Wall clock time and date at job start Tue Mar 31 2020 12:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47037 * 2 1 4 4 C 1.50702 * 109.46608 * 240.00300 * 2 1 3 5 5 H 1.08004 * 119.99415 * 241.34487 * 4 2 1 6 6 C 1.37870 * 120.00169 * 61.34461 * 4 2 1 7 7 N 1.31515 * 120.00338 * 193.97463 * 6 4 2 8 8 Si 1.86804 * 120.00249 * 13.97561 * 6 4 2 9 9 H 1.48501 * 109.46997 * 84.54559 * 8 6 4 10 10 H 1.48495 * 109.47459 * 204.54503 * 8 6 4 11 11 H 1.48494 * 109.46891 * 324.55075 * 8 6 4 12 12 C 1.52994 * 109.47213 * 119.99987 * 2 1 3 13 13 N 1.46502 * 109.47466 * 300.00044 * 12 2 1 14 14 C 1.34772 * 120.00021 * 180.02562 * 13 12 2 15 15 O 1.21286 * 120.00296 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99816 * 179.97438 * 14 13 12 17 17 C 1.53006 * 109.46980 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.46901 * 180.02562 * 17 16 14 19 19 C 1.50706 * 109.47196 * 180.02562 * 18 17 16 20 20 O 1.21255 * 119.99751 * 0.02562 * 19 18 17 21 21 C 1.47162 * 119.99990 * 179.97438 * 19 18 17 22 22 C 1.39859 * 120.16639 * 180.02562 * 21 19 18 23 23 C 1.37889 * 119.82001 * 179.97438 * 22 21 19 24 24 C 1.38399 * 120.17424 * 359.97367 * 23 22 21 25 25 C 1.38406 * 120.34885 * 0.04674 * 24 23 22 26 26 C 1.37885 * 120.17409 * 359.95843 * 25 24 23 27 27 H 1.09008 * 109.46722 * 309.36615 * 1 2 3 28 28 H 1.08996 * 109.47553 * 69.36335 * 1 2 3 29 29 H 1.08998 * 109.47250 * 189.37337 * 1 2 3 30 30 H 1.08993 * 109.46904 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46832 * 300.00369 * 3 2 1 32 32 H 1.08996 * 109.47019 * 60.00399 * 3 2 1 33 33 H 0.96996 * 120.00738 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.47149 * 179.97438 * 12 2 1 35 35 H 1.08999 * 109.47100 * 60.00065 * 12 2 1 36 36 H 0.97004 * 119.99652 * 359.97438 * 13 12 2 37 37 H 1.09002 * 109.47305 * 60.00105 * 16 14 13 38 38 H 1.08999 * 109.47321 * 299.99919 * 16 14 13 39 39 H 1.09002 * 109.46731 * 60.00102 * 17 16 14 40 40 H 1.08999 * 109.47311 * 300.00273 * 17 16 14 41 41 H 1.08993 * 109.47617 * 60.00083 * 18 17 16 42 42 H 1.09005 * 109.46792 * 299.99770 * 18 17 16 43 43 H 1.07997 * 120.09290 * 359.70339 * 22 21 19 44 44 H 1.07997 * 119.90860 * 180.02562 * 23 22 21 45 45 H 1.08006 * 119.82580 * 179.97438 * 24 23 22 46 46 H 1.08000 * 119.91484 * 179.97438 * 25 24 23 47 47 H 1.08001 * 120.08769 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6351 -1.6010 -1.1316 6 6 1.7222 -0.2233 -2.4825 7 7 1.9155 -0.9725 -3.5460 8 14 1.0274 1.5007 -2.6684 9 1 2.1415 2.4817 -2.7084 10 1 0.2468 1.5866 -3.9287 11 1 0.1417 1.8043 -1.5158 12 6 2.0400 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8778 -0.4909 3.6695 15 8 2.5751 -1.4770 3.7807 16 6 1.3760 0.2198 4.8999 17 6 1.8860 -0.5015 6.1492 18 6 1.3759 0.2196 7.3984 19 6 1.8787 -0.4905 8.6289 20 8 2.5765 -1.4759 8.5176 21 6 1.5237 0.0126 9.9655 22 6 1.9889 -0.6433 11.1098 23 6 1.6523 -0.1654 12.3586 24 6 0.8569 0.9605 12.4815 25 6 0.3924 1.6150 11.3539 26 6 0.7200 1.1494 10.0980 27 1 -0.3633 0.6519 0.7946 28 1 -0.3634 0.3622 -0.9617 29 1 -0.3633 -1.0139 0.1674 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6977 -0.6297 -4.4269 34 1 3.1301 -0.7216 1.2489 35 1 1.6767 -1.7489 1.2492 36 1 0.9944 0.7582 2.3564 37 1 0.2860 0.2199 4.9004 38 1 1.7393 1.2475 4.8996 39 1 2.9760 -0.5019 6.1489 40 1 1.5223 -1.5291 6.1493 41 1 0.2860 0.2197 7.3984 42 1 1.7394 1.2473 7.3984 43 1 2.6063 -1.5244 11.0156 44 1 2.0110 -0.6706 13.2432 45 1 0.5964 1.3297 13.4625 46 1 -0.2282 2.4927 11.4579 47 1 0.3571 1.6615 9.2191 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909880752.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:47 Heat of formation + Delta-G solvation = -52.075906 kcal Electronic energy + Delta-G solvation = -25178.783503 eV Core-core repulsion = 21519.605602 eV Total energy + Delta-G solvation = -3659.177901 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.43153 -39.42536 -38.53010 -36.79414 -34.40552 -33.28086 -32.01425 -31.48859 -31.41311 -28.95105 -26.41757 -26.00536 -24.99942 -24.24872 -23.04593 -21.95742 -20.01376 -19.92295 -19.13310 -17.71017 -16.92918 -16.21966 -16.17723 -16.06229 -15.80291 -15.18475 -15.09397 -15.02085 -14.68469 -14.29204 -13.98506 -13.97106 -13.36935 -13.22738 -12.96332 -12.82469 -12.58925 -12.27646 -12.18709 -12.09650 -12.07958 -12.01887 -11.67538 -11.43075 -11.25693 -10.88325 -10.43997 -10.31609 -10.17954 -10.07480 -10.01138 -9.48517 -9.47134 -9.43286 -9.11079 -8.69462 -8.52491 -8.43382 -6.14887 -4.12160 0.25428 0.88956 2.08030 3.00841 3.22934 3.29739 3.36240 3.37739 3.47457 3.80467 4.31605 4.34818 4.45232 4.55490 4.64133 4.79894 4.81518 4.90590 4.96840 5.07964 5.15621 5.24850 5.32017 5.33509 5.47635 5.50572 5.58281 5.79340 5.83632 5.94644 5.98048 6.00616 6.04156 6.06654 6.27018 6.34506 6.39742 6.47948 6.52236 6.62777 6.68910 6.80323 6.97312 7.21922 7.24458 7.42518 7.71927 7.96545 8.44750 8.64701 8.90759 9.48825 10.98213 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.036772 B = 0.001885 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.261221 B =14852.471639 C =15391.582595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.027 3.973 3 C -0.147 4.147 4 C -0.513 4.513 5 H 0.076 0.924 6 C 0.075 3.925 7 N -0.891 5.891 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.141 3.859 13 N -0.725 5.725 14 C 0.502 3.498 15 O -0.546 6.546 16 C -0.142 4.142 17 C -0.095 4.095 18 C -0.166 4.166 19 C 0.392 3.608 20 O -0.443 6.443 21 C -0.168 4.168 22 C -0.064 4.064 23 C -0.133 4.133 24 C -0.092 4.092 25 C -0.134 4.134 26 C -0.074 4.074 27 H 0.021 0.979 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.029 0.971 33 H 0.264 0.736 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.396 0.604 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.133 0.867 44 H 0.128 0.872 45 H 0.126 0.874 46 H 0.129 0.871 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.926 9.242 30.432 32.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.026 3.974 3 C -0.204 4.204 4 C -0.551 4.551 5 H 0.094 0.906 6 C -0.128 4.128 7 N -0.527 5.527 8 Si 0.719 3.281 9 H -0.214 1.214 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.019 3.981 13 N -0.376 5.376 14 C 0.288 3.712 15 O -0.424 6.424 16 C -0.182 4.182 17 C -0.133 4.133 18 C -0.204 4.204 19 C 0.269 3.731 20 O -0.317 6.317 21 C -0.169 4.169 22 C -0.082 4.082 23 C -0.151 4.151 24 C -0.110 4.110 25 C -0.152 4.152 26 C -0.092 4.092 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.230 0.770 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.151 0.849 44 H 0.146 0.854 45 H 0.144 0.856 46 H 0.147 0.853 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.051 7.958 30.214 31.650 hybrid contribution -0.683 1.522 -0.321 1.699 sum -5.734 9.480 29.893 31.880 Atomic orbital electron populations 1.22289 0.97848 0.99813 0.99907 1.18730 0.92514 0.92265 0.93878 1.22352 1.01191 0.98316 0.98516 1.20723 1.34025 1.12315 0.87998 0.90567 1.24982 0.94707 0.97313 0.95798 1.69950 1.48188 1.35897 0.98709 0.87286 0.79310 0.85575 0.75962 1.21388 1.23409 1.17546 1.21488 0.98574 0.95813 0.82234 1.46339 1.53068 1.31888 1.06283 1.20569 0.80823 0.84949 0.84862 1.90708 1.38193 1.26556 1.86937 1.21681 1.02425 1.00700 0.93376 1.21136 1.02345 0.99686 0.90169 1.22080 1.03021 1.01401 0.93853 1.22541 0.77478 0.83430 0.89624 1.90567 1.29086 1.22988 1.89079 1.20639 1.02546 0.98553 0.95149 1.21496 0.96502 0.98600 0.91587 1.21192 0.99241 0.97196 0.97507 1.21452 0.95732 0.94799 0.99013 1.21181 1.00988 1.00661 0.92375 1.21505 0.95109 0.94364 0.98212 0.95957 0.92560 0.93426 0.92815 0.94074 0.95181 0.92568 0.92079 0.91976 0.76992 0.89099 0.89116 0.90484 0.90479 0.88173 0.88188 0.84863 0.85396 0.85595 0.85327 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 7.53 37.16 0.28 -2.56 16 2 C 0.03 0.59 0.50 -155.66 -0.08 0.52 16 3 C -0.15 -2.94 7.52 37.16 0.28 -2.66 16 4 C -0.51 -13.81 8.62 -34.44 -0.30 -14.10 16 5 H 0.08 2.26 7.99 -52.48 -0.42 1.85 16 6 C 0.07 2.07 5.32 -17.82 -0.09 1.98 16 7 N -0.89 -26.67 13.96 55.43 0.77 -25.89 16 8 Si 0.89 20.99 22.79 -169.99 -3.87 17.12 16 9 H -0.29 -6.76 7.10 56.52 0.40 -6.36 16 10 H -0.31 -7.41 7.11 56.52 0.40 -7.01 16 11 H -0.25 -5.34 4.65 56.52 0.26 -5.08 16 12 C 0.14 2.85 4.49 -4.04 -0.02 2.83 16 13 N -0.72 -11.61 5.00 -60.30 -0.30 -11.91 16 14 C 0.50 7.96 7.83 -10.99 -0.09 7.87 16 15 O -0.55 -11.15 15.98 5.55 0.09 -11.07 16 16 C -0.14 -1.46 5.70 -27.88 -0.16 -1.62 16 17 C -0.10 -1.06 3.79 -26.73 -0.10 -1.16 16 18 C -0.17 -1.24 4.31 -27.88 -0.12 -1.36 16 19 C 0.39 3.89 7.12 -30.68 -0.22 3.67 16 20 O -0.44 -6.11 15.98 5.58 0.09 -6.02 16 21 C -0.17 -1.40 5.87 -105.07 -0.62 -2.01 16 22 C -0.06 -0.52 9.60 -39.10 -0.38 -0.90 16 23 C -0.13 -0.84 10.03 -39.65 -0.40 -1.23 16 24 C -0.09 -0.49 10.04 -39.46 -0.40 -0.88 16 25 C -0.13 -0.70 10.03 -39.65 -0.40 -1.10 16 26 C -0.07 -0.44 9.47 -39.11 -0.37 -0.81 16 27 H 0.02 0.36 7.13 -51.92 -0.37 -0.01 16 28 H 0.06 1.21 4.30 -51.93 -0.22 0.99 16 29 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.04 0.87 2.25 -51.93 -0.12 0.76 16 32 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.40 5.33 6.26 -40.82 -0.26 5.08 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.02 8.06 -51.93 -0.42 0.60 16 40 H 0.08 1.02 8.06 -51.93 -0.42 0.61 16 41 H 0.10 0.53 8.09 -51.93 -0.42 0.11 16 42 H 0.10 0.52 8.09 -51.93 -0.42 0.10 16 43 H 0.13 1.13 7.65 -52.49 -0.40 0.73 16 44 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 45 H 0.13 0.38 8.06 -52.48 -0.42 -0.04 16 46 H 0.13 0.39 8.06 -52.49 -0.42 -0.04 16 47 H 0.13 0.48 7.05 -52.49 -0.37 0.11 16 LS Contribution 373.44 15.07 5.63 5.63 Total: -1.00 -34.27 373.44 -8.03 -42.30 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -7.27 Total: 3.38 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -3.17 Total: -13.54 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.47 Total: -37.80 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: 0.18 Total: -17.08 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -3.87 Total: 17.12 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.27 -8.03 -42.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909880752.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.779 kcal (2) G-P(sol) polarization free energy of solvation -34.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds