Wall clock time and date at job start Tue Mar 31 2020 12:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47208 * 2 1 4 4 C 1.52994 * 109.47322 * 119.99925 * 2 1 3 5 5 H 1.09002 * 109.48262 * 299.98131 * 4 2 1 6 6 C 1.53284 * 109.46202 * 179.97438 * 4 2 1 7 7 C 1.53177 * 109.06563 * 182.45046 * 6 4 2 8 8 H 1.09000 * 109.54572 * 176.84647 * 7 6 4 9 9 C 1.50703 * 109.54379 * 297.02756 * 7 6 4 10 10 O 1.21273 * 119.99571 * 63.94410 * 9 7 6 11 11 N 1.34767 * 119.99836 * 243.94813 * 9 7 6 12 12 C 1.37137 * 120.00105 * 183.33109 * 11 9 7 13 13 H 1.08000 * 120.00145 * 221.65841 * 12 11 9 14 14 C 1.38897 * 120.00217 * 41.64607 * 12 11 9 15 15 N 1.31424 * 119.99533 * 10.33505 * 14 12 11 16 16 Si 1.86796 * 120.00315 * 190.33038 * 14 12 11 17 17 H 1.48496 * 109.47271 * 270.00494 * 16 14 12 18 18 H 1.48503 * 109.47062 * 30.00407 * 16 14 12 19 19 H 1.48500 * 109.46987 * 150.00281 * 16 14 12 20 20 C 1.39792 * 120.00383 * 3.32172 * 11 9 7 21 21 C 1.38962 * 120.07785 * 308.54553 * 20 11 9 22 22 C 1.38079 * 119.91701 * 179.71698 * 21 20 11 23 23 C 1.38306 * 120.08170 * 0.55429 * 22 21 20 24 24 C 1.38306 * 120.15497 * 359.71691 * 23 22 21 25 25 C 1.38082 * 120.07797 * 0.02562 * 24 23 22 26 26 C 1.53179 * 109.11043 * 56.93715 * 7 6 4 27 27 C 1.53093 * 109.16458 * 302.97887 * 26 7 6 28 28 O 1.42903 * 109.41841 * 57.60579 * 27 26 7 29 29 H 1.09004 * 109.47147 * 300.00098 * 1 2 3 30 30 H 1.09005 * 109.47239 * 59.99768 * 1 2 3 31 31 H 1.09000 * 109.46951 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47313 * 240.00199 * 2 1 3 33 33 H 1.08994 * 109.47403 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.47210 * 300.00250 * 3 2 1 35 35 H 1.09004 * 109.47147 * 59.99901 * 3 2 1 36 36 H 1.09002 * 109.64272 * 62.52979 * 6 4 2 37 37 H 1.09003 * 109.49843 * 302.28573 * 6 4 2 38 38 H 0.96993 * 119.99749 * 174.80849 * 15 14 12 39 39 H 1.07995 * 120.03717 * 359.97438 * 21 20 11 40 40 H 1.08004 * 119.95753 * 180.29480 * 22 21 20 41 41 H 1.08006 * 119.92634 * 179.70203 * 23 22 21 42 42 H 1.08008 * 119.96285 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.04064 * 179.97438 * 25 24 23 44 44 H 1.09008 * 109.52249 * 62.88342 * 26 7 6 45 45 H 1.08999 * 109.52381 * 183.06819 * 26 7 6 46 46 H 1.09000 * 109.47704 * 177.59022 * 27 26 7 47 47 H 1.08998 * 109.47837 * 297.62048 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6771 -0.2073 2.1393 6 6 3.5728 -0.7216 1.2486 7 6 4.0735 -1.4984 2.4702 8 1 5.1619 -1.5515 2.4476 9 6 3.6288 -0.7993 3.7291 10 8 2.4471 -0.7027 3.9839 11 7 4.5444 -0.2814 4.5715 12 6 4.1438 0.2943 5.7500 13 1 4.6034 1.2119 6.0864 14 6 3.1468 -0.3026 6.5108 15 7 2.7301 -1.5133 6.2144 16 14 2.3984 0.6152 7.9554 17 1 3.1726 0.3160 9.1867 18 1 2.4383 2.0755 7.6882 19 1 0.9894 0.1840 8.1394 20 6 5.9026 -0.3311 4.2442 21 6 6.4853 -1.5360 3.8707 22 6 7.8258 -1.5802 3.5424 23 6 8.5910 -0.4293 3.5961 24 6 8.0156 0.7706 3.9729 25 6 6.6744 0.8232 4.2974 26 6 3.4906 -2.9145 2.4374 27 6 1.9627 -2.8282 2.3921 28 8 1.5635 -2.0685 1.2496 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.9396 0.3039 1.2936 37 1 3.9362 -1.1997 0.3389 38 1 2.0889 -1.9597 6.7892 39 1 5.8895 -2.4360 3.8332 40 1 8.2783 -2.5155 3.2474 41 1 9.6404 -0.4677 3.3434 42 1 8.6159 1.6675 4.0133 43 1 6.2258 1.7605 4.5919 44 1 3.8523 -3.4369 1.5517 45 1 3.7985 -3.4560 3.3319 46 1 1.5438 -3.8323 2.3255 47 1 1.5992 -2.3419 3.2973 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902983693.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:32 Heat of formation + Delta-G solvation = -58.929867 kcal Electronic energy + Delta-G solvation = -28784.556033 eV Core-core repulsion = 25125.080923 eV Total energy + Delta-G solvation = -3659.475111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.82441 -40.17432 -38.73763 -36.33611 -35.89292 -34.78314 -33.62028 -31.74747 -31.01000 -30.12881 -28.18801 -27.45791 -25.83191 -24.63505 -23.62981 -23.14073 -22.31496 -21.06970 -20.45747 -19.05847 -17.78236 -17.52026 -17.18404 -16.91157 -16.70615 -16.10312 -15.84003 -15.48254 -15.41721 -15.15048 -14.95072 -14.55377 -14.34362 -14.06892 -13.98567 -13.76684 -13.52284 -13.23772 -13.19759 -13.11421 -12.97151 -12.84616 -12.62472 -12.43339 -12.31854 -12.11870 -12.04385 -11.96956 -11.89944 -11.66933 -11.45918 -11.19525 -11.02934 -10.44886 -10.20610 -9.68733 -9.31240 -8.79375 -8.18606 -6.07802 0.55629 0.59523 1.33626 1.39026 1.46547 2.21924 2.45236 2.89369 3.02488 3.06137 3.19086 3.73208 3.84975 3.92893 4.02144 4.13562 4.19055 4.21727 4.23984 4.33171 4.39376 4.47997 4.53352 4.67137 4.69797 4.71735 4.78057 4.78970 4.81826 4.91197 4.98750 5.00603 5.04331 5.05879 5.09866 5.16636 5.24789 5.25091 5.31353 5.41061 5.44039 5.49885 5.64205 5.72459 5.77727 6.10547 6.25996 6.40974 6.95403 7.14337 7.63337 8.30417 8.83857 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009710 B = 0.006606 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.076129 B = 4237.495344 C = 5708.582538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.084 4.084 3 C -0.143 4.143 4 C 0.089 3.911 5 H 0.041 0.959 6 C -0.122 4.122 7 C -0.122 4.122 8 H 0.106 0.894 9 C 0.481 3.519 10 O -0.538 6.538 11 N -0.433 5.433 12 C -0.365 4.365 13 H 0.078 0.922 14 C 0.016 3.984 15 N -0.859 5.859 16 Si 0.976 3.024 17 H -0.267 1.267 18 H -0.267 1.267 19 H -0.291 1.291 20 C 0.142 3.858 21 C -0.164 4.164 22 C -0.099 4.099 23 C -0.142 4.142 24 C -0.097 4.097 25 C -0.158 4.158 26 C -0.121 4.121 27 C 0.054 3.946 28 O -0.386 6.386 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.258 0.742 39 H 0.108 0.892 40 H 0.150 0.850 41 H 0.156 0.844 42 H 0.149 0.851 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.055 0.945 46 H 0.096 0.904 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.732 0.807 -11.580 13.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.102 4.102 3 C -0.200 4.200 4 C 0.032 3.968 5 H 0.059 0.941 6 C -0.160 4.160 7 C -0.143 4.143 8 H 0.123 0.877 9 C 0.271 3.729 10 O -0.416 6.416 11 N -0.148 5.148 12 C -0.492 4.492 13 H 0.096 0.904 14 C -0.190 4.190 15 N -0.494 5.494 16 Si 0.801 3.199 17 H -0.192 1.192 18 H -0.191 1.191 19 H -0.217 1.217 20 C 0.048 3.952 21 C -0.184 4.184 22 C -0.117 4.117 23 C -0.160 4.160 24 C -0.116 4.116 25 C -0.179 4.179 26 C -0.159 4.159 27 C -0.022 4.022 28 O -0.306 6.306 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.068 0.932 39 H 0.126 0.874 40 H 0.168 0.832 41 H 0.174 0.826 42 H 0.166 0.834 43 H 0.125 0.875 44 H 0.113 0.887 45 H 0.074 0.926 46 H 0.114 0.886 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.737 0.675 -11.558 13.395 hybrid contribution -0.685 0.270 1.777 1.923 sum 6.052 0.945 -9.781 11.541 Atomic orbital electron populations 1.21710 0.94700 1.01663 1.01420 1.21120 0.96620 0.96082 0.96381 1.21838 1.01435 0.94574 1.02126 1.22302 0.92813 0.83199 0.98508 0.94144 1.22057 0.96572 1.00368 0.97036 1.21716 1.02935 0.96231 0.93415 0.87660 1.20544 0.85852 0.82072 0.84388 1.90405 1.18052 1.58194 1.74955 1.41353 1.02318 1.54149 1.17014 1.19297 1.23127 1.07947 0.98826 0.90388 1.26001 0.97317 0.95760 0.99935 1.69993 1.29839 1.12921 1.36632 0.85202 0.77263 0.78853 0.78575 1.19201 1.19135 1.21692 1.18560 0.85463 0.94250 0.96909 1.21272 0.96508 0.95664 1.04980 1.21281 0.91929 1.00036 0.98462 1.21407 1.01085 0.91939 1.01614 1.21278 0.93076 0.99578 0.97641 1.21188 0.95747 0.96758 1.04169 1.21848 0.96763 0.95004 1.02323 1.22669 0.94376 0.95665 0.89523 1.87705 1.75367 1.23821 1.43677 0.94636 0.90543 0.93022 0.89451 0.92023 0.89870 0.94370 0.91398 0.88729 0.93233 0.87392 0.83248 0.82630 0.83368 0.87506 0.88684 0.92589 0.88639 0.93309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.05 71.98 0.65 -3.23 16 2 C -0.08 -2.43 2.72 -10.79 -0.03 -2.46 16 3 C -0.14 -3.69 8.85 71.98 0.64 -3.05 16 4 C 0.09 3.35 1.94 30.69 0.06 3.41 16 5 H 0.04 1.92 5.85 -2.39 -0.01 1.90 16 6 C -0.12 -4.25 4.49 30.75 0.14 -4.12 16 7 C -0.12 -4.82 2.07 -11.42 -0.02 -4.84 16 8 H 0.11 3.89 4.10 -2.39 -0.01 3.88 16 9 C 0.48 24.29 5.44 87.66 0.48 24.77 16 10 O -0.54 -31.03 9.04 -3.01 -0.03 -31.06 16 11 N -0.43 -22.24 2.69 -458.90 -1.23 -23.48 16 12 C -0.37 -20.54 8.90 84.02 0.75 -19.80 16 13 H 0.08 4.26 7.38 -2.91 -0.02 4.24 16 14 C 0.02 0.92 4.65 84.91 0.39 1.32 16 15 N -0.86 -51.28 10.99 21.65 0.24 -51.04 16 16 Si 0.98 45.74 29.57 68.60 2.03 47.77 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 19 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 20 C 0.14 6.06 5.13 38.22 0.20 6.25 16 21 C -0.16 -5.99 7.18 22.41 0.16 -5.83 16 22 C -0.10 -2.69 10.04 22.25 0.22 -2.46 16 23 C -0.14 -3.41 10.04 22.30 0.22 -3.19 16 24 C -0.10 -2.67 10.04 22.25 0.22 -2.45 16 25 C -0.16 -5.86 9.45 22.41 0.21 -5.65 16 26 C -0.12 -4.52 5.49 30.69 0.17 -4.35 16 27 C 0.05 2.20 6.55 72.01 0.47 2.67 16 28 O -0.39 -15.07 9.73 -148.98 -1.45 -16.52 16 29 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.05 1.54 7.68 -2.39 -0.02 1.52 16 32 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.06 1.54 6.49 -2.39 -0.02 1.52 16 34 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 2.36 6.58 -2.39 -0.02 2.34 16 37 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 38 H 0.26 14.95 8.32 -92.71 -0.77 14.17 16 39 H 0.11 4.17 6.75 -2.91 -0.02 4.15 16 40 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 41 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 42 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 43 H 0.11 4.12 7.65 -2.91 -0.02 4.10 16 44 H 0.09 2.88 8.14 -2.38 -0.02 2.86 16 45 H 0.06 2.24 8.07 -2.39 -0.02 2.22 16 46 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 47 H 0.05 2.48 5.56 -2.39 -0.01 2.47 16 Total: -1.00 -70.72 359.11 5.44 -65.28 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: 0.95 Total: 32.06 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: 4.93 Total: -23.01 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: -1.00 Total: -74.52 kcal Atomic # 8 Polarization: -46.11 SS G_CDS: -1.48 Total: -47.58 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -70.72 5.44 -65.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902983693.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.347 kcal (2) G-P(sol) polarization free energy of solvation -70.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds