Wall clock time and date at job start Tue Mar 31 2020 12:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47375 * 2 1 4 4 C 1.53004 * 109.46984 * 119.99810 * 2 1 3 5 5 H 1.08998 * 109.47891 * 60.01937 * 4 2 1 6 6 C 1.53087 * 109.48397 * 180.02562 * 4 2 1 7 7 C 1.53174 * 109.16844 * 177.59236 * 6 4 2 8 8 H 1.09002 * 109.54156 * 62.88420 * 7 6 4 9 9 C 1.50694 * 109.61765 * 183.10906 * 7 6 4 10 10 O 1.21273 * 120.00301 * 14.40825 * 9 7 6 11 11 N 1.34784 * 119.99562 * 194.40560 * 9 7 6 12 12 C 1.37132 * 120.00460 * 3.51190 * 11 9 7 13 13 H 1.08010 * 119.99771 * 23.23656 * 12 11 9 14 14 C 1.38888 * 120.00233 * 203.23688 * 12 11 9 15 15 N 1.31414 * 119.99951 * 10.23565 * 14 12 11 16 16 Si 1.86803 * 120.00007 * 190.22949 * 14 12 11 17 17 H 1.48503 * 109.46960 * 90.00294 * 16 14 12 18 18 H 1.48495 * 109.47082 * 210.00292 * 16 14 12 19 19 H 1.48505 * 109.47249 * 330.00240 * 16 14 12 20 20 C 1.39794 * 119.99357 * 183.51451 * 11 9 7 21 21 C 1.38962 * 120.07187 * 245.95582 * 20 11 9 22 22 C 1.38085 * 119.92083 * 179.79368 * 21 20 11 23 23 C 1.38312 * 120.07339 * 0.46601 * 22 21 20 24 24 C 1.38299 * 120.15924 * 359.78560 * 23 22 21 25 25 C 1.38087 * 120.07736 * 359.97438 * 24 23 22 26 26 C 1.53177 * 109.03394 * 303.01935 * 7 6 4 27 27 C 1.53094 * 109.16526 * 56.97963 * 26 7 6 28 28 O 1.42903 * 109.47812 * 300.00112 * 4 2 1 29 29 H 1.09000 * 109.47217 * 300.00736 * 1 2 3 30 30 H 1.09009 * 109.46880 * 60.00127 * 1 2 3 31 31 H 1.08994 * 109.47669 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46989 * 239.99765 * 2 1 3 33 33 H 1.09000 * 109.47254 * 59.99928 * 3 2 1 34 34 H 1.08995 * 109.47264 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46888 * 299.99643 * 3 2 1 36 36 H 1.09007 * 109.51906 * 297.50157 * 6 4 2 37 37 H 1.09006 * 109.51985 * 57.68153 * 6 4 2 38 38 H 0.97003 * 120.00028 * 184.98711 * 15 14 12 39 39 H 1.07995 * 120.04312 * 359.97438 * 21 20 11 40 40 H 1.07999 * 119.96609 * 180.25003 * 22 21 20 41 41 H 1.08002 * 119.91874 * 179.76750 * 23 22 21 42 42 H 1.08004 * 119.96097 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.04060 * 179.97438 * 25 24 23 44 44 H 1.08995 * 109.52433 * 297.07334 * 26 7 6 45 45 H 1.08998 * 109.57426 * 176.91234 * 26 7 6 46 46 H 1.08999 * 109.48450 * 182.40702 * 27 26 7 47 47 H 1.09003 * 109.49056 * 62.37858 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6770 -1.7490 1.2493 6 6 3.5708 -0.7209 1.2500 7 6 4.0734 -1.3910 2.5324 8 1 3.7511 -2.4322 2.5501 9 6 5.5783 -1.3282 2.5797 10 8 6.1781 -0.5863 1.8311 11 7 6.2576 -2.0967 3.4542 12 6 5.5850 -2.9879 4.2505 13 1 4.6152 -3.3558 3.9495 14 6 6.1510 -3.4173 5.4439 15 7 7.2280 -2.8264 5.9105 16 14 5.3811 -4.8349 6.3858 17 1 5.9792 -6.1153 5.9295 18 1 5.6350 -4.6599 7.8384 19 1 3.9170 -4.8566 6.1383 20 6 7.6478 -1.9851 3.5495 21 6 8.4591 -3.0492 3.1748 22 6 9.8321 -2.9341 3.2662 23 6 10.3996 -1.7648 3.7391 24 6 9.5950 -0.7056 4.1178 25 6 8.2214 -0.8120 4.0244 26 6 3.4914 -0.6538 3.7424 27 6 1.9635 -0.6568 3.6456 28 8 1.5637 -0.0477 2.4162 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6768 1.9562 -0.8900 36 1 3.9356 -1.2727 0.3835 37 1 3.9348 0.3058 1.2087 38 1 7.6651 -3.1715 6.7047 39 1 8.0165 -3.9642 2.8098 40 1 10.4634 -3.7592 2.9713 41 1 11.4736 -1.6788 3.8130 42 1 10.0416 0.2059 4.4871 43 1 7.5937 0.0154 4.3208 44 1 3.8538 0.3741 3.7515 45 1 3.7992 -1.1567 4.6591 46 1 1.5452 -0.0966 4.4818 47 1 1.5991 -1.6836 3.6774 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902983692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:28 Heat of formation + Delta-G solvation = -64.364441 kcal Electronic energy + Delta-G solvation = -27919.875549 eV Core-core repulsion = 24260.164778 eV Total energy + Delta-G solvation = -3659.710772 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.99597 -38.89234 -37.21491 -35.06807 -34.79386 -33.07231 -31.70208 -29.87815 -29.74708 -28.87114 -27.06152 -25.52441 -24.89507 -23.30950 -22.01442 -21.51523 -20.45627 -19.53014 -19.03054 -17.61694 -16.52403 -15.90437 -15.58749 -15.35952 -14.84750 -14.65519 -14.49041 -14.40662 -14.04835 -13.76523 -13.43757 -13.31916 -13.06638 -12.76208 -12.43167 -12.37339 -12.05332 -11.80381 -11.72229 -11.57314 -11.46600 -11.30447 -11.21145 -10.98231 -10.78788 -10.64816 -10.58403 -10.46913 -10.28611 -10.27321 -10.08342 -9.86295 -9.40007 -9.28755 -8.48111 -8.28215 -7.85273 -7.44626 -6.26918 -4.12904 2.46807 2.50676 3.04780 3.14123 3.16261 3.71428 3.98199 4.03663 4.48102 4.81704 4.92849 5.00646 5.09090 5.15258 5.31950 5.39717 5.45900 5.55928 5.63204 5.72714 5.77263 5.79935 5.86808 5.89912 5.91235 6.00808 6.02381 6.03622 6.11025 6.17853 6.29370 6.30927 6.39740 6.43991 6.48365 6.55746 6.57003 6.73525 6.81172 6.85105 7.04483 7.28036 7.35196 7.46260 7.53453 7.60878 7.75986 7.98968 8.39408 8.95256 9.32148 9.75009 10.58275 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014540 B = 0.004579 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.290903 B = 6113.200102 C = 7430.896086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.146 4.146 4 C 0.097 3.903 5 H 0.053 0.947 6 C -0.130 4.130 7 C -0.085 4.085 8 H 0.085 0.915 9 C 0.476 3.524 10 O -0.590 6.590 11 N -0.411 5.411 12 C -0.349 4.349 13 H 0.099 0.901 14 C 0.046 3.954 15 N -0.846 5.846 16 Si 0.916 3.084 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.269 1.269 20 C 0.243 3.757 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.153 4.153 24 C -0.117 4.117 25 C -0.087 4.087 26 C -0.140 4.140 27 C 0.066 3.934 28 O -0.379 6.379 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.272 0.728 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.066 0.934 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.052 1.753 -4.787 8.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.203 4.203 4 C 0.039 3.961 5 H 0.071 0.929 6 C -0.168 4.168 7 C -0.106 4.106 8 H 0.103 0.897 9 C 0.266 3.734 10 O -0.474 6.474 11 N -0.126 5.126 12 C -0.476 4.476 13 H 0.117 0.883 14 C -0.162 4.162 15 N -0.481 5.481 16 Si 0.742 3.258 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.193 1.193 20 C 0.152 3.848 21 C -0.142 4.142 22 C -0.138 4.138 23 C -0.171 4.171 24 C -0.136 4.136 25 C -0.106 4.106 26 C -0.178 4.178 27 C -0.011 4.011 28 O -0.298 6.298 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.085 0.915 45 H 0.112 0.888 46 H 0.108 0.892 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.792 2.305 -4.933 8.705 hybrid contribution 0.006 -1.310 0.930 1.607 sum -6.786 0.995 -4.002 7.941 Atomic orbital electron populations 1.21767 0.95024 1.01392 1.01808 1.21126 0.96046 0.97210 0.96082 1.21824 1.01537 0.95446 1.01517 1.22113 0.93271 0.95001 0.85733 0.92916 1.22097 0.94411 1.02988 0.97347 1.20986 0.93360 1.00662 0.95604 0.89711 1.20205 0.89119 0.81038 0.83015 1.90566 1.70457 1.41942 1.44445 1.41323 1.02849 1.34316 1.34144 1.19526 1.04814 1.23060 1.00163 0.88302 1.25278 0.96747 0.98122 0.96042 1.69882 1.18912 1.36673 1.22658 0.86095 0.79498 0.81264 0.78914 1.20260 1.20789 1.19338 1.17190 0.83269 0.92592 0.91785 1.20892 0.93087 0.98504 1.01733 1.20666 0.94361 0.97243 1.01534 1.20703 0.98246 0.94452 1.03735 1.20676 0.93466 0.98070 1.01406 1.20745 0.94193 0.97552 0.98132 1.22043 0.95060 1.01312 0.99349 1.22565 0.94445 0.97693 0.86408 1.87844 1.74535 1.53995 1.13452 0.91845 0.93144 0.93163 0.90415 0.91884 0.92094 0.93389 0.91350 0.89884 0.91703 0.87468 0.87702 0.87840 0.87655 0.87913 0.91536 0.88769 0.89159 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.05 37.16 0.34 -1.20 16 2 C -0.09 -1.05 2.81 -90.62 -0.25 -1.30 16 3 C -0.15 -1.81 8.70 37.16 0.32 -1.49 16 4 C 0.10 1.37 2.38 -26.68 -0.06 1.31 16 5 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 6 C -0.13 -2.19 3.88 -26.60 -0.10 -2.30 16 7 C -0.08 -1.60 1.83 -91.59 -0.17 -1.77 16 8 H 0.08 1.56 6.73 -51.93 -0.35 1.21 16 9 C 0.48 11.12 6.72 -10.99 -0.07 11.04 16 10 O -0.59 -15.22 15.62 5.56 0.09 -15.13 16 11 N -0.41 -10.03 2.69 -58.98 -0.16 -10.19 16 12 C -0.35 -8.31 7.73 -14.94 -0.12 -8.43 16 13 H 0.10 2.21 6.21 -52.48 -0.33 1.88 16 14 C 0.05 1.10 5.17 -17.49 -0.09 1.01 16 15 N -0.85 -21.47 10.70 55.49 0.59 -20.88 16 16 Si 0.92 18.76 29.57 -169.99 -5.03 13.73 16 17 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 18 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 20 C 0.24 5.99 2.59 -83.69 -0.22 5.77 16 21 C -0.12 -2.83 9.32 -39.37 -0.37 -3.20 16 22 C -0.12 -2.43 10.04 -39.61 -0.40 -2.83 16 23 C -0.15 -2.99 10.04 -39.53 -0.40 -3.39 16 24 C -0.12 -2.45 10.04 -39.61 -0.40 -2.84 16 25 C -0.09 -2.07 8.84 -39.37 -0.35 -2.41 16 26 C -0.14 -2.44 5.29 -26.59 -0.14 -2.58 16 27 C 0.07 0.95 6.84 37.21 0.25 1.20 16 28 O -0.38 -5.69 9.06 -35.23 -0.32 -6.01 16 29 H 0.06 0.73 7.68 -51.93 -0.40 0.33 16 30 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.83 7.68 -51.93 -0.40 0.43 16 34 H 0.06 0.83 6.38 -51.93 -0.33 0.49 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.08 1.52 6.02 -51.93 -0.31 1.21 16 38 H 0.27 6.70 8.32 -40.82 -0.34 6.36 16 39 H 0.11 2.44 8.06 -52.49 -0.42 2.01 16 40 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.11 1.89 8.06 -52.48 -0.42 1.46 16 43 H 0.10 2.51 8.06 -52.49 -0.42 2.09 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.09 1.78 7.01 -51.93 -0.36 1.41 16 46 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 369.82 15.07 5.57 5.57 Total: -1.00 -28.00 369.82 -9.01 -37.01 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -7.54 Total: 9.29 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -2.22 Total: -13.39 kcal Atomic # 7 Polarization: -31.50 SS G_CDS: 0.43 Total: -31.07 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.23 Total: -21.14 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.00 -9.01 -37.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902983692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.356 kcal (2) G-P(sol) polarization free energy of solvation -28.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds