Wall clock time and date at job start Tue Mar 31 2020 12:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46869 * 2 1 4 4 C 1.52999 * 109.46820 * 119.99291 * 2 1 3 5 5 H 1.08997 * 109.49275 * 299.97361 * 4 2 1 6 6 C 1.53095 * 109.48099 * 179.97438 * 4 2 1 7 7 C 1.53180 * 109.16216 * 182.41077 * 6 4 2 8 8 H 1.08996 * 109.54504 * 297.11175 * 7 6 4 9 9 C 1.50698 * 109.53989 * 176.84805 * 7 6 4 10 10 O 1.21284 * 120.00375 * 335.39204 * 9 7 6 11 11 N 1.34780 * 120.00261 * 155.39805 * 9 7 6 12 12 C 1.37139 * 119.99652 * 5.08525 * 11 9 7 13 13 H 1.08006 * 120.00108 * 325.49590 * 12 11 9 14 14 C 1.38886 * 120.00201 * 145.49036 * 12 11 9 15 15 N 1.31419 * 120.00435 * 161.40012 * 14 12 11 16 16 Si 1.86801 * 119.99714 * 341.40292 * 14 12 11 17 17 H 1.48505 * 109.47302 * 86.11292 * 16 14 12 18 18 H 1.48503 * 109.47383 * 206.11562 * 16 14 12 19 19 H 1.48497 * 109.47133 * 326.11570 * 16 14 12 20 20 C 1.39786 * 120.00273 * 185.09253 * 11 9 7 21 21 C 1.38953 * 120.07639 * 301.60543 * 20 11 9 22 22 C 1.38089 * 119.92105 * 179.74482 * 21 20 11 23 23 C 1.38307 * 120.07404 * 0.53165 * 22 21 20 24 24 C 1.38303 * 120.15911 * 359.72419 * 23 22 21 25 25 C 1.38081 * 120.07788 * 0.02562 * 24 23 22 26 26 C 1.53175 * 109.03892 * 56.98042 * 7 6 4 27 27 C 1.53085 * 109.16162 * 303.01900 * 26 7 6 28 28 O 1.42905 * 109.48103 * 60.00298 * 4 2 1 29 29 H 1.08997 * 109.47565 * 300.00322 * 1 2 3 30 30 H 1.09001 * 109.46707 * 60.01152 * 1 2 3 31 31 H 1.09007 * 109.46804 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47565 * 239.99677 * 2 1 3 33 33 H 1.09002 * 109.46973 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46965 * 299.99129 * 3 2 1 35 35 H 1.08997 * 109.47291 * 59.99509 * 3 2 1 36 36 H 1.09003 * 109.51971 * 302.31762 * 6 4 2 37 37 H 1.08998 * 109.52205 * 62.50084 * 6 4 2 38 38 H 0.97000 * 119.99821 * 180.02562 * 15 14 12 39 39 H 1.08005 * 120.04064 * 0.02562 * 21 20 11 40 40 H 1.07994 * 119.96189 * 180.25521 * 22 21 20 41 41 H 1.08002 * 119.92112 * 179.74505 * 23 22 21 42 42 H 1.08004 * 119.96186 * 180.02562 * 24 23 22 43 43 H 1.08000 * 120.03992 * 179.97438 * 25 24 23 44 44 H 1.08997 * 109.52146 * 183.10910 * 26 7 6 45 45 H 1.09001 * 109.52340 * 62.92440 * 26 7 6 46 46 H 1.09004 * 109.48240 * 177.58943 * 27 26 7 47 47 H 1.08995 * 109.48330 * 297.61237 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6772 -0.2072 2.1395 6 6 3.5709 -0.7218 1.2493 7 6 4.0733 -1.4973 2.4711 8 1 3.7511 -0.9920 3.3815 9 6 5.5782 -1.5696 2.4382 10 8 6.1670 -1.4750 1.3821 11 7 6.2699 -1.7396 3.5824 12 6 5.6029 -1.9510 4.7618 13 1 4.6533 -1.4680 4.9393 14 6 6.1484 -2.7864 5.7280 15 7 5.7280 -2.7157 6.9712 16 14 7.4798 -4.0104 5.2606 17 1 8.8067 -3.3465 5.3231 18 1 7.4540 -5.1552 6.2062 19 1 7.2372 -4.5027 3.8808 20 6 7.6672 -1.7002 3.5669 21 6 8.3801 -2.5887 2.7713 22 6 9.7601 -2.5435 2.7544 23 6 10.4330 -1.6225 3.5367 24 6 9.7268 -0.7402 4.3338 25 6 8.3466 -0.7763 4.3517 26 6 3.4914 -2.9138 2.4378 27 6 1.9636 -2.8284 2.3920 28 8 1.5637 -2.0685 1.2497 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.9349 -1.1995 0.3397 37 1 3.9356 0.3043 1.2939 38 1 6.1093 -3.2989 7.6460 39 1 7.8554 -3.3109 2.1633 40 1 10.3148 -3.2311 2.1332 41 1 11.5125 -1.5921 3.5247 42 1 10.2555 -0.0220 4.9431 43 1 7.7957 -0.0873 4.9747 44 1 3.7993 -3.4551 3.3323 45 1 3.8538 -3.4358 1.5522 46 1 1.5452 -3.8327 2.3250 47 1 1.5993 -2.3425 3.2971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902983694.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:36 Heat of formation + Delta-G solvation = -75.020012 kcal Electronic energy + Delta-G solvation = -27938.252552 eV Core-core repulsion = 24278.079720 eV Total energy + Delta-G solvation = -3660.172832 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.86131 -40.53064 -39.14888 -36.80631 -36.28946 -34.64197 -34.09563 -31.88076 -31.04667 -30.81064 -28.08595 -27.19908 -26.44482 -24.69610 -23.71250 -23.50809 -21.82839 -21.13370 -20.67941 -19.50978 -18.22712 -17.65598 -17.36921 -17.08177 -17.01140 -16.34591 -15.97516 -15.55067 -15.39777 -15.25704 -15.01316 -14.80597 -14.54280 -14.52290 -14.31738 -14.22704 -13.95301 -13.75004 -13.43040 -13.00015 -12.95476 -12.70770 -12.56858 -12.51650 -12.26986 -12.18850 -12.13958 -11.98077 -11.85650 -11.68740 -11.42141 -11.23724 -11.19154 -10.78983 -10.34709 -10.29107 -9.84634 -9.32242 -8.58615 -6.21849 0.33192 0.44196 1.21320 1.30076 1.36930 1.73569 2.17580 2.43458 2.75905 2.80722 3.01932 3.67989 3.76999 3.83531 3.94318 4.01253 4.06837 4.11934 4.16632 4.24085 4.31957 4.37590 4.43167 4.52319 4.53335 4.63374 4.66283 4.72693 4.77081 4.80764 4.84139 4.88308 5.02891 5.06154 5.08034 5.10065 5.15953 5.23425 5.29165 5.35733 5.45049 5.49325 5.51409 5.54407 5.59588 5.96129 5.98280 6.30009 6.30307 6.84055 7.27032 7.63005 8.52316 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017172 B = 0.004441 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.138028 B = 6303.127937 C = 7132.108494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 C -0.146 4.146 4 C 0.099 3.901 5 H 0.063 0.937 6 C -0.122 4.122 7 C -0.085 4.085 8 H 0.090 0.910 9 C 0.486 3.514 10 O -0.600 6.600 11 N -0.434 5.434 12 C -0.341 4.341 13 H 0.100 0.900 14 C 0.052 3.948 15 N -0.886 5.886 16 Si 0.903 3.097 17 H -0.252 1.252 18 H -0.293 1.293 19 H -0.272 1.272 20 C 0.125 3.875 21 C -0.149 4.149 22 C -0.118 4.118 23 C -0.133 4.133 24 C -0.110 4.110 25 C -0.137 4.137 26 C -0.134 4.134 27 C 0.072 3.928 28 O -0.386 6.386 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.280 0.720 39 H 0.098 0.902 40 H 0.149 0.851 41 H 0.162 0.838 42 H 0.155 0.845 43 H 0.117 0.883 44 H 0.073 0.927 45 H 0.056 0.944 46 H 0.115 0.885 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.820 3.891 -7.681 9.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.104 4.104 3 C -0.204 4.204 4 C 0.042 3.958 5 H 0.081 0.919 6 C -0.160 4.160 7 C -0.106 4.106 8 H 0.108 0.892 9 C 0.278 3.722 10 O -0.484 6.484 11 N -0.149 5.149 12 C -0.467 4.467 13 H 0.117 0.883 14 C -0.154 4.154 15 N -0.522 5.522 16 Si 0.729 3.271 17 H -0.176 1.176 18 H -0.221 1.221 19 H -0.197 1.197 20 C 0.033 3.967 21 C -0.169 4.169 22 C -0.137 4.137 23 C -0.151 4.151 24 C -0.129 4.129 25 C -0.157 4.157 26 C -0.172 4.172 27 C -0.004 4.004 28 O -0.305 6.305 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.116 0.884 40 H 0.166 0.834 41 H 0.180 0.820 42 H 0.173 0.827 43 H 0.135 0.865 44 H 0.092 0.908 45 H 0.075 0.925 46 H 0.133 0.867 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.687 3.809 -8.131 9.372 hybrid contribution 0.773 -0.833 0.587 1.279 sum -1.914 2.976 -7.544 8.333 Atomic orbital electron populations 1.21721 0.93434 1.02055 1.02236 1.21094 0.97313 0.96001 0.96023 1.21868 1.00939 0.94501 1.03057 1.22222 0.91084 0.83180 0.99336 0.91870 1.22061 0.96778 1.00266 0.96905 1.21088 0.90110 0.98904 1.00523 0.89153 1.21187 0.90939 0.77781 0.82249 1.90538 1.72191 1.54858 1.30799 1.41641 1.02291 1.63056 1.07962 1.18977 1.06978 1.28732 0.92004 0.88276 1.25534 0.98109 0.97260 0.94458 1.69762 1.43634 1.37800 1.01050 0.86441 0.82430 0.80286 0.77914 1.17606 1.22053 1.19747 1.18121 0.84572 0.95856 0.98131 1.21210 0.95830 0.98845 1.01054 1.21323 0.92567 0.99902 0.99880 1.21494 1.01449 0.95536 0.96580 1.21389 0.92527 0.99789 0.99160 1.21292 0.95712 0.98057 1.00664 1.21987 0.97850 0.94920 1.02463 1.22583 0.91736 0.97374 0.88745 1.87853 1.74308 1.23834 1.44543 0.92415 0.91366 0.92760 0.91304 0.93184 0.90583 0.91876 0.92084 0.90859 0.91036 0.88405 0.83352 0.82042 0.82706 0.86457 0.90797 0.92507 0.86712 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.05 71.98 0.65 -2.02 16 2 C -0.09 -1.98 2.72 -10.79 -0.03 -2.00 16 3 C -0.15 -2.95 8.84 71.98 0.64 -2.31 16 4 C 0.10 2.78 2.22 30.63 0.07 2.84 16 5 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 6 C -0.12 -4.12 3.86 30.69 0.12 -4.00 16 7 C -0.09 -3.31 1.90 -11.42 -0.02 -3.33 16 8 H 0.09 3.55 6.50 -2.39 -0.02 3.54 16 9 C 0.49 22.88 6.61 87.66 0.58 23.46 16 10 O -0.60 -30.56 15.15 -3.04 -0.05 -30.60 16 11 N -0.43 -21.25 2.41 -458.89 -1.10 -22.35 16 12 C -0.34 -17.44 8.32 84.02 0.70 -16.75 16 13 H 0.10 5.22 6.51 -2.91 -0.02 5.20 16 14 C 0.05 2.74 5.27 84.91 0.45 3.19 16 15 N -0.89 -48.14 13.96 21.65 0.30 -47.83 16 16 Si 0.90 43.20 23.76 68.60 1.63 44.83 16 17 H -0.25 -11.69 6.53 99.48 0.65 -11.04 16 18 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 19 H -0.27 -13.38 6.21 99.48 0.62 -12.76 16 20 C 0.13 5.84 2.49 38.22 0.10 5.94 16 21 C -0.15 -6.58 5.67 22.41 0.13 -6.45 16 22 C -0.12 -4.17 9.89 22.25 0.22 -3.95 16 23 C -0.13 -4.09 10.04 22.30 0.22 -3.86 16 24 C -0.11 -3.72 10.04 22.25 0.22 -3.50 16 25 C -0.14 -5.81 8.82 22.41 0.20 -5.61 16 26 C -0.13 -4.81 5.34 30.68 0.16 -4.65 16 27 C 0.07 2.08 6.84 72.01 0.49 2.57 16 28 O -0.39 -11.48 9.73 -148.98 -1.45 -12.93 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.05 1.16 7.68 -2.38 -0.02 1.14 16 32 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 1.13 6.49 -2.39 -0.02 1.12 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 2.27 7.77 -2.39 -0.02 2.25 16 37 H 0.07 2.42 6.57 -2.39 -0.02 2.41 16 38 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 39 H 0.10 4.61 7.57 -2.91 -0.02 4.59 16 40 H 0.15 4.15 8.06 -2.91 -0.02 4.12 16 41 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 42 H 0.16 3.99 8.06 -2.91 -0.02 3.97 16 43 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 44 H 0.07 2.90 7.56 -2.39 -0.02 2.88 16 45 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.11 2.79 8.14 -2.38 -0.02 2.77 16 47 H 0.06 1.65 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -63.63 363.24 5.02 -58.62 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.79 Total: 30.71 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 4.89 Total: -20.44 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -0.80 Total: -70.18 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -1.50 Total: -43.53 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.63 Total: 44.83 kcal Total: -63.63 5.02 -58.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902983694.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.405 kcal (2) G-P(sol) polarization free energy of solvation -63.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds