16 13 C 0.11 5.96 6.65 22.58 0.15 6.11 16 14 O -0.23 -14.98 9.76 -22.71 -0.22 -15.20 16 15 C -0.41 -25.38 9.49 67.92 0.64 -24.74 16 16 H 0.10 5.59 5.20 -2.91 -0.02 5.58 16 17 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 18 N -0.92 -58.64 13.67 21.61 0.30 -58.34 16 19 Si 1.02 44.49 29.55 68.60 2.03 46.52 16 20 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 23 C -0.19 -8.95 9.65 22.39 0.22 -8.73 16 24 C -0.15 -2.00 5.14 -10.79 -0.06 -2.06 16 25 C -0.19 -2.35 9.57 30.62 0.29 -2.06 16 26 C -0.16 -1.61 9.39 30.62 0.29 -1.32 16 27 H 0.07 0.49 6.86 -2.39 -0.02 0.47 16 28 H 0.07 0.52 7.29 -2.39 -0.02 0.51 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.71 6.97 -2.38 -0.02 0.69 16 31 H 0.07 0.61 7.07 -2.39 -0.02 0.60 16 32 H 0.06 0.61 6.86 -2.38 -0.02 0.59 16 33 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.42 4.56 6.16 -92.70 -0.57 3.99 16 36 H 0.12 2.37 8.08 -2.39 -0.02 2.35 16 37 H 0.15 2.09 8.08 -2.39 -0.02 2.07 16 38 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 39 H 0.15 4.25 8.06 -2.91 -0.02 4.23 16 40 H 0.12 5.57 5.64 -2.91 -0.02 5.56 16 41 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 42 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16 43 H 0.10 1.42 8.11 -2.39 -0.02 1.40 16 44 H 0.10 1.22 5.85 -2.39 -0.01 1.21 16 45 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.10 0.82 7.07 -2.39 -0.02 0.80 16 Total: -1.00 -83.65 380.28 5.02 -78.63 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.41 Total: 28.21 kcal Atomic # 6 Polarization: -46.01 SS G_CDS: 4.86 Total: -41.15 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: -2.00 Total: -73.77 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -0.27 Total: -38.44 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -83.65 5.02 -78.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887375558.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.358 kcal (2) G-P(sol) polarization free energy of solvation -83.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds