Wall clock time and date at job start Tue Mar 31 2020 12:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47037 * 2 1 4 4 C 1.50702 * 109.46608 * 240.00300 * 2 1 3 5 5 H 1.08004 * 119.99415 * 241.34487 * 4 2 1 6 6 C 1.37870 * 120.00169 * 61.34461 * 4 2 1 7 7 N 1.31515 * 120.00338 * 193.97463 * 6 4 2 8 8 Si 1.86804 * 120.00249 * 13.97561 * 6 4 2 9 9 H 1.48501 * 109.46997 * 84.54559 * 8 6 4 10 10 H 1.48495 * 109.47459 * 204.54503 * 8 6 4 11 11 H 1.48494 * 109.46891 * 324.55075 * 8 6 4 12 12 C 1.52994 * 109.47213 * 119.99987 * 2 1 3 13 13 N 1.46502 * 109.47466 * 300.00044 * 12 2 1 14 14 C 1.34772 * 120.00021 * 180.02562 * 13 12 2 15 15 O 1.21286 * 120.00296 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99816 * 179.97438 * 14 13 12 17 17 C 1.53006 * 109.46980 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.46901 * 180.02562 * 17 16 14 19 19 C 1.50706 * 109.47196 * 180.02562 * 18 17 16 20 20 O 1.21255 * 119.99751 * 0.02562 * 19 18 17 21 21 C 1.47162 * 119.99990 * 179.97438 * 19 18 17 22 22 C 1.39859 * 120.16639 * 180.02562 * 21 19 18 23 23 C 1.37889 * 119.82001 * 179.97438 * 22 21 19 24 24 C 1.38399 * 120.17424 * 359.97367 * 23 22 21 25 25 C 1.38406 * 120.34885 * 0.04674 * 24 23 22 26 26 C 1.37885 * 120.17409 * 359.95843 * 25 24 23 27 27 H 1.09008 * 109.46722 * 309.36615 * 1 2 3 28 28 H 1.08996 * 109.47553 * 69.36335 * 1 2 3 29 29 H 1.08998 * 109.47250 * 189.37337 * 1 2 3 30 30 H 1.08993 * 109.46904 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46832 * 300.00369 * 3 2 1 32 32 H 1.08996 * 109.47019 * 60.00399 * 3 2 1 33 33 H 0.96996 * 120.00738 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.47149 * 179.97438 * 12 2 1 35 35 H 1.08999 * 109.47100 * 60.00065 * 12 2 1 36 36 H 0.97004 * 119.99652 * 359.97438 * 13 12 2 37 37 H 1.09002 * 109.47305 * 60.00105 * 16 14 13 38 38 H 1.08999 * 109.47321 * 299.99919 * 16 14 13 39 39 H 1.09002 * 109.46731 * 60.00102 * 17 16 14 40 40 H 1.08999 * 109.47311 * 300.00273 * 17 16 14 41 41 H 1.08993 * 109.47617 * 60.00083 * 18 17 16 42 42 H 1.09005 * 109.46792 * 299.99770 * 18 17 16 43 43 H 1.07997 * 120.09290 * 359.70339 * 22 21 19 44 44 H 1.07997 * 119.90860 * 180.02562 * 23 22 21 45 45 H 1.08006 * 119.82580 * 179.97438 * 24 23 22 46 46 H 1.08000 * 119.91484 * 179.97438 * 25 24 23 47 47 H 1.08001 * 120.08769 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6351 -1.6010 -1.1316 6 6 1.7222 -0.2233 -2.4825 7 7 1.9155 -0.9725 -3.5460 8 14 1.0274 1.5007 -2.6684 9 1 2.1415 2.4817 -2.7084 10 1 0.2468 1.5866 -3.9287 11 1 0.1417 1.8043 -1.5158 12 6 2.0400 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8778 -0.4909 3.6695 15 8 2.5751 -1.4770 3.7807 16 6 1.3760 0.2198 4.8999 17 6 1.8860 -0.5015 6.1492 18 6 1.3759 0.2196 7.3984 19 6 1.8787 -0.4905 8.6289 20 8 2.5765 -1.4759 8.5176 21 6 1.5237 0.0126 9.9655 22 6 1.9889 -0.6433 11.1098 23 6 1.6523 -0.1654 12.3586 24 6 0.8569 0.9605 12.4815 25 6 0.3924 1.6150 11.3539 26 6 0.7200 1.1494 10.0980 27 1 -0.3633 0.6519 0.7946 28 1 -0.3634 0.3622 -0.9617 29 1 -0.3633 -1.0139 0.1674 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6977 -0.6297 -4.4269 34 1 3.1301 -0.7216 1.2489 35 1 1.6767 -1.7489 1.2492 36 1 0.9944 0.7582 2.3564 37 1 0.2860 0.2199 4.9004 38 1 1.7393 1.2475 4.8996 39 1 2.9760 -0.5019 6.1489 40 1 1.5223 -1.5291 6.1493 41 1 0.2860 0.2197 7.3984 42 1 1.7394 1.2473 7.3984 43 1 2.6063 -1.5244 11.0156 44 1 2.0110 -0.6706 13.2432 45 1 0.5964 1.3297 13.4625 46 1 -0.2282 2.4927 11.4579 47 1 0.3571 1.6615 9.2191 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909880752.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:46 Heat of formation + Delta-G solvation = -75.479694 kcal Electronic energy + Delta-G solvation = -25179.798367 eV Core-core repulsion = 21519.605602 eV Total energy + Delta-G solvation = -3660.192765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.13167 -40.70642 -39.13691 -38.43284 -35.28544 -34.96339 -33.42552 -32.53641 -31.86012 -29.80426 -28.00508 -27.45933 -26.88010 -25.08239 -23.57514 -22.71471 -21.23609 -20.87717 -20.58621 -18.42389 -18.18746 -17.89782 -17.08654 -17.00411 -16.72603 -16.46840 -16.30466 -16.19402 -15.25199 -15.23281 -15.10165 -14.83014 -14.67941 -14.38256 -14.35298 -14.17701 -14.00129 -13.73504 -13.48555 -13.01076 -12.96358 -12.67195 -12.57588 -12.40382 -12.38766 -12.12947 -11.94171 -11.93997 -11.75222 -11.69035 -11.09534 -10.89195 -10.62869 -10.59956 -10.36354 -9.95776 -9.92380 -9.91191 -8.29785 -6.32099 -0.28198 0.45587 1.37000 1.39073 1.48348 1.52528 1.77302 2.35646 2.35999 2.89456 3.03931 3.06433 3.75846 3.91516 4.05083 4.09104 4.09410 4.10885 4.19994 4.26010 4.32894 4.43192 4.50850 4.51921 4.66738 4.70693 4.74986 4.79366 4.83053 4.86647 4.89083 4.96135 4.99577 5.07679 5.10664 5.19439 5.20305 5.37953 5.41765 5.47117 5.51501 5.53892 5.58266 5.73838 5.81663 5.99200 6.30594 6.58021 6.70235 6.75407 7.32658 7.42278 8.87632 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.036772 B = 0.001885 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.261221 B =14852.471639 C =15391.582595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.026 3.974 3 C -0.146 4.146 4 C -0.520 4.520 5 H 0.021 0.979 6 C 0.012 3.988 7 N -0.948 5.948 8 Si 0.949 3.051 9 H -0.282 1.282 10 H -0.316 1.316 11 H -0.198 1.198 12 C 0.156 3.844 13 N -0.711 5.711 14 C 0.495 3.505 15 O -0.603 6.603 16 C -0.125 4.125 17 C -0.095 4.095 18 C -0.155 4.155 19 C 0.389 3.611 20 O -0.503 6.503 21 C -0.192 4.192 22 C -0.090 4.090 23 C -0.143 4.143 24 C -0.090 4.090 25 C -0.136 4.136 26 C -0.067 4.067 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.037 0.963 30 H 0.043 0.957 31 H 0.035 0.965 32 H 0.080 0.920 33 H 0.264 0.736 34 H 0.035 0.965 35 H 0.033 0.967 36 H 0.415 0.585 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.112 0.888 44 H 0.141 0.859 45 H 0.152 0.848 46 H 0.159 0.841 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.327 14.564 33.312 37.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.025 3.975 3 C -0.202 4.202 4 C -0.559 4.559 5 H 0.040 0.960 6 C -0.185 4.185 7 N -0.587 5.587 8 Si 0.778 3.222 9 H -0.209 1.209 10 H -0.245 1.245 11 H -0.122 1.122 12 C 0.032 3.968 13 N -0.364 5.364 14 C 0.284 3.716 15 O -0.484 6.484 16 C -0.165 4.165 17 C -0.133 4.133 18 C -0.192 4.192 19 C 0.270 3.730 20 O -0.382 6.382 21 C -0.193 4.193 22 C -0.108 4.108 23 C -0.161 4.161 24 C -0.108 4.108 25 C -0.153 4.153 26 C -0.085 4.085 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.253 0.747 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.131 0.869 44 H 0.158 0.842 45 H 0.170 0.830 46 H 0.177 0.823 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -8.487 13.329 33.147 36.721 hybrid contribution 0.450 -0.274 -1.114 1.232 sum -8.037 13.055 32.033 35.512 Atomic orbital electron populations 1.22206 0.95755 1.00612 1.01097 1.18673 0.94019 0.93253 0.91567 1.22281 1.00833 0.96576 1.00557 1.21057 1.32952 1.11003 0.90856 0.96031 1.25946 0.95422 1.01991 0.95109 1.70127 1.50751 1.38435 0.99424 0.86275 0.79436 0.79409 0.77125 1.20906 1.24529 1.12183 1.20964 0.97008 0.94889 0.83977 1.46078 1.53169 1.32137 1.04994 1.21717 0.79498 0.84271 0.86116 1.90703 1.40703 1.29338 1.87686 1.21725 1.04570 1.01315 0.88856 1.21043 1.00395 0.98875 0.92988 1.22112 1.04939 1.01975 0.90168 1.23191 0.75923 0.82411 0.91428 1.90556 1.32049 1.25687 1.89861 1.20657 1.04389 1.00159 0.94066 1.21552 0.97461 0.98783 0.93041 1.21400 0.99619 0.97950 0.97085 1.21847 0.94449 0.93861 1.00637 1.21611 1.00620 1.01251 0.91840 1.21851 0.93664 0.93043 0.99935 0.90928 0.93616 0.94378 0.93800 0.94624 0.90159 0.92704 0.94623 0.94838 0.74707 0.85105 0.85048 0.93832 0.93870 0.84573 0.84559 0.86945 0.84158 0.83031 0.82324 0.81690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 7.53 71.98 0.54 -4.59 16 2 C 0.03 1.10 0.50 -52.93 -0.03 1.07 16 3 C -0.15 -5.28 7.52 71.98 0.54 -4.74 16 4 C -0.52 -29.13 8.62 25.60 0.22 -28.91 16 5 H 0.02 1.38 7.99 -2.91 -0.02 1.36 16 6 C 0.01 0.71 5.32 84.65 0.45 1.16 16 7 N -0.95 -59.42 13.96 21.44 0.30 -59.13 16 8 Si 0.95 42.30 22.79 68.60 1.56 43.86 16 9 H -0.28 -12.31 7.10 99.48 0.71 -11.60 16 10 H -0.32 -14.56 7.11 99.48 0.71 -13.85 16 11 H -0.20 -7.26 4.65 99.48 0.46 -6.80 16 12 C 0.16 6.33 4.49 86.38 0.39 6.72 16 13 N -0.71 -20.75 5.00 -463.07 -2.32 -23.07 16 14 C 0.50 14.82 7.83 87.66 0.69 15.51 16 15 O -0.60 -25.42 15.98 -3.05 -0.05 -25.47 16 16 C -0.13 -2.03 5.70 29.85 0.17 -1.86 16 17 C -0.09 -1.98 3.79 30.60 0.12 -1.87 16 18 C -0.16 -1.78 4.31 29.85 0.13 -1.65 16 19 C 0.39 7.58 7.12 28.03 0.20 7.78 16 20 O -0.50 -15.06 15.98 -2.95 -0.05 -15.11 16 21 C -0.19 -2.98 5.87 -20.15 -0.12 -3.10 16 22 C -0.09 -1.54 9.60 22.58 0.22 -1.32 16 23 C -0.14 -1.66 10.03 22.23 0.22 -1.44 16 24 C -0.09 -0.68 10.04 22.35 0.22 -0.46 16 25 C -0.14 -0.84 10.03 22.23 0.22 -0.62 16 26 C -0.07 -0.55 9.47 22.58 0.21 -0.33 16 27 H 0.07 1.95 7.13 -2.38 -0.02 1.93 16 28 H 0.05 1.78 4.30 -2.39 -0.01 1.77 16 29 H 0.04 1.45 8.12 -2.39 -0.02 1.43 16 30 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.04 1.34 2.25 -2.38 -0.01 1.34 16 32 H 0.08 2.10 6.86 -2.39 -0.02 2.09 16 33 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 34 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.41 8.75 6.26 -92.71 -0.58 8.17 16 37 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.04 1.19 8.06 -2.39 -0.02 1.17 16 40 H 0.04 1.18 8.06 -2.39 -0.02 1.16 16 41 H 0.14 0.65 8.09 -2.39 -0.02 0.63 16 42 H 0.14 0.65 8.09 -2.38 -0.02 0.63 16 43 H 0.11 2.24 7.65 -2.91 -0.02 2.22 16 44 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 45 H 0.15 0.32 8.06 -2.91 -0.02 0.30 16 46 H 0.16 0.05 8.06 -2.91 -0.02 0.02 16 47 H 0.17 0.19 7.05 -2.91 -0.02 0.17 16 Total: -1.00 -86.41 373.44 3.99 -82.42 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.15 Total: 15.11 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: 4.40 Total: -18.62 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -2.02 Total: -82.20 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -0.10 Total: -40.58 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.56 Total: 43.86 kcal Total: -86.41 3.99 -82.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909880752.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.941 kcal (2) G-P(sol) polarization free energy of solvation -86.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds