Wall clock time and date at job start Tue Mar 31 2020 12:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47208 * 2 1 4 4 C 1.52994 * 109.47322 * 119.99925 * 2 1 3 5 5 H 1.09002 * 109.48262 * 299.98131 * 4 2 1 6 6 C 1.53284 * 109.46202 * 179.97438 * 4 2 1 7 7 C 1.53177 * 109.06563 * 182.45046 * 6 4 2 8 8 H 1.09000 * 109.54572 * 176.84647 * 7 6 4 9 9 C 1.50703 * 109.54379 * 297.02756 * 7 6 4 10 10 O 1.21273 * 119.99571 * 63.94410 * 9 7 6 11 11 N 1.34767 * 119.99836 * 243.94813 * 9 7 6 12 12 C 1.37137 * 120.00105 * 183.33109 * 11 9 7 13 13 H 1.08000 * 120.00145 * 221.65841 * 12 11 9 14 14 C 1.38897 * 120.00217 * 41.64607 * 12 11 9 15 15 N 1.31424 * 119.99533 * 10.33505 * 14 12 11 16 16 Si 1.86796 * 120.00315 * 190.33038 * 14 12 11 17 17 H 1.48496 * 109.47271 * 270.00494 * 16 14 12 18 18 H 1.48503 * 109.47062 * 30.00407 * 16 14 12 19 19 H 1.48500 * 109.46987 * 150.00281 * 16 14 12 20 20 C 1.39792 * 120.00383 * 3.32172 * 11 9 7 21 21 C 1.38962 * 120.07785 * 308.54553 * 20 11 9 22 22 C 1.38079 * 119.91701 * 179.71698 * 21 20 11 23 23 C 1.38306 * 120.08170 * 0.55429 * 22 21 20 24 24 C 1.38306 * 120.15497 * 359.71691 * 23 22 21 25 25 C 1.38082 * 120.07797 * 0.02562 * 24 23 22 26 26 C 1.53179 * 109.11043 * 56.93715 * 7 6 4 27 27 C 1.53093 * 109.16458 * 302.97887 * 26 7 6 28 28 O 1.42903 * 109.41841 * 57.60579 * 27 26 7 29 29 H 1.09004 * 109.47147 * 300.00098 * 1 2 3 30 30 H 1.09005 * 109.47239 * 59.99768 * 1 2 3 31 31 H 1.09000 * 109.46951 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47313 * 240.00199 * 2 1 3 33 33 H 1.08994 * 109.47403 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.47210 * 300.00250 * 3 2 1 35 35 H 1.09004 * 109.47147 * 59.99901 * 3 2 1 36 36 H 1.09002 * 109.64272 * 62.52979 * 6 4 2 37 37 H 1.09003 * 109.49843 * 302.28573 * 6 4 2 38 38 H 0.96993 * 119.99749 * 174.80849 * 15 14 12 39 39 H 1.07995 * 120.03717 * 359.97438 * 21 20 11 40 40 H 1.08004 * 119.95753 * 180.29480 * 22 21 20 41 41 H 1.08006 * 119.92634 * 179.70203 * 23 22 21 42 42 H 1.08008 * 119.96285 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.04064 * 179.97438 * 25 24 23 44 44 H 1.09008 * 109.52249 * 62.88342 * 26 7 6 45 45 H 1.08999 * 109.52381 * 183.06819 * 26 7 6 46 46 H 1.09000 * 109.47704 * 177.59022 * 27 26 7 47 47 H 1.08998 * 109.47837 * 297.62048 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6771 -0.2073 2.1393 6 6 3.5728 -0.7216 1.2486 7 6 4.0735 -1.4984 2.4702 8 1 5.1619 -1.5515 2.4476 9 6 3.6288 -0.7993 3.7291 10 8 2.4471 -0.7027 3.9839 11 7 4.5444 -0.2814 4.5715 12 6 4.1438 0.2943 5.7500 13 1 4.6034 1.2119 6.0864 14 6 3.1468 -0.3026 6.5108 15 7 2.7301 -1.5133 6.2144 16 14 2.3984 0.6152 7.9554 17 1 3.1726 0.3160 9.1867 18 1 2.4383 2.0755 7.6882 19 1 0.9894 0.1840 8.1394 20 6 5.9026 -0.3311 4.2442 21 6 6.4853 -1.5360 3.8707 22 6 7.8258 -1.5802 3.5424 23 6 8.5910 -0.4293 3.5961 24 6 8.0156 0.7706 3.9729 25 6 6.6744 0.8232 4.2974 26 6 3.4906 -2.9145 2.4374 27 6 1.9627 -2.8282 2.3921 28 8 1.5635 -2.0685 1.2496 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.9396 0.3039 1.2936 37 1 3.9362 -1.1997 0.3389 38 1 2.0889 -1.9597 6.7892 39 1 5.8895 -2.4360 3.8332 40 1 8.2783 -2.5155 3.2474 41 1 9.6404 -0.4677 3.3434 42 1 8.6159 1.6675 4.0133 43 1 6.2258 1.7605 4.5919 44 1 3.8523 -3.4369 1.5517 45 1 3.7985 -3.4560 3.3319 46 1 1.5438 -3.8323 2.3255 47 1 1.5992 -2.3419 3.2973 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902983693.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:33 Heat of formation + Delta-G solvation = -43.474746 kcal Electronic energy + Delta-G solvation = -28783.885849 eV Core-core repulsion = 25125.080923 eV Total energy + Delta-G solvation = -3658.804927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.22929 -38.73545 -37.16485 -34.99192 -34.19731 -33.15251 -31.74823 -30.41768 -29.58244 -28.62030 -26.97650 -25.75781 -24.16047 -23.19790 -22.15833 -21.74667 -20.73871 -19.77154 -18.78555 -17.36306 -16.17834 -16.03620 -15.69664 -15.41478 -14.94629 -14.50916 -14.15060 -14.04248 -13.97030 -13.70234 -13.57001 -13.09115 -12.95794 -12.74357 -12.54541 -12.25154 -12.08492 -11.92556 -11.72740 -11.53776 -11.39679 -11.08401 -11.02987 -10.83193 -10.77778 -10.74441 -10.66708 -10.59815 -10.31529 -10.20526 -10.00498 -9.70437 -9.18553 -8.91034 -8.53773 -8.34735 -7.57747 -7.04763 -6.18834 -4.02665 1.90052 1.93412 3.23210 3.30723 3.32787 4.02651 4.16386 4.34581 4.47748 4.74083 5.07058 5.13915 5.23298 5.37942 5.40092 5.43603 5.47678 5.53692 5.58757 5.63438 5.68885 5.84661 5.88584 5.97033 5.97621 6.03128 6.09265 6.09940 6.13599 6.23079 6.25808 6.33657 6.43204 6.45680 6.50665 6.54740 6.55435 6.59671 6.69578 6.76941 6.90204 6.97382 7.00769 7.17344 7.43950 7.55252 7.94231 8.16678 8.89155 9.00760 9.50320 10.10792 10.87140 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009710 B = 0.006606 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.076129 B = 4237.495344 C = 5708.582538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 C -0.147 4.147 4 C 0.090 3.910 5 H 0.087 0.913 6 C -0.128 4.128 7 C -0.128 4.128 8 H 0.093 0.907 9 C 0.491 3.509 10 O -0.497 6.497 11 N -0.414 5.414 12 C -0.352 4.352 13 H 0.082 0.918 14 C 0.066 3.934 15 N -0.829 5.829 16 Si 0.919 3.081 17 H -0.281 1.281 18 H -0.271 1.271 19 H -0.283 1.283 20 C 0.182 3.818 21 C -0.152 4.152 22 C -0.107 4.107 23 C -0.160 4.160 24 C -0.105 4.105 25 C -0.142 4.142 26 C -0.128 4.128 27 C 0.051 3.949 28 O -0.386 6.386 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.265 0.735 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.121 0.879 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.737 0.695 -9.275 10.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.106 4.106 3 C -0.204 4.204 4 C 0.032 3.968 5 H 0.105 0.895 6 C -0.167 4.167 7 C -0.149 4.149 8 H 0.111 0.889 9 C 0.280 3.720 10 O -0.372 6.372 11 N -0.129 5.129 12 C -0.478 4.478 13 H 0.100 0.900 14 C -0.144 4.144 15 N -0.463 5.463 16 Si 0.746 3.254 17 H -0.207 1.207 18 H -0.196 1.196 19 H -0.209 1.209 20 C 0.087 3.913 21 C -0.172 4.172 22 C -0.126 4.126 23 C -0.179 4.179 24 C -0.124 4.124 25 C -0.162 4.162 26 C -0.167 4.167 27 C -0.025 4.025 28 O -0.306 6.306 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.139 0.861 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.139 0.861 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.687 0.549 -9.248 9.971 hybrid contribution 0.097 0.263 1.093 1.128 sum 3.784 0.813 -8.156 9.027 Atomic orbital electron populations 1.21731 0.95027 1.02137 1.00872 1.21081 0.96282 0.95506 0.97700 1.21855 1.01226 0.95577 1.01732 1.22305 0.92111 0.83835 0.98544 0.89544 1.22063 0.97314 1.00357 0.96928 1.21730 1.02230 0.96047 0.94941 0.88868 1.19768 0.86307 0.82561 0.83396 1.90415 1.16364 1.56649 1.73769 1.41227 1.00418 1.53852 1.17407 1.19073 1.23054 1.07945 0.97720 0.90002 1.25199 0.96792 0.95053 0.97392 1.69859 1.29121 1.11575 1.35701 0.86082 0.78532 0.79915 0.80866 1.20702 1.19603 1.20879 1.18295 0.86654 0.92334 0.94058 1.21290 0.94907 0.97058 1.03978 1.20884 0.93566 0.97945 1.00170 1.20881 0.99235 0.93204 1.04533 1.20895 0.94550 0.97521 0.99425 1.21115 0.94143 0.97898 1.03080 1.21887 0.97781 0.95410 1.01586 1.22801 0.93362 0.95198 0.91128 1.87711 1.74999 1.23453 1.44394 0.92828 0.93495 0.92024 0.91353 0.92385 0.92733 0.92354 0.91288 0.91655 0.92528 0.86054 0.86740 0.87032 0.86764 0.86130 0.92096 0.91038 0.90757 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.05 37.16 0.34 -1.68 16 2 C -0.09 -1.31 2.72 -90.62 -0.25 -1.56 16 3 C -0.15 -1.98 8.85 37.16 0.33 -1.65 16 4 C 0.09 1.65 1.94 -26.59 -0.05 1.59 16 5 H 0.09 1.90 5.85 -51.93 -0.30 1.60 16 6 C -0.13 -2.27 4.49 -26.49 -0.12 -2.39 16 7 C -0.13 -2.50 2.07 -91.59 -0.19 -2.69 16 8 H 0.09 1.74 4.10 -51.93 -0.21 1.53 16 9 C 0.49 11.73 5.44 -10.99 -0.06 11.67 16 10 O -0.50 -13.29 9.04 5.56 0.05 -13.24 16 11 N -0.41 -10.13 2.69 -58.98 -0.16 -10.29 16 12 C -0.35 -9.38 8.90 -14.93 -0.13 -9.52 16 13 H 0.08 2.11 7.38 -52.49 -0.39 1.73 16 14 C 0.07 1.78 4.65 -17.48 -0.08 1.70 16 15 N -0.83 -23.25 10.99 55.49 0.61 -22.64 16 16 Si 0.92 21.27 29.57 -169.99 -5.03 16.25 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.18 3.82 5.13 -83.69 -0.43 3.40 16 21 C -0.15 -2.83 7.18 -39.37 -0.28 -3.12 16 22 C -0.11 -1.65 10.04 -39.61 -0.40 -2.05 16 23 C -0.16 -2.31 10.04 -39.53 -0.40 -2.71 16 24 C -0.11 -1.62 10.04 -39.61 -0.40 -2.02 16 25 C -0.14 -2.65 9.45 -39.37 -0.37 -3.02 16 26 C -0.13 -2.38 5.49 -26.59 -0.15 -2.53 16 27 C 0.05 1.00 6.55 37.21 0.24 1.25 16 28 O -0.39 -7.46 9.73 -35.23 -0.34 -7.80 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.92 7.68 -51.93 -0.40 0.53 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.76 6.49 -51.93 -0.34 0.43 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.20 6.58 -51.93 -0.34 0.86 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.26 7.16 8.32 -40.82 -0.34 6.82 16 39 H 0.12 2.31 6.75 -52.49 -0.35 1.96 16 40 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 41 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 42 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 43 H 0.12 2.25 7.65 -52.48 -0.40 1.85 16 44 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 45 H 0.07 1.38 8.07 -51.93 -0.42 0.96 16 46 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 47 H 0.10 2.24 5.56 -51.93 -0.29 1.95 16 LS Contribution 359.11 15.07 5.41 5.41 Total: -1.00 -29.65 359.11 -9.08 -38.73 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -7.23 Total: 8.89 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -2.39 Total: -15.31 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.45 Total: -32.93 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.29 Total: -21.04 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.65 -9.08 -38.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902983693.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.745 kcal (2) G-P(sol) polarization free energy of solvation -29.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds