Wall clock time and date at job start Tue Mar 31 2020 11:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46960 * 2 1 4 4 C 1.50701 * 109.47034 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99802 * 274.99645 * 4 3 2 6 6 C 1.33014 * 119.99992 * 95.27780 * 4 3 2 7 7 C 1.47072 * 120.00042 * 185.05498 * 6 4 3 8 8 O 1.21624 * 119.99628 * 5.30622 * 7 6 4 9 9 N 1.34770 * 119.99875 * 185.30283 * 7 6 4 10 10 C 1.39833 * 119.99777 * 175.56718 * 9 7 6 11 11 C 1.38956 * 120.04358 * 214.87712 * 10 9 7 12 12 C 1.38114 * 120.03249 * 179.74564 * 11 10 9 13 13 C 1.38216 * 120.13224 * 0.55796 * 12 11 10 14 14 C 1.38771 * 120.08626 * 359.70019 * 13 12 11 15 15 O 1.35896 * 120.02048 * 180.02562 * 14 13 12 16 16 C 1.42901 * 116.99972 * 0.02562 * 15 14 13 17 17 C 1.53007 * 109.47055 * 179.97438 * 16 15 14 18 18 C 1.50694 * 109.46971 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00228 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00046 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99942 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00169 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47148 * 60.00074 * 22 20 18 24 24 H 1.48497 * 109.47328 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47078 * 300.00464 * 22 20 18 26 26 C 1.38626 * 119.96024 * 0.02562 * 14 13 12 27 27 H 1.08997 * 109.47543 * 59.99771 * 1 2 3 28 28 H 1.09000 * 109.46810 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47079 * 299.99836 * 1 2 3 30 30 H 1.08998 * 109.47079 * 240.00164 * 2 1 3 31 31 H 1.08998 * 109.47541 * 119.99676 * 2 1 3 32 32 H 1.08998 * 109.47091 * 60.00171 * 3 2 1 33 33 H 1.09005 * 109.46962 * 299.99838 * 3 2 1 34 34 H 1.08995 * 109.47199 * 354.92694 * 5 4 3 35 35 H 1.09006 * 109.46776 * 114.92747 * 5 4 3 36 36 H 1.09002 * 109.47220 * 234.91817 * 5 4 3 37 37 H 1.08004 * 120.00522 * 5.04896 * 6 4 3 38 38 H 0.96998 * 120.00524 * 355.57449 * 9 7 6 39 39 H 1.07995 * 119.98588 * 0.02769 * 11 10 9 40 40 H 1.08003 * 119.93859 * 180.25453 * 12 11 10 41 41 H 1.07995 * 119.95931 * 179.71672 * 13 12 11 42 42 H 1.08993 * 109.47003 * 299.99966 * 16 15 14 43 43 H 1.09000 * 109.47257 * 60.00174 * 16 15 14 44 44 H 1.08993 * 109.46883 * 300.00251 * 17 16 15 45 45 H 1.09000 * 109.46821 * 60.00060 * 17 16 15 46 46 H 0.97001 * 120.00118 * 179.97438 * 21 20 18 47 47 H 1.08004 * 120.06057 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.3010 1.3287 1.2992 6 6 4.2115 1.5487 -1.1479 7 6 5.6780 1.4372 -1.1614 8 8 6.2755 1.1523 -0.1411 9 7 6.3595 1.6506 -2.3043 10 6 7.7578 1.6362 -2.2976 11 6 8.4664 2.4907 -3.1333 12 6 9.8474 2.4799 -3.1227 13 6 10.5281 1.6119 -2.2899 14 6 9.8257 0.7524 -1.4570 15 8 10.4963 -0.1001 -0.6384 16 6 11.9239 -0.0576 -0.6866 17 6 12.4981 -1.0796 0.2967 18 6 14.0035 -1.0351 0.2454 19 1 14.5010 -0.3466 -0.4215 20 6 14.7458 -1.8735 1.0499 21 7 14.1400 -2.7124 1.8616 22 14 16.6119 -1.8180 0.9868 23 1 17.0794 -0.4582 1.3577 24 1 17.1692 -2.8108 1.9402 25 1 17.0705 -2.1411 -0.3882 26 6 8.4395 0.7641 -1.4606 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.5965 1.3471 2.1307 35 1 4.8578 0.3917 1.3154 36 1 4.9942 2.1648 1.3916 37 1 3.6744 1.7167 -2.0697 38 1 5.8802 1.8144 -3.1315 39 1 7.9370 3.1668 -3.7882 40 1 10.3966 3.1476 -3.7700 41 1 11.6080 1.6026 -2.2872 42 1 12.2605 -0.2949 -1.6957 43 1 12.2671 0.9405 -0.4144 44 1 12.1613 -0.8418 1.3057 45 1 12.1549 -2.0778 0.0249 46 1 14.6621 -3.3025 2.4273 47 1 7.8912 0.0962 -0.8127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920221702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:25 Heat of formation + Delta-G solvation = -55.820879 kcal Electronic energy + Delta-G solvation = -25074.915601 eV Core-core repulsion = 21415.575305 eV Total energy + Delta-G solvation = -3659.340295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.65494 -39.32022 -37.52965 -36.62632 -34.54081 -33.31479 -33.17532 -30.83376 -29.88151 -29.08302 -27.68489 -27.37999 -25.01144 -23.39715 -22.40558 -21.99379 -21.25471 -20.21229 -19.14119 -17.97176 -17.23470 -16.37175 -16.04365 -15.61181 -15.55249 -15.32334 -15.20025 -15.00174 -14.66100 -14.38527 -14.11565 -13.83864 -13.49207 -13.28746 -13.00459 -12.72919 -12.58210 -12.28755 -12.22415 -11.95438 -11.77324 -11.69223 -11.66994 -11.57187 -11.34587 -11.07611 -10.87853 -10.80431 -10.51471 -10.21255 -9.77785 -9.64991 -9.58479 -9.42050 -9.26733 -8.41560 -8.17924 -7.76239 -6.06394 -4.11122 0.99611 1.56495 1.69786 2.94855 3.09569 3.31178 3.35345 3.37293 3.89793 4.03449 4.28672 4.41721 4.45118 4.60915 4.71105 4.82640 5.01079 5.04908 5.14026 5.24390 5.29629 5.29639 5.35217 5.39992 5.42877 5.52294 5.60445 5.66779 5.69286 5.73774 5.85389 5.86233 5.96320 6.08100 6.09175 6.19184 6.28842 6.38846 6.45115 6.58475 6.65055 6.80501 7.05109 7.34088 7.55675 7.69404 7.85733 8.07065 8.12740 8.28112 8.94294 9.52764 11.05140 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016912 B = 0.002158 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.214906 B =12974.361777 C =14346.555849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.093 4.093 4 C -0.020 4.020 5 C -0.122 4.122 6 C -0.237 4.237 7 C 0.541 3.459 8 O -0.512 6.512 9 N -0.670 5.670 10 C 0.177 3.823 11 C -0.197 4.197 12 C -0.063 4.063 13 C -0.227 4.227 14 C 0.162 3.838 15 O -0.312 6.312 16 C 0.065 3.935 17 C 0.025 3.975 18 C -0.527 4.527 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.889 5.889 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 C -0.163 4.163 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.409 0.591 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.131 0.869 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.264 0.736 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.217 10.946 -9.462 29.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.130 4.130 4 C -0.021 4.021 5 C -0.178 4.178 6 C -0.257 4.257 7 C 0.332 3.668 8 O -0.388 6.388 9 N -0.315 5.315 10 C 0.083 3.917 11 C -0.218 4.218 12 C -0.081 4.081 13 C -0.246 4.246 14 C 0.114 3.886 15 O -0.225 6.225 16 C -0.009 4.009 17 C -0.012 4.012 18 C -0.565 4.565 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.527 5.527 22 Si 0.727 3.273 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.184 4.184 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.145 0.855 38 H 0.245 0.755 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.149 0.851 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -25.877 10.452 -8.420 29.150 hybrid contribution 0.994 0.275 -0.700 1.247 sum -24.882 10.727 -9.120 28.589 Atomic orbital electron populations 1.21781 0.95352 1.01963 1.01883 1.21479 0.95922 0.95387 1.02924 1.20891 0.90593 0.98118 1.03420 1.22620 0.95580 0.88459 0.95481 1.21098 0.99260 1.04732 0.92707 1.22252 0.92411 1.11805 0.99277 1.18713 0.88236 0.76976 0.82874 1.90857 1.70344 1.45339 1.32295 1.43331 1.04753 1.71704 1.11691 1.17297 0.81956 0.94950 0.97480 1.20626 0.94365 1.02086 1.04696 1.20648 0.93271 0.97089 0.97123 1.21381 1.00868 1.00923 1.01455 1.18996 0.91491 0.88985 0.89085 1.86190 1.22923 1.55586 1.57804 1.23341 0.74573 1.01591 1.01398 1.19124 0.94911 0.93357 0.93833 1.20936 0.90440 1.21467 1.23635 0.92405 1.24995 0.98976 0.95145 0.95111 1.69971 1.35772 1.22522 1.24461 0.86542 0.84949 0.77892 0.77940 1.20103 1.21135 1.20116 1.20424 0.91482 1.02283 1.04199 0.92665 0.92443 0.92601 0.91572 0.91399 0.90318 0.90697 0.92714 0.89175 0.90059 0.85535 0.75534 0.86196 0.85778 0.85115 0.93082 0.93087 0.95351 0.95391 0.92671 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.16 0.37 -0.34 16 2 C -0.12 -0.69 5.92 -26.73 -0.16 -0.85 16 3 C -0.09 -0.53 5.32 -27.88 -0.15 -0.68 16 4 C -0.02 -0.16 5.36 -101.16 -0.54 -0.71 16 5 C -0.12 -1.22 8.34 36.01 0.30 -0.92 16 6 C -0.24 -2.05 9.63 -37.81 -0.36 -2.41 16 7 C 0.54 6.63 7.53 -12.68 -0.10 6.53 16 8 O -0.51 -8.24 10.62 5.26 0.06 -8.19 16 9 N -0.67 -7.33 5.33 -10.96 -0.06 -7.39 16 10 C 0.18 2.51 6.29 -83.74 -0.53 1.98 16 11 C -0.20 -2.45 9.96 -39.36 -0.39 -2.84 16 12 C -0.06 -0.83 10.03 -39.64 -0.40 -1.23 16 13 C -0.23 -3.71 9.04 -39.39 -0.36 -4.06 16 14 C 0.16 3.09 6.68 -39.24 -0.26 2.82 16 15 O -0.31 -6.93 10.13 -19.41 -0.20 -7.12 16 16 C 0.06 1.46 4.68 37.16 0.17 1.63 16 17 C 0.02 0.68 5.34 -27.88 -0.15 0.53 16 18 C -0.53 -15.00 9.11 -34.44 -0.31 -15.31 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 22 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C -0.16 -2.88 8.63 -39.24 -0.34 -3.22 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.41 8.11 -51.93 -0.42 -0.02 16 33 H 0.07 0.35 7.99 -51.93 -0.41 -0.07 16 34 H 0.05 0.44 7.98 -51.93 -0.41 0.02 16 35 H 0.09 1.09 7.12 -51.93 -0.37 0.72 16 36 H 0.08 0.95 7.37 -51.93 -0.38 0.56 16 37 H 0.13 0.72 8.00 -52.48 -0.42 0.30 16 38 H 0.41 2.86 8.80 -40.82 -0.36 2.50 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 41 H 0.13 2.08 6.29 -52.49 -0.33 1.74 16 42 H 0.05 1.07 7.66 -51.93 -0.40 0.68 16 43 H 0.05 1.09 7.66 -51.93 -0.40 0.69 16 44 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.14 2.76 6.23 -52.48 -0.33 2.43 16 LS Contribution 389.83 15.07 5.87 5.87 Total: -1.00 -33.31 389.83 -9.49 -42.80 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.58 Total: 1.12 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -3.30 Total: -17.45 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.68 Total: -33.61 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.14 Total: -15.31 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.31 -9.49 -42.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920221702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.023 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds