Wall clock time and date at job start Tue Mar 31 2020 12:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47375 * 2 1 4 4 C 1.53004 * 109.46984 * 119.99810 * 2 1 3 5 5 H 1.08998 * 109.47891 * 60.01937 * 4 2 1 6 6 C 1.53087 * 109.48397 * 180.02562 * 4 2 1 7 7 C 1.53174 * 109.16844 * 177.59236 * 6 4 2 8 8 H 1.09002 * 109.54156 * 62.88420 * 7 6 4 9 9 C 1.50694 * 109.61765 * 183.10906 * 7 6 4 10 10 O 1.21273 * 120.00301 * 14.40825 * 9 7 6 11 11 N 1.34784 * 119.99562 * 194.40560 * 9 7 6 12 12 C 1.37132 * 120.00460 * 3.51190 * 11 9 7 13 13 H 1.08010 * 119.99771 * 23.23656 * 12 11 9 14 14 C 1.38888 * 120.00233 * 203.23688 * 12 11 9 15 15 N 1.31414 * 119.99951 * 10.23565 * 14 12 11 16 16 Si 1.86803 * 120.00007 * 190.22949 * 14 12 11 17 17 H 1.48503 * 109.46960 * 90.00294 * 16 14 12 18 18 H 1.48495 * 109.47082 * 210.00292 * 16 14 12 19 19 H 1.48505 * 109.47249 * 330.00240 * 16 14 12 20 20 C 1.39794 * 119.99357 * 183.51451 * 11 9 7 21 21 C 1.38962 * 120.07187 * 245.95582 * 20 11 9 22 22 C 1.38085 * 119.92083 * 179.79368 * 21 20 11 23 23 C 1.38312 * 120.07339 * 0.46601 * 22 21 20 24 24 C 1.38299 * 120.15924 * 359.78560 * 23 22 21 25 25 C 1.38087 * 120.07736 * 359.97438 * 24 23 22 26 26 C 1.53177 * 109.03394 * 303.01935 * 7 6 4 27 27 C 1.53094 * 109.16526 * 56.97963 * 26 7 6 28 28 O 1.42903 * 109.47812 * 300.00112 * 4 2 1 29 29 H 1.09000 * 109.47217 * 300.00736 * 1 2 3 30 30 H 1.09009 * 109.46880 * 60.00127 * 1 2 3 31 31 H 1.08994 * 109.47669 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46989 * 239.99765 * 2 1 3 33 33 H 1.09000 * 109.47254 * 59.99928 * 3 2 1 34 34 H 1.08995 * 109.47264 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46888 * 299.99643 * 3 2 1 36 36 H 1.09007 * 109.51906 * 297.50157 * 6 4 2 37 37 H 1.09006 * 109.51985 * 57.68153 * 6 4 2 38 38 H 0.97003 * 120.00028 * 184.98711 * 15 14 12 39 39 H 1.07995 * 120.04312 * 359.97438 * 21 20 11 40 40 H 1.07999 * 119.96609 * 180.25003 * 22 21 20 41 41 H 1.08002 * 119.91874 * 179.76750 * 23 22 21 42 42 H 1.08004 * 119.96097 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.04060 * 179.97438 * 25 24 23 44 44 H 1.08995 * 109.52433 * 297.07334 * 26 7 6 45 45 H 1.08998 * 109.57426 * 176.91234 * 26 7 6 46 46 H 1.08999 * 109.48450 * 182.40702 * 27 26 7 47 47 H 1.09003 * 109.49056 * 62.37858 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6770 -1.7490 1.2493 6 6 3.5708 -0.7209 1.2500 7 6 4.0734 -1.3910 2.5324 8 1 3.7511 -2.4322 2.5501 9 6 5.5783 -1.3282 2.5797 10 8 6.1781 -0.5863 1.8311 11 7 6.2576 -2.0967 3.4542 12 6 5.5850 -2.9879 4.2505 13 1 4.6152 -3.3558 3.9495 14 6 6.1510 -3.4173 5.4439 15 7 7.2280 -2.8264 5.9105 16 14 5.3811 -4.8349 6.3858 17 1 5.9792 -6.1153 5.9295 18 1 5.6350 -4.6599 7.8384 19 1 3.9170 -4.8566 6.1383 20 6 7.6478 -1.9851 3.5495 21 6 8.4591 -3.0492 3.1748 22 6 9.8321 -2.9341 3.2662 23 6 10.3996 -1.7648 3.7391 24 6 9.5950 -0.7056 4.1178 25 6 8.2214 -0.8120 4.0244 26 6 3.4914 -0.6538 3.7424 27 6 1.9635 -0.6568 3.6456 28 8 1.5637 -0.0477 2.4162 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6768 1.9562 -0.8900 36 1 3.9356 -1.2727 0.3835 37 1 3.9348 0.3058 1.2087 38 1 7.6651 -3.1715 6.7047 39 1 8.0165 -3.9642 2.8098 40 1 10.4634 -3.7592 2.9713 41 1 11.4736 -1.6788 3.8130 42 1 10.0416 0.2059 4.4871 43 1 7.5937 0.0154 4.3208 44 1 3.8538 0.3741 3.7515 45 1 3.7992 -1.1567 4.6591 46 1 1.5452 -0.0966 4.4818 47 1 1.5991 -1.6836 3.6774 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902983692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:27 Heat of formation + Delta-G solvation = -77.492448 kcal Electronic energy + Delta-G solvation = -27920.444822 eV Core-core repulsion = 24260.164778 eV Total energy + Delta-G solvation = -3660.280045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.58899 -40.34612 -38.88656 -36.64299 -36.11218 -34.53070 -33.55354 -31.57740 -30.97777 -30.55713 -28.00896 -27.10444 -26.54985 -24.58150 -23.55811 -23.21946 -21.90804 -20.78959 -20.68566 -19.30591 -18.14486 -17.30095 -17.15431 -16.71912 -16.57201 -16.17442 -16.13198 -15.79979 -15.32356 -15.13797 -14.97673 -14.68761 -14.44564 -14.25296 -14.10943 -13.74851 -13.44697 -13.30025 -13.23466 -12.89257 -12.87222 -12.82418 -12.58855 -12.42930 -12.23784 -12.11250 -12.00184 -11.94221 -11.71901 -11.52056 -11.41170 -11.20520 -11.14920 -10.65175 -10.16302 -10.09822 -9.57180 -9.22348 -8.08644 -6.01336 0.76025 0.79379 1.40722 1.46557 1.56040 1.92888 2.27138 2.80719 2.91259 3.05793 3.31251 3.75282 3.87115 3.90927 4.01662 4.14069 4.19494 4.21963 4.26985 4.32756 4.38540 4.43258 4.50816 4.59824 4.73681 4.75886 4.80720 4.85233 4.87907 4.90138 4.93618 5.05436 5.09531 5.11858 5.16417 5.24151 5.26904 5.33627 5.34307 5.44014 5.53060 5.57914 5.66110 5.77313 5.83993 6.01299 6.25525 6.35086 6.57686 7.09684 7.49628 7.92091 8.75073 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014540 B = 0.004579 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.290903 B = 6113.200102 C = 7430.896086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 C -0.144 4.144 4 C 0.100 3.900 5 H 0.067 0.933 6 C -0.122 4.122 7 C -0.080 4.080 8 H 0.092 0.908 9 C 0.461 3.539 10 O -0.626 6.626 11 N -0.420 5.420 12 C -0.358 4.358 13 H 0.110 0.890 14 C 0.007 3.993 15 N -0.873 5.873 16 Si 0.980 3.020 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.253 1.253 20 C 0.217 3.783 21 C -0.147 4.147 22 C -0.116 4.116 23 C -0.147 4.147 24 C -0.118 4.118 25 C -0.116 4.116 26 C -0.131 4.131 27 C 0.072 3.928 28 O -0.383 6.383 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.040 0.960 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.268 0.732 39 H 0.100 0.900 40 H 0.140 0.860 41 H 0.147 0.853 42 H 0.133 0.867 43 H 0.078 0.922 44 H 0.045 0.955 45 H 0.077 0.923 46 H 0.111 0.889 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.893 0.621 -4.968 9.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 C -0.201 4.201 4 C 0.042 3.958 5 H 0.085 0.915 6 C -0.161 4.161 7 C -0.101 4.101 8 H 0.110 0.890 9 C 0.253 3.747 10 O -0.513 6.513 11 N -0.135 5.135 12 C -0.484 4.484 13 H 0.128 0.872 14 C -0.198 4.198 15 N -0.509 5.509 16 Si 0.804 3.196 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.176 1.176 20 C 0.126 3.874 21 C -0.167 4.167 22 C -0.134 4.134 23 C -0.165 4.165 24 C -0.137 4.137 25 C -0.136 4.136 26 C -0.170 4.170 27 C -0.005 4.005 28 O -0.302 6.302 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.119 0.881 40 H 0.158 0.842 41 H 0.165 0.835 42 H 0.151 0.849 43 H 0.096 0.904 44 H 0.064 0.936 45 H 0.096 0.904 46 H 0.129 0.871 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.649 1.170 -5.116 9.277 hybrid contribution 0.397 -0.910 0.971 1.389 sum -7.252 0.260 -4.145 8.357 Atomic orbital electron populations 1.21715 0.93386 1.02125 1.02172 1.21182 0.97336 0.96615 0.95335 1.21790 1.00249 0.96071 1.01972 1.22190 0.90946 0.96180 0.86467 0.91476 1.22039 0.96692 1.01252 0.96072 1.21013 0.90239 1.01487 0.97354 0.88961 1.21044 0.90991 0.80344 0.82346 1.90516 1.71639 1.43327 1.45781 1.41595 1.03301 1.34414 1.34176 1.19863 1.05318 1.22884 1.00364 0.87202 1.26061 0.97054 1.00104 0.96606 1.70045 1.20215 1.37800 1.22840 0.85112 0.79531 0.78006 0.76976 1.20359 1.21355 1.17614 1.17502 0.83704 0.93400 0.92797 1.21036 0.94569 0.97993 1.03084 1.21106 0.93533 0.98676 1.00078 1.21172 1.00295 0.93256 1.01806 1.21062 0.92370 0.99787 1.00483 1.20765 0.95612 0.97014 1.00210 1.21964 0.97638 0.99496 0.97876 1.22603 0.91682 0.99180 0.87032 1.87859 1.74139 1.54468 1.13722 0.92736 0.91544 0.92240 0.89267 0.92924 0.94055 0.91416 0.91638 0.92056 0.92187 0.88134 0.84194 0.83508 0.84887 0.90369 0.93585 0.90401 0.87078 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.05 71.98 0.65 -1.93 16 2 C -0.09 -1.96 2.81 -10.79 -0.03 -1.99 16 3 C -0.14 -3.48 8.70 71.98 0.63 -2.85 16 4 C 0.10 2.71 2.38 30.62 0.07 2.78 16 5 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 6 C -0.12 -4.19 3.88 30.68 0.12 -4.08 16 7 C -0.08 -3.09 1.83 -11.42 -0.02 -3.11 16 8 H 0.09 3.40 6.73 -2.39 -0.02 3.38 16 9 C 0.46 22.61 6.72 87.65 0.59 23.20 16 10 O -0.63 -34.22 15.62 -3.01 -0.05 -34.27 16 11 N -0.42 -21.37 2.69 -458.90 -1.24 -22.60 16 12 C -0.36 -17.38 7.73 84.02 0.65 -16.73 16 13 H 0.11 4.92 6.21 -2.91 -0.02 4.90 16 14 C 0.01 0.32 5.17 84.91 0.44 0.76 16 15 N -0.87 -45.22 10.70 21.65 0.23 -44.99 16 16 Si 0.98 38.25 29.57 68.60 2.03 40.28 16 17 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 18 H -0.29 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 20 C 0.22 11.09 2.59 38.22 0.10 11.19 16 21 C -0.15 -6.90 9.32 22.41 0.21 -6.69 16 22 C -0.12 -4.54 10.04 22.25 0.22 -4.31 16 23 C -0.15 -5.44 10.04 22.30 0.22 -5.21 16 24 C -0.12 -4.89 10.04 22.25 0.22 -4.67 16 25 C -0.12 -5.77 8.84 22.40 0.20 -5.57 16 26 C -0.13 -4.69 5.29 30.69 0.16 -4.53 16 27 C 0.07 1.97 6.84 72.01 0.49 2.47 16 28 O -0.38 -10.98 9.06 -148.98 -1.35 -12.32 16 29 H 0.05 1.13 7.68 -2.39 -0.02 1.11 16 30 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.05 1.37 7.68 -2.39 -0.02 1.35 16 34 H 0.04 1.15 6.38 -2.39 -0.02 1.13 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 36 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 37 H 0.06 2.37 6.02 -2.38 -0.01 2.35 16 38 H 0.27 13.42 8.32 -92.71 -0.77 12.65 16 39 H 0.10 4.70 8.06 -2.91 -0.02 4.67 16 40 H 0.14 4.42 8.06 -2.91 -0.02 4.39 16 41 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 42 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 43 H 0.08 4.11 8.06 -2.91 -0.02 4.09 16 44 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.08 3.02 7.01 -2.39 -0.02 3.00 16 46 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 47 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -63.18 369.82 5.50 -57.68 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: 0.94 Total: 37.51 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 4.93 Total: -21.29 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: -1.00 Total: -67.59 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -1.40 Total: -46.59 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -63.18 5.50 -57.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902983692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.811 kcal (2) G-P(sol) polarization free energy of solvation -63.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds