Wall clock time and date at job start Tue Mar 31 2020 11:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46778 * 2 1 4 4 C 1.53003 * 109.46756 * 174.99960 * 3 2 1 5 5 C 1.53002 * 109.47189 * 184.99826 * 4 3 2 6 6 N 1.46498 * 109.47231 * 294.99919 * 3 2 1 7 7 C 1.34773 * 120.00273 * 150.32448 * 6 3 2 8 8 O 1.21592 * 120.00548 * 178.28473 * 7 6 3 9 9 C 1.47539 * 119.99839 * 358.28720 * 7 6 3 10 10 C 1.39673 * 120.19538 * 316.56098 * 9 7 6 11 11 C 1.37819 * 119.91902 * 179.97438 * 10 9 7 12 12 C 1.38574 * 120.32295 * 359.97438 * 11 10 9 13 13 C 1.38017 * 120.40433 * 0.02562 * 12 11 10 14 14 C 1.38834 * 120.07416 * 0.02562 * 13 12 11 15 15 O 1.35516 * 120.16516 * 180.02562 * 14 13 12 16 16 C 1.34817 * 117.00157 * 6.03716 * 15 14 13 17 17 H 1.07998 * 119.99761 * 5.40655 * 16 15 14 18 18 C 1.38698 * 120.00048 * 185.41064 * 16 15 14 19 19 N 1.31524 * 119.99835 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99735 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47466 * 59.99813 * 20 18 16 22 22 H 1.48502 * 109.47047 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47281 * 299.99479 * 20 18 16 24 24 C 1.46505 * 119.99997 * 330.32216 * 6 3 2 25 25 C 1.52998 * 117.49655 * 196.69052 * 24 6 3 26 26 C 1.52998 * 117.49565 * 128.06780 * 24 6 3 27 27 H 1.08994 * 109.47445 * 299.99609 * 1 2 3 28 28 H 1.08996 * 109.47121 * 60.00444 * 1 2 3 29 29 H 1.09005 * 109.46894 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47451 * 240.00341 * 2 1 3 31 31 H 1.08992 * 109.47463 * 120.00221 * 2 1 3 32 32 H 1.08994 * 109.47058 * 55.00543 * 3 2 1 33 33 H 1.08994 * 109.47717 * 305.00197 * 4 3 2 34 34 H 1.09002 * 109.47183 * 65.00468 * 4 3 2 35 35 H 1.09008 * 109.46825 * 59.99950 * 5 4 3 36 36 H 1.08997 * 109.47670 * 179.97438 * 5 4 3 37 37 H 1.09003 * 109.46994 * 300.00491 * 5 4 3 38 38 H 1.08001 * 120.03669 * 359.94772 * 10 9 7 39 39 H 1.07996 * 119.84263 * 180.02562 * 11 10 9 40 40 H 1.08005 * 119.79742 * 179.72487 * 12 11 10 41 41 H 1.08000 * 119.96867 * 179.97438 * 13 12 11 42 42 H 0.97002 * 119.99336 * 180.02562 * 19 18 16 43 43 H 1.08997 * 115.54969 * 342.40073 * 24 6 3 44 44 H 1.09000 * 117.50247 * 359.97438 * 25 24 6 45 45 H 1.09002 * 117.49811 * 145.02779 * 25 24 6 46 46 H 1.09004 * 117.49953 * 214.98020 * 26 24 6 47 47 H 1.08998 * 117.50211 * 359.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5648 1.4444 0.1257 5 6 4.0645 2.8850 0.2511 6 7 1.6524 2.0975 -1.2518 7 6 1.4336 3.4271 -1.2771 8 8 1.1424 3.9757 -2.3224 9 6 1.5476 4.2172 -0.0363 10 6 1.0003 3.7364 1.1554 11 6 1.1105 4.4788 2.3113 12 6 1.7627 5.7014 2.2980 13 6 2.3084 6.1893 1.1279 14 6 2.2062 5.4556 -0.0463 15 8 2.7417 5.9327 -1.1961 16 6 3.4688 7.0646 -1.1093 17 1 3.6756 7.5007 -0.1431 18 6 3.9512 7.6691 -2.2606 19 7 3.6996 7.1377 -3.4371 20 14 4.9592 9.2371 -2.1401 21 1 6.1782 8.9811 -1.3316 22 1 5.3529 9.6784 -3.5023 23 1 4.1483 10.2982 -1.4906 24 6 1.5026 1.3072 -2.4762 25 6 1.4856 2.0623 -3.8068 26 6 0.1944 1.4537 -3.2560 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6054 1.9815 0.8418 33 1 3.8571 0.8801 1.0112 34 1 4.0029 0.9837 -0.7597 35 1 3.6263 3.3458 1.1365 36 1 5.1507 2.8864 0.3411 37 1 3.7722 3.4494 -0.6345 38 1 0.4911 2.7841 1.1710 39 1 0.6873 4.1057 3.2321 40 1 1.8403 6.2783 3.2078 41 1 2.8149 7.1432 1.1254 42 1 4.0373 7.5604 -4.2423 43 1 1.9721 0.3236 -2.4613 44 1 1.5855 3.1471 -3.7712 45 1 1.9441 1.5755 -4.6676 46 1 -0.1966 0.5666 -3.7544 47 1 -0.5550 2.1378 -2.8578 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920003006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:28 Heat of formation + Delta-G solvation = -2.003463 kcal Electronic energy + Delta-G solvation = -28796.023637 eV Core-core repulsion = 25139.017041 eV Total energy + Delta-G solvation = -3657.006597 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.00585 -40.35063 -38.33807 -37.93391 -36.66099 -34.32732 -33.20631 -32.73968 -31.67674 -30.60373 -27.42876 -27.27536 -25.14937 -23.98087 -23.28844 -22.85837 -22.60764 -22.10435 -20.28819 -19.90964 -18.47306 -18.21698 -17.04678 -16.73712 -16.52084 -16.14555 -15.81916 -15.51354 -15.36939 -15.22827 -15.03205 -14.79106 -14.70673 -14.46703 -14.12552 -13.87245 -13.61890 -13.55112 -13.19985 -13.09899 -12.69530 -12.61092 -12.50596 -12.47834 -12.33557 -12.23156 -12.14549 -11.80585 -11.75616 -11.46205 -11.41194 -11.23936 -11.13562 -10.80988 -10.19792 -9.68609 -9.22598 -8.97993 -8.45733 -6.15503 0.23123 0.73213 1.30489 1.42702 1.47626 1.86333 2.08690 2.14697 2.82932 3.03744 3.20091 3.43005 3.60342 3.78212 3.99094 4.02592 4.05864 4.08030 4.24333 4.26764 4.31697 4.42697 4.49582 4.56149 4.61529 4.64192 4.66455 4.76340 4.79393 4.95893 5.00572 5.04649 5.06729 5.07673 5.12891 5.14636 5.22844 5.24443 5.35691 5.43045 5.48052 5.54637 5.56502 5.62416 5.71515 5.95058 5.96829 6.17123 6.56866 6.95469 7.45581 7.80006 8.75344 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.005377 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.321033 B = 5205.722270 C = 6246.558197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C 0.109 3.891 4 C -0.124 4.124 5 C -0.148 4.148 6 N -0.570 5.570 7 C 0.563 3.437 8 O -0.564 6.564 9 C -0.216 4.216 10 C -0.050 4.050 11 C -0.192 4.192 12 C -0.048 4.048 13 C -0.253 4.253 14 C 0.156 3.844 15 O -0.204 6.204 16 C -0.418 4.418 17 H 0.103 0.897 18 C -0.021 4.021 19 N -0.911 5.911 20 Si 1.017 2.983 21 H -0.254 1.254 22 H -0.275 1.275 23 H -0.255 1.255 24 C 0.087 3.913 25 C -0.231 4.231 26 C -0.169 4.169 27 H 0.057 0.943 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.014 0.986 38 H 0.157 0.843 39 H 0.163 0.837 40 H 0.151 0.849 41 H 0.120 0.880 42 H 0.270 0.730 43 H 0.160 0.840 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.127 0.873 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.412 -15.549 12.648 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C 0.007 3.993 4 C -0.162 4.162 5 C -0.206 4.206 6 N -0.301 5.301 7 C 0.354 3.646 8 O -0.444 6.444 9 C -0.220 4.220 10 C -0.068 4.068 11 C -0.210 4.210 12 C -0.066 4.066 13 C -0.273 4.273 14 C 0.102 3.898 15 O -0.108 6.108 16 C -0.494 4.494 17 H 0.121 0.879 18 C -0.220 4.220 19 N -0.547 5.547 20 Si 0.836 3.164 21 H -0.178 1.178 22 H -0.199 1.199 23 H -0.180 1.180 24 C -0.017 4.017 25 C -0.269 4.269 26 C -0.207 4.207 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.132 0.868 33 H 0.123 0.877 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.174 0.826 39 H 0.181 0.819 40 H 0.169 0.831 41 H 0.138 0.862 42 H 0.079 0.921 43 H 0.177 0.823 44 H 0.112 0.888 45 H 0.118 0.882 46 H 0.145 0.855 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.517 -15.322 11.653 19.569 hybrid contribution 0.630 1.476 -0.896 1.838 sum -2.887 -13.847 10.758 17.770 Atomic orbital electron populations 1.21817 0.95224 1.02405 1.01821 1.21850 0.96638 0.93090 1.04295 1.22210 0.95045 0.95776 0.86238 1.21926 0.95309 0.95864 1.03142 1.21835 1.00167 0.97957 1.00597 1.47266 1.67658 1.05336 1.09819 1.18539 0.75714 0.82146 0.88214 1.90633 1.49092 1.71749 1.32925 1.19060 1.12109 0.95517 0.95327 1.21276 0.96274 0.99084 0.90184 1.21118 1.05131 0.95895 0.98832 1.21347 0.93013 0.95671 0.96556 1.21287 1.09950 1.02521 0.93516 1.19796 0.90884 0.92039 0.87097 1.84056 1.58753 1.39665 1.28320 1.21833 1.30056 1.01953 0.95557 0.87932 1.26650 0.99010 1.02889 0.93457 1.70279 1.44688 1.41120 0.98644 0.84685 0.78065 0.75401 0.78261 1.17840 1.19934 1.17962 1.21760 1.01316 0.96473 0.82127 1.23866 1.02833 1.02936 0.97233 1.23143 0.90870 1.02835 1.03870 0.92415 0.93850 0.91019 0.90806 0.87921 0.86757 0.87717 0.92420 0.92457 0.93471 0.96644 0.82557 0.81943 0.83110 0.86242 0.92146 0.82313 0.88756 0.88225 0.85525 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.72 71.98 0.70 -1.77 16 2 C -0.12 -1.89 4.99 30.60 0.15 -1.74 16 3 C 0.11 2.61 1.85 44.99 0.08 2.69 16 4 C -0.12 -3.08 5.61 30.60 0.17 -2.91 16 5 C -0.15 -5.15 8.13 71.98 0.59 -4.56 16 6 N -0.57 -19.03 2.33 -777.74 -1.81 -20.85 16 7 C 0.56 25.47 5.56 86.70 0.48 25.95 16 8 O -0.56 -31.89 12.13 9.18 0.11 -31.78 16 9 C -0.22 -9.22 2.99 -19.98 -0.06 -9.28 16 10 C -0.05 -1.56 6.99 22.52 0.16 -1.40 16 11 C -0.19 -5.10 10.02 22.25 0.22 -4.87 16 12 C -0.05 -1.48 10.03 22.30 0.22 -1.25 16 13 C -0.25 -10.75 9.12 22.36 0.20 -10.55 16 14 C 0.16 7.84 5.57 22.91 0.13 7.96 16 15 O -0.20 -12.76 8.64 -6.85 -0.06 -12.82 16 16 C -0.42 -25.10 9.44 67.93 0.64 -24.46 16 17 H 0.10 5.56 5.30 -2.91 -0.02 5.55 16 18 C -0.02 -1.27 5.49 84.85 0.47 -0.81 16 19 N -0.91 -59.49 13.67 21.62 0.30 -59.20 16 20 Si 1.02 44.52 29.55 68.60 2.03 46.55 16 21 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 24 C 0.09 2.65 4.91 44.99 0.22 2.87 16 25 C -0.23 -8.77 9.64 30.59 0.29 -8.48 16 26 C -0.17 -5.15 8.94 30.59 0.27 -4.88 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.04 0.89 5.97 -2.39 -0.01 0.88 16 29 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.07 1.09 6.17 -2.38 -0.01 1.08 16 31 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.12 2.68 3.17 -2.39 -0.01 2.67 16 33 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.95 6.69 -2.38 -0.02 1.93 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.01 0.67 5.43 -2.39 -0.01 0.66 16 38 H 0.16 3.77 6.11 -2.91 -0.02 3.75 16 39 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 40 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 41 H 0.12 5.21 5.72 -2.91 -0.02 5.19 16 42 H 0.27 16.26 8.31 -92.71 -0.77 15.49 16 43 H 0.16 3.57 6.37 -2.39 -0.02 3.55 16 44 H 0.09 4.89 4.98 -23.75 -0.12 4.77 16 45 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 46 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 47 H 0.06 2.36 7.80 -2.39 -0.02 2.34 16 Total: -1.00 -84.57 359.91 6.39 -78.18 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: 0.88 Total: 37.41 kcal Atomic # 6 Polarization: -42.44 SS G_CDS: 4.95 Total: -37.49 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -1.52 Total: -80.05 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: 0.05 Total: -44.60 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -84.57 6.39 -78.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920003006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.177 kcal (2) G-P(sol) polarization free energy of solvation -84.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds