Wall clock time and date at job start Tue Mar 31 2020 12:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46869 * 2 1 4 4 C 1.52999 * 109.46820 * 119.99291 * 2 1 3 5 5 H 1.08997 * 109.49275 * 299.97361 * 4 2 1 6 6 C 1.53095 * 109.48099 * 179.97438 * 4 2 1 7 7 C 1.53180 * 109.16216 * 182.41077 * 6 4 2 8 8 H 1.08996 * 109.54504 * 297.11175 * 7 6 4 9 9 C 1.50698 * 109.53989 * 176.84805 * 7 6 4 10 10 O 1.21284 * 120.00375 * 335.39204 * 9 7 6 11 11 N 1.34780 * 120.00261 * 155.39805 * 9 7 6 12 12 C 1.37139 * 119.99652 * 5.08525 * 11 9 7 13 13 H 1.08006 * 120.00108 * 325.49590 * 12 11 9 14 14 C 1.38886 * 120.00201 * 145.49036 * 12 11 9 15 15 N 1.31419 * 120.00435 * 161.40012 * 14 12 11 16 16 Si 1.86801 * 119.99714 * 341.40292 * 14 12 11 17 17 H 1.48505 * 109.47302 * 86.11292 * 16 14 12 18 18 H 1.48503 * 109.47383 * 206.11562 * 16 14 12 19 19 H 1.48497 * 109.47133 * 326.11570 * 16 14 12 20 20 C 1.39786 * 120.00273 * 185.09253 * 11 9 7 21 21 C 1.38953 * 120.07639 * 301.60543 * 20 11 9 22 22 C 1.38089 * 119.92105 * 179.74482 * 21 20 11 23 23 C 1.38307 * 120.07404 * 0.53165 * 22 21 20 24 24 C 1.38303 * 120.15911 * 359.72419 * 23 22 21 25 25 C 1.38081 * 120.07788 * 0.02562 * 24 23 22 26 26 C 1.53175 * 109.03892 * 56.98042 * 7 6 4 27 27 C 1.53085 * 109.16162 * 303.01900 * 26 7 6 28 28 O 1.42905 * 109.48103 * 60.00298 * 4 2 1 29 29 H 1.08997 * 109.47565 * 300.00322 * 1 2 3 30 30 H 1.09001 * 109.46707 * 60.01152 * 1 2 3 31 31 H 1.09007 * 109.46804 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47565 * 239.99677 * 2 1 3 33 33 H 1.09002 * 109.46973 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46965 * 299.99129 * 3 2 1 35 35 H 1.08997 * 109.47291 * 59.99509 * 3 2 1 36 36 H 1.09003 * 109.51971 * 302.31762 * 6 4 2 37 37 H 1.08998 * 109.52205 * 62.50084 * 6 4 2 38 38 H 0.97000 * 119.99821 * 180.02562 * 15 14 12 39 39 H 1.08005 * 120.04064 * 0.02562 * 21 20 11 40 40 H 1.07994 * 119.96189 * 180.25521 * 22 21 20 41 41 H 1.08002 * 119.92112 * 179.74505 * 23 22 21 42 42 H 1.08004 * 119.96186 * 180.02562 * 24 23 22 43 43 H 1.08000 * 120.03992 * 179.97438 * 25 24 23 44 44 H 1.08997 * 109.52146 * 183.10910 * 26 7 6 45 45 H 1.09001 * 109.52340 * 62.92440 * 26 7 6 46 46 H 1.09004 * 109.48240 * 177.58943 * 27 26 7 47 47 H 1.08995 * 109.48330 * 297.61237 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6772 -0.2072 2.1395 6 6 3.5709 -0.7218 1.2493 7 6 4.0733 -1.4973 2.4711 8 1 3.7511 -0.9920 3.3815 9 6 5.5782 -1.5696 2.4382 10 8 6.1670 -1.4750 1.3821 11 7 6.2699 -1.7396 3.5824 12 6 5.6029 -1.9510 4.7618 13 1 4.6533 -1.4680 4.9393 14 6 6.1484 -2.7864 5.7280 15 7 5.7280 -2.7157 6.9712 16 14 7.4798 -4.0104 5.2606 17 1 8.8067 -3.3465 5.3231 18 1 7.4540 -5.1552 6.2062 19 1 7.2372 -4.5027 3.8808 20 6 7.6672 -1.7002 3.5669 21 6 8.3801 -2.5887 2.7713 22 6 9.7601 -2.5435 2.7544 23 6 10.4330 -1.6225 3.5367 24 6 9.7268 -0.7402 4.3338 25 6 8.3466 -0.7763 4.3517 26 6 3.4914 -2.9138 2.4378 27 6 1.9636 -2.8284 2.3920 28 8 1.5637 -2.0685 1.2497 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.9349 -1.1995 0.3397 37 1 3.9356 0.3043 1.2939 38 1 6.1093 -3.2989 7.6460 39 1 7.8554 -3.3109 2.1633 40 1 10.3148 -3.2311 2.1332 41 1 11.5125 -1.5921 3.5247 42 1 10.2555 -0.0220 4.9431 43 1 7.7957 -0.0873 4.9747 44 1 3.7993 -3.4551 3.3323 45 1 3.8538 -3.4358 1.5522 46 1 1.5452 -3.8327 2.3250 47 1 1.5993 -2.3425 3.2971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902983694.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:37 Heat of formation + Delta-G solvation = -59.834580 kcal Electronic energy + Delta-G solvation = -27937.594062 eV Core-core repulsion = 24278.079720 eV Total energy + Delta-G solvation = -3659.514342 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.22396 -39.15875 -37.57348 -35.25528 -34.97921 -33.18758 -32.15055 -30.33137 -29.81855 -29.22047 -27.16448 -25.52502 -24.84560 -23.42878 -22.21171 -21.95427 -20.43242 -19.98560 -18.89993 -17.85089 -16.56769 -16.17173 -15.94704 -15.62613 -15.42122 -14.70018 -14.35762 -14.20827 -14.16149 -13.75139 -13.63818 -13.32069 -13.18723 -12.95308 -12.81943 -12.65802 -12.38445 -12.24183 -12.14905 -12.10189 -11.39091 -11.20755 -11.08465 -10.97342 -10.94319 -10.81353 -10.64610 -10.64323 -10.55463 -10.15253 -10.08196 -9.84528 -9.39802 -9.33317 -8.71551 -8.50430 -8.27235 -7.61059 -6.59290 -4.23461 1.90110 2.00955 3.13728 3.25650 3.30658 3.52338 3.95155 4.10257 4.13804 4.39940 4.85146 4.89637 4.97383 5.19227 5.23581 5.35031 5.40592 5.45209 5.46934 5.51277 5.52883 5.64770 5.66699 5.71716 5.85153 5.86182 5.87597 5.96624 6.04027 6.05869 6.11734 6.17148 6.18764 6.27101 6.29922 6.36665 6.39047 6.48429 6.60984 6.63434 6.73429 6.92487 7.06508 7.14438 7.26420 7.51180 7.59917 7.90270 8.14444 8.77037 9.16027 9.46636 10.48622 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017172 B = 0.004441 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.138028 B = 6303.127937 C = 7132.108494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.149 4.149 4 C 0.098 3.902 5 H 0.056 0.944 6 C -0.132 4.132 7 C -0.087 4.087 8 H 0.094 0.906 9 C 0.494 3.506 10 O -0.575 6.575 11 N -0.424 5.424 12 C -0.353 4.353 13 H 0.112 0.888 14 C 0.080 3.920 15 N -0.855 5.855 16 Si 0.860 3.140 17 H -0.256 1.256 18 H -0.291 1.291 19 H -0.260 1.260 20 C 0.159 3.841 21 C -0.126 4.126 22 C -0.117 4.117 23 C -0.145 4.145 24 C -0.115 4.115 25 C -0.116 4.116 26 C -0.139 4.139 27 C 0.067 3.933 28 O -0.382 6.382 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.277 0.723 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.127 0.873 44 H 0.091 0.909 45 H 0.067 0.933 46 H 0.092 0.908 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.700 3.265 -7.150 8.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 C -0.206 4.206 4 C 0.040 3.960 5 H 0.074 0.926 6 C -0.170 4.170 7 C -0.108 4.108 8 H 0.112 0.888 9 C 0.285 3.715 10 O -0.457 6.457 11 N -0.139 5.139 12 C -0.478 4.478 13 H 0.130 0.870 14 C -0.129 4.129 15 N -0.489 5.489 16 Si 0.686 3.314 17 H -0.181 1.181 18 H -0.218 1.218 19 H -0.185 1.185 20 C 0.066 3.934 21 C -0.146 4.146 22 C -0.136 4.136 23 C -0.164 4.164 24 C -0.134 4.134 25 C -0.136 4.136 26 C -0.177 4.177 27 C -0.010 4.010 28 O -0.301 6.301 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.145 0.855 44 H 0.110 0.890 45 H 0.086 0.914 46 H 0.110 0.890 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.578 3.180 -7.600 8.982 hybrid contribution 0.927 -0.696 0.495 1.261 sum -2.650 2.484 -7.105 7.980 Atomic orbital electron populations 1.21763 0.94892 1.02246 1.01044 1.21074 0.96152 0.95656 0.97683 1.21881 1.01779 0.95195 1.01769 1.22122 0.93015 0.83208 0.97672 0.92644 1.22127 0.94873 1.00930 0.99063 1.21037 0.92521 0.97668 0.99583 0.88817 1.20539 0.89451 0.78742 0.82790 1.90576 1.71293 1.53729 1.30150 1.41544 1.01482 1.62711 1.08200 1.19088 1.07362 1.29479 0.91879 0.87050 1.25207 0.96815 0.96364 0.94506 1.69722 1.42067 1.36647 1.00471 0.87106 0.83463 0.81672 0.79118 1.18090 1.21846 1.18475 1.17806 0.84867 0.94328 0.96381 1.21175 0.94177 0.98673 1.00608 1.20858 0.93790 0.99213 0.99700 1.20930 0.99083 0.97560 0.98794 1.20900 0.93762 0.99353 0.99339 1.21150 0.94023 0.97974 1.00451 1.22032 0.95537 0.96233 1.03927 1.22549 0.94127 0.95929 0.88388 1.87842 1.74589 1.23379 1.44334 0.93023 0.93119 0.91889 0.90545 0.91884 0.92428 0.92575 0.90278 0.90990 0.91249 0.86332 0.86627 0.86813 0.86449 0.85480 0.89029 0.91440 0.89017 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.05 37.16 0.34 -1.20 16 2 C -0.09 -1.06 2.72 -90.62 -0.25 -1.30 16 3 C -0.15 -1.61 8.84 37.16 0.33 -1.28 16 4 C 0.10 1.39 2.22 -26.68 -0.06 1.33 16 5 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 6 C -0.13 -2.18 3.86 -26.59 -0.10 -2.28 16 7 C -0.09 -1.63 1.90 -91.59 -0.17 -1.81 16 8 H 0.09 1.77 6.50 -51.93 -0.34 1.44 16 9 C 0.49 11.15 6.61 -10.98 -0.07 11.08 16 10 O -0.58 -14.09 15.15 5.55 0.08 -14.01 16 11 N -0.42 -10.04 2.41 -58.98 -0.14 -10.19 16 12 C -0.35 -8.73 8.32 -14.94 -0.12 -8.86 16 13 H 0.11 2.81 6.51 -52.48 -0.34 2.47 16 14 C 0.08 2.06 5.27 -17.49 -0.09 1.96 16 15 N -0.86 -22.82 13.96 55.49 0.77 -22.04 16 16 Si 0.86 20.62 23.76 -169.99 -4.04 16.58 16 17 H -0.26 -6.13 6.53 56.52 0.37 -5.76 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.26 -6.29 6.21 56.52 0.35 -5.94 16 20 C 0.16 3.67 2.49 -83.70 -0.21 3.46 16 21 C -0.13 -2.78 5.67 -39.37 -0.22 -3.01 16 22 C -0.12 -2.21 9.89 -39.61 -0.39 -2.60 16 23 C -0.14 -2.54 10.04 -39.53 -0.40 -2.93 16 24 C -0.11 -2.11 10.04 -39.62 -0.40 -2.51 16 25 C -0.12 -2.48 8.82 -39.37 -0.35 -2.83 16 26 C -0.14 -2.43 5.34 -26.60 -0.14 -2.57 16 27 C 0.07 0.98 6.84 37.20 0.25 1.24 16 28 O -0.38 -5.84 9.73 -35.23 -0.34 -6.19 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.73 7.68 -51.93 -0.40 0.33 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.73 6.49 -51.93 -0.34 0.39 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 1.42 7.77 -51.93 -0.40 1.02 16 37 H 0.07 1.16 6.57 -51.93 -0.34 0.82 16 38 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.12 2.70 7.57 -52.48 -0.40 2.30 16 40 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 41 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 43 H 0.13 2.70 8.06 -52.49 -0.42 2.27 16 44 H 0.09 1.72 7.56 -51.93 -0.39 1.33 16 45 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 47 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 363.24 15.07 5.47 5.47 Total: -1.00 -28.69 363.24 -7.91 -36.60 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -7.66 Total: 7.86 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -2.06 Total: -14.09 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.63 Total: -32.23 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.26 Total: -20.19 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.04 Total: 16.58 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.69 -7.91 -36.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902983694.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.232 kcal (2) G-P(sol) polarization free energy of solvation -28.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds