Wall clock time and date at job start Tue Mar 31 2020 11:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46778 * 2 1 4 4 C 1.53003 * 109.46756 * 174.99960 * 3 2 1 5 5 C 1.53002 * 109.47189 * 184.99826 * 4 3 2 6 6 N 1.46498 * 109.47231 * 294.99919 * 3 2 1 7 7 C 1.34773 * 120.00273 * 150.32448 * 6 3 2 8 8 O 1.21592 * 120.00548 * 178.28473 * 7 6 3 9 9 C 1.47539 * 119.99839 * 358.28720 * 7 6 3 10 10 C 1.39673 * 120.19538 * 316.56098 * 9 7 6 11 11 C 1.37819 * 119.91902 * 179.97438 * 10 9 7 12 12 C 1.38574 * 120.32295 * 359.97438 * 11 10 9 13 13 C 1.38017 * 120.40433 * 0.02562 * 12 11 10 14 14 C 1.38834 * 120.07416 * 0.02562 * 13 12 11 15 15 O 1.35516 * 120.16516 * 180.02562 * 14 13 12 16 16 C 1.34817 * 117.00157 * 6.03716 * 15 14 13 17 17 H 1.07998 * 119.99761 * 5.40655 * 16 15 14 18 18 C 1.38698 * 120.00048 * 185.41064 * 16 15 14 19 19 N 1.31524 * 119.99835 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99735 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47466 * 59.99813 * 20 18 16 22 22 H 1.48502 * 109.47047 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47281 * 299.99479 * 20 18 16 24 24 C 1.46505 * 119.99997 * 330.32216 * 6 3 2 25 25 C 1.52998 * 117.49655 * 196.69052 * 24 6 3 26 26 C 1.52998 * 117.49565 * 128.06780 * 24 6 3 27 27 H 1.08994 * 109.47445 * 299.99609 * 1 2 3 28 28 H 1.08996 * 109.47121 * 60.00444 * 1 2 3 29 29 H 1.09005 * 109.46894 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47451 * 240.00341 * 2 1 3 31 31 H 1.08992 * 109.47463 * 120.00221 * 2 1 3 32 32 H 1.08994 * 109.47058 * 55.00543 * 3 2 1 33 33 H 1.08994 * 109.47717 * 305.00197 * 4 3 2 34 34 H 1.09002 * 109.47183 * 65.00468 * 4 3 2 35 35 H 1.09008 * 109.46825 * 59.99950 * 5 4 3 36 36 H 1.08997 * 109.47670 * 179.97438 * 5 4 3 37 37 H 1.09003 * 109.46994 * 300.00491 * 5 4 3 38 38 H 1.08001 * 120.03669 * 359.94772 * 10 9 7 39 39 H 1.07996 * 119.84263 * 180.02562 * 11 10 9 40 40 H 1.08005 * 119.79742 * 179.72487 * 12 11 10 41 41 H 1.08000 * 119.96867 * 179.97438 * 13 12 11 42 42 H 0.97002 * 119.99336 * 180.02562 * 19 18 16 43 43 H 1.08997 * 115.54969 * 342.40073 * 24 6 3 44 44 H 1.09000 * 117.50247 * 359.97438 * 25 24 6 45 45 H 1.09002 * 117.49811 * 145.02779 * 25 24 6 46 46 H 1.09004 * 117.49953 * 214.98020 * 26 24 6 47 47 H 1.08998 * 117.50211 * 359.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5648 1.4444 0.1257 5 6 4.0645 2.8850 0.2511 6 7 1.6524 2.0975 -1.2518 7 6 1.4336 3.4271 -1.2771 8 8 1.1424 3.9757 -2.3224 9 6 1.5476 4.2172 -0.0363 10 6 1.0003 3.7364 1.1554 11 6 1.1105 4.4788 2.3113 12 6 1.7627 5.7014 2.2980 13 6 2.3084 6.1893 1.1279 14 6 2.2062 5.4556 -0.0463 15 8 2.7417 5.9327 -1.1961 16 6 3.4688 7.0646 -1.1093 17 1 3.6756 7.5007 -0.1431 18 6 3.9512 7.6691 -2.2606 19 7 3.6996 7.1377 -3.4371 20 14 4.9592 9.2371 -2.1401 21 1 6.1782 8.9811 -1.3316 22 1 5.3529 9.6784 -3.5023 23 1 4.1483 10.2982 -1.4906 24 6 1.5026 1.3072 -2.4762 25 6 1.4856 2.0623 -3.8068 26 6 0.1944 1.4537 -3.2560 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6054 1.9815 0.8418 33 1 3.8571 0.8801 1.0112 34 1 4.0029 0.9837 -0.7597 35 1 3.6263 3.3458 1.1365 36 1 5.1507 2.8864 0.3411 37 1 3.7722 3.4494 -0.6345 38 1 0.4911 2.7841 1.1710 39 1 0.6873 4.1057 3.2321 40 1 1.8403 6.2783 3.2078 41 1 2.8149 7.1432 1.1254 42 1 4.0373 7.5604 -4.2423 43 1 1.9721 0.3236 -2.4613 44 1 1.5855 3.1471 -3.7712 45 1 1.9441 1.5755 -4.6676 46 1 -0.1966 0.5666 -3.7544 47 1 -0.5550 2.1378 -2.8578 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920003006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:29 Heat of formation + Delta-G solvation = 16.836389 kcal Electronic energy + Delta-G solvation = -28795.206680 eV Core-core repulsion = 25139.017041 eV Total energy + Delta-G solvation = -3656.189639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.52814 -38.71957 -36.81566 -36.38227 -35.29898 -32.35682 -32.12069 -31.37436 -30.21403 -28.99524 -26.14599 -25.44913 -23.67030 -22.58105 -21.93111 -21.68672 -21.14253 -20.84533 -18.79209 -18.11785 -17.04737 -16.59780 -15.64079 -15.16953 -14.92349 -14.55991 -14.29623 -14.13701 -13.96729 -13.87193 -13.66795 -13.48381 -13.20172 -12.92222 -12.74754 -12.45562 -12.35357 -12.08274 -11.72180 -11.54765 -11.42327 -11.26907 -11.08349 -10.99389 -10.91000 -10.89556 -10.69801 -10.52477 -10.49416 -10.30279 -10.07221 -9.87539 -9.55176 -8.87392 -8.58705 -8.15637 -7.82914 -7.30207 -6.46230 -4.06339 1.76936 2.28687 3.11179 3.12721 3.15503 3.34216 3.52828 3.92655 4.33944 4.53696 4.72780 5.02243 5.04857 5.07371 5.10931 5.17065 5.25873 5.41546 5.45659 5.52053 5.56055 5.60648 5.62946 5.72668 5.77812 5.86170 5.95060 5.98575 6.00977 6.08053 6.13157 6.17266 6.21462 6.33436 6.37747 6.48101 6.54435 6.56410 6.65958 6.82662 6.91297 6.97890 7.03506 7.24169 7.26938 7.36520 7.67271 7.90707 8.01833 8.94943 9.02403 9.64471 10.68582 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.005377 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.321033 B = 5205.722270 C = 6246.558197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.130 4.130 3 C 0.115 3.885 4 C -0.130 4.130 5 C -0.154 4.154 6 N -0.580 5.580 7 C 0.575 3.425 8 O -0.506 6.506 9 C -0.209 4.209 10 C -0.054 4.054 11 C -0.224 4.224 12 C -0.055 4.055 13 C -0.235 4.235 14 C 0.191 3.809 15 O -0.142 6.142 16 C -0.400 4.400 17 H 0.092 0.908 18 C 0.045 3.955 19 N -0.840 5.840 20 Si 0.939 3.061 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 C 0.078 3.922 25 C -0.198 4.198 26 C -0.193 4.193 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.066 0.934 38 H 0.123 0.877 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.131 0.869 42 H 0.272 0.728 43 H 0.120 0.880 44 H 0.152 0.848 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.694 -12.290 8.168 15.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.167 4.167 3 C 0.012 3.988 4 C -0.169 4.169 5 C -0.211 4.211 6 N -0.313 5.313 7 C 0.366 3.634 8 O -0.382 6.382 9 C -0.214 4.214 10 C -0.072 4.072 11 C -0.243 4.243 12 C -0.074 4.074 13 C -0.254 4.254 14 C 0.133 3.867 15 O -0.042 6.042 16 C -0.476 4.476 17 H 0.110 0.890 18 C -0.162 4.162 19 N -0.472 5.472 20 Si 0.763 3.237 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.027 4.027 25 C -0.235 4.235 26 C -0.232 4.232 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.131 0.869 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.140 0.860 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.148 0.852 42 H 0.082 0.918 43 H 0.137 0.863 44 H 0.170 0.830 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.782 -11.999 7.076 14.205 hybrid contribution 0.581 0.698 0.179 0.925 sum -2.201 -11.302 7.255 13.609 Atomic orbital electron populations 1.21812 0.95446 1.01303 1.02639 1.21855 0.96586 0.95904 1.02394 1.21894 0.95096 0.93667 0.88102 1.21917 0.95316 0.98316 1.01340 1.21929 0.99996 0.95906 1.03304 1.47193 1.69451 1.06645 1.07991 1.18204 0.76015 0.80519 0.88712 1.90603 1.46346 1.70105 1.31127 1.18710 1.12562 0.96265 0.93861 1.20830 0.97285 0.97651 0.91409 1.20456 1.08645 0.97644 0.97570 1.20866 0.94829 0.94934 0.96772 1.21143 1.08852 1.02665 0.92779 1.19141 0.89872 0.90646 0.87084 1.84062 1.55856 1.38444 1.25802 1.21341 1.29630 1.01787 0.94836 0.89036 1.25334 0.97652 0.99047 0.94172 1.70079 1.41107 1.38366 0.97677 0.85818 0.79554 0.80242 0.78047 1.19428 1.20192 1.19393 1.21407 1.01286 0.96127 0.83839 1.24131 0.99229 1.05736 0.94395 1.23193 0.92314 1.02746 1.04928 0.92937 0.91619 0.93046 0.91517 0.91047 0.86861 0.91687 0.92290 0.92171 0.93585 0.91478 0.86004 0.87267 0.87260 0.85166 0.91817 0.86258 0.83046 0.90177 0.89461 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.72 37.16 0.36 -1.23 16 2 C -0.13 -1.35 4.99 -26.73 -0.13 -1.49 16 3 C 0.12 1.56 1.85 -67.93 -0.13 1.44 16 4 C -0.13 -1.80 5.61 -26.73 -0.15 -1.95 16 5 C -0.15 -2.66 8.13 37.16 0.30 -2.36 16 6 N -0.58 -9.73 2.33 -159.80 -0.37 -10.11 16 7 C 0.57 12.29 5.56 -12.47 -0.07 12.22 16 8 O -0.51 -12.92 12.13 -8.50 -0.10 -13.02 16 9 C -0.21 -4.37 2.99 -104.81 -0.31 -4.68 16 10 C -0.05 -0.91 6.99 -39.20 -0.27 -1.18 16 11 C -0.22 -3.56 10.02 -39.61 -0.40 -3.96 16 12 C -0.06 -0.95 10.03 -39.54 -0.40 -1.35 16 13 C -0.24 -4.91 9.12 -39.44 -0.36 -5.27 16 14 C 0.19 4.53 5.57 -38.60 -0.21 4.31 16 15 O -0.14 -4.03 8.64 -12.98 -0.11 -4.14 16 16 C -0.40 -11.05 9.44 30.90 0.29 -10.76 16 17 H 0.09 2.31 5.30 -52.49 -0.28 2.03 16 18 C 0.05 1.23 5.49 -17.51 -0.10 1.14 16 19 N -0.84 -24.88 13.67 55.48 0.76 -24.12 16 20 Si 0.94 20.37 29.55 -169.99 -5.02 15.35 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 24 C 0.08 1.21 4.91 -67.93 -0.33 0.87 16 25 C -0.20 -3.52 9.64 -26.73 -0.26 -3.78 16 26 C -0.19 -2.96 8.94 -26.73 -0.24 -3.20 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.79 5.97 -51.93 -0.31 0.48 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.68 6.17 -51.92 -0.32 0.36 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.11 1.56 3.17 -51.93 -0.16 1.39 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.04 6.69 -51.92 -0.35 0.70 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.44 5.43 -51.93 -0.28 1.16 16 38 H 0.12 1.75 6.11 -52.49 -0.32 1.43 16 39 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 40 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 41 H 0.13 2.72 5.72 -52.49 -0.30 2.42 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.12 1.54 6.37 -51.93 -0.33 1.20 16 44 H 0.15 3.47 4.98 -53.28 -0.27 3.21 16 45 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.09 1.60 7.80 -51.93 -0.40 1.19 16 LS Contribution 359.91 15.07 5.42 5.42 Total: -1.00 -31.66 359.91 -8.52 -40.18 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -6.69 Total: 11.64 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -2.40 Total: -21.20 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.39 Total: -34.23 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.22 Total: -17.17 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.66 -8.52 -40.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920003006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.020 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds