Wall clock time and date at job start Tue Mar 31 2020 11:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46960 * 2 1 4 4 C 1.50701 * 109.47034 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99802 * 274.99645 * 4 3 2 6 6 C 1.33014 * 119.99992 * 95.27780 * 4 3 2 7 7 C 1.47072 * 120.00042 * 185.05498 * 6 4 3 8 8 O 1.21624 * 119.99628 * 5.30622 * 7 6 4 9 9 N 1.34770 * 119.99875 * 185.30283 * 7 6 4 10 10 C 1.39833 * 119.99777 * 175.56718 * 9 7 6 11 11 C 1.38956 * 120.04358 * 214.87712 * 10 9 7 12 12 C 1.38114 * 120.03249 * 179.74564 * 11 10 9 13 13 C 1.38216 * 120.13224 * 0.55796 * 12 11 10 14 14 C 1.38771 * 120.08626 * 359.70019 * 13 12 11 15 15 O 1.35896 * 120.02048 * 180.02562 * 14 13 12 16 16 C 1.42901 * 116.99972 * 0.02562 * 15 14 13 17 17 C 1.53007 * 109.47055 * 179.97438 * 16 15 14 18 18 C 1.50694 * 109.46971 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00228 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00046 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99942 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00169 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47148 * 60.00074 * 22 20 18 24 24 H 1.48497 * 109.47328 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47078 * 300.00464 * 22 20 18 26 26 C 1.38626 * 119.96024 * 0.02562 * 14 13 12 27 27 H 1.08997 * 109.47543 * 59.99771 * 1 2 3 28 28 H 1.09000 * 109.46810 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47079 * 299.99836 * 1 2 3 30 30 H 1.08998 * 109.47079 * 240.00164 * 2 1 3 31 31 H 1.08998 * 109.47541 * 119.99676 * 2 1 3 32 32 H 1.08998 * 109.47091 * 60.00171 * 3 2 1 33 33 H 1.09005 * 109.46962 * 299.99838 * 3 2 1 34 34 H 1.08995 * 109.47199 * 354.92694 * 5 4 3 35 35 H 1.09006 * 109.46776 * 114.92747 * 5 4 3 36 36 H 1.09002 * 109.47220 * 234.91817 * 5 4 3 37 37 H 1.08004 * 120.00522 * 5.04896 * 6 4 3 38 38 H 0.96998 * 120.00524 * 355.57449 * 9 7 6 39 39 H 1.07995 * 119.98588 * 0.02769 * 11 10 9 40 40 H 1.08003 * 119.93859 * 180.25453 * 12 11 10 41 41 H 1.07995 * 119.95931 * 179.71672 * 13 12 11 42 42 H 1.08993 * 109.47003 * 299.99966 * 16 15 14 43 43 H 1.09000 * 109.47257 * 60.00174 * 16 15 14 44 44 H 1.08993 * 109.46883 * 300.00251 * 17 16 15 45 45 H 1.09000 * 109.46821 * 60.00060 * 17 16 15 46 46 H 0.97001 * 120.00118 * 179.97438 * 21 20 18 47 47 H 1.08004 * 120.06057 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.3010 1.3287 1.2992 6 6 4.2115 1.5487 -1.1479 7 6 5.6780 1.4372 -1.1614 8 8 6.2755 1.1523 -0.1411 9 7 6.3595 1.6506 -2.3043 10 6 7.7578 1.6362 -2.2976 11 6 8.4664 2.4907 -3.1333 12 6 9.8474 2.4799 -3.1227 13 6 10.5281 1.6119 -2.2899 14 6 9.8257 0.7524 -1.4570 15 8 10.4963 -0.1001 -0.6384 16 6 11.9239 -0.0576 -0.6866 17 6 12.4981 -1.0796 0.2967 18 6 14.0035 -1.0351 0.2454 19 1 14.5010 -0.3466 -0.4215 20 6 14.7458 -1.8735 1.0499 21 7 14.1400 -2.7124 1.8616 22 14 16.6119 -1.8180 0.9868 23 1 17.0794 -0.4582 1.3577 24 1 17.1692 -2.8108 1.9402 25 1 17.0705 -2.1411 -0.3882 26 6 8.4395 0.7641 -1.4606 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.5965 1.3471 2.1307 35 1 4.8578 0.3917 1.3154 36 1 4.9942 2.1648 1.3916 37 1 3.6744 1.7167 -2.0697 38 1 5.8802 1.8144 -3.1315 39 1 7.9370 3.1668 -3.7882 40 1 10.3966 3.1476 -3.7700 41 1 11.6080 1.6026 -2.2872 42 1 12.2605 -0.2949 -1.6957 43 1 12.2671 0.9405 -0.4144 44 1 12.1613 -0.8418 1.3057 45 1 12.1549 -2.0778 0.0249 46 1 14.6621 -3.3025 2.4273 47 1 7.8912 0.0962 -0.8127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920221702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:24 Heat of formation + Delta-G solvation = -75.333712 kcal Electronic energy + Delta-G solvation = -25075.761740 eV Core-core repulsion = 21415.575305 eV Total energy + Delta-G solvation = -3660.186435 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.73133 -40.63196 -38.69901 -37.43667 -35.74239 -35.34902 -33.76422 -32.60920 -31.18490 -30.45630 -28.56178 -27.91990 -27.00094 -24.55236 -23.55709 -23.17432 -22.35148 -21.51047 -20.09817 -19.25272 -18.32636 -18.12263 -17.17232 -16.99783 -16.87058 -16.71593 -16.42442 -16.10223 -15.87134 -15.41998 -14.96346 -14.60316 -14.44706 -14.37315 -14.29277 -14.25123 -14.07951 -13.47839 -13.32868 -13.17083 -12.76179 -12.72853 -12.63799 -12.59767 -12.57483 -12.33398 -12.11825 -12.10449 -11.76516 -11.60986 -11.50541 -11.44404 -11.18426 -10.63502 -10.61792 -10.16213 -9.40618 -9.00196 -8.27560 -6.42276 0.08064 0.47332 0.53997 1.39736 1.44717 1.52675 1.98619 2.17877 2.31428 2.54186 2.83845 3.06330 3.63234 3.83198 3.91083 4.12560 4.15716 4.17881 4.20879 4.23111 4.24670 4.25986 4.44863 4.50801 4.57078 4.64487 4.70011 4.74740 4.77047 4.81805 4.88068 5.01346 5.07568 5.22132 5.24681 5.27182 5.28065 5.35628 5.40538 5.42982 5.46780 5.51198 5.52276 5.58227 5.66903 5.92171 6.05348 6.48177 6.55418 6.72309 7.17772 7.27904 8.85655 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016912 B = 0.002158 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.214906 B =12974.361777 C =14346.555849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.086 4.086 4 C -0.018 4.018 5 C -0.121 4.121 6 C -0.234 4.234 7 C 0.530 3.470 8 O -0.561 6.561 9 N -0.655 5.655 10 C 0.178 3.822 11 C -0.175 4.175 12 C -0.053 4.053 13 C -0.236 4.236 14 C 0.122 3.878 15 O -0.346 6.346 16 C 0.085 3.915 17 C 0.027 3.973 18 C -0.547 4.547 19 H 0.074 0.926 20 C -0.001 4.001 21 N -0.933 5.933 22 Si 0.981 3.019 23 H -0.263 1.263 24 H -0.282 1.282 25 H -0.262 1.262 26 C -0.187 4.187 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.168 0.832 38 H 0.432 0.568 39 H 0.168 0.832 40 H 0.166 0.834 41 H 0.132 0.868 42 H 0.065 0.935 43 H 0.061 0.939 44 H -0.006 1.006 45 H -0.004 1.004 46 H 0.267 0.733 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.149 13.680 -12.551 32.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.123 4.123 4 C -0.020 4.020 5 C -0.177 4.177 6 C -0.255 4.255 7 C 0.323 3.677 8 O -0.440 6.440 9 N -0.302 5.302 10 C 0.083 3.917 11 C -0.195 4.195 12 C -0.072 4.072 13 C -0.255 4.255 14 C 0.076 3.924 15 O -0.260 6.260 16 C 0.011 3.989 17 C -0.010 4.010 18 C -0.584 4.584 19 H 0.092 0.908 20 C -0.200 4.200 21 N -0.572 5.572 22 Si 0.803 3.197 23 H -0.187 1.187 24 H -0.208 1.208 25 H -0.186 1.186 26 C -0.208 4.208 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.185 0.815 38 H 0.272 0.728 39 H 0.186 0.814 40 H 0.184 0.816 41 H 0.150 0.850 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.012 0.988 45 H 0.015 0.985 46 H 0.076 0.924 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -26.856 13.212 -11.566 32.087 hybrid contribution 1.122 -0.539 0.251 1.269 sum -25.734 12.673 -11.315 30.837 Atomic orbital electron populations 1.21762 0.94272 1.02135 1.02563 1.21479 0.96808 0.95295 1.02210 1.20913 0.88090 0.98275 1.04986 1.22814 0.97175 0.87632 0.94350 1.21000 0.99259 1.02363 0.95094 1.22409 0.90059 1.11969 1.01053 1.19472 0.89825 0.75961 0.82411 1.90865 1.71575 1.47441 1.34166 1.43259 1.03529 1.70854 1.12521 1.17458 0.83481 0.94122 0.96622 1.21138 0.94225 1.00811 1.03359 1.21139 0.93898 0.96089 0.96054 1.21526 1.01080 1.01191 1.01708 1.19300 0.91995 0.90461 0.90675 1.86095 1.22430 1.57647 1.59873 1.22895 0.75351 1.00262 1.00436 1.18978 0.95464 0.93226 0.93339 1.21366 0.90976 1.21976 1.24125 0.90806 1.26120 1.05128 0.94385 0.94339 1.70134 1.38211 1.23441 1.25381 0.85273 0.77411 0.78419 0.78559 1.18743 1.20776 1.18615 1.20387 0.91208 1.03686 1.05557 0.91662 0.92596 0.92221 0.91904 0.92663 0.89429 0.88460 0.90824 0.92081 0.92215 0.81495 0.72834 0.81441 0.81649 0.84985 0.91703 0.92094 0.98767 0.98519 0.92430 0.86834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 71.98 0.71 -0.39 16 2 C -0.12 -1.21 5.92 30.59 0.18 -1.03 16 3 C -0.09 -0.78 5.32 29.85 0.16 -0.62 16 4 C -0.02 -0.28 5.36 -17.61 -0.09 -0.38 16 5 C -0.12 -2.59 8.34 71.24 0.59 -1.99 16 6 C -0.23 -3.65 9.63 23.42 0.23 -3.42 16 7 C 0.53 12.96 7.53 86.56 0.65 13.62 16 8 O -0.56 -19.47 10.62 -4.11 -0.04 -19.51 16 9 N -0.66 -13.22 5.33 -306.83 -1.63 -14.85 16 10 C 0.18 4.84 6.29 38.16 0.24 5.08 16 11 C -0.18 -3.67 9.96 22.41 0.22 -3.44 16 12 C -0.05 -1.23 10.03 22.23 0.22 -1.01 16 13 C -0.24 -7.56 9.04 22.39 0.20 -7.35 16 14 C 0.12 4.86 6.68 22.49 0.15 5.01 16 15 O -0.35 -16.60 10.13 -92.38 -0.94 -17.53 16 16 C 0.08 4.00 4.68 71.98 0.34 4.33 16 17 C 0.03 1.58 5.34 29.85 0.16 1.74 16 18 C -0.55 -31.96 9.11 25.60 0.23 -31.73 16 19 H 0.07 3.98 7.74 -2.91 -0.02 3.96 16 20 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 21 N -0.93 -58.68 13.29 21.45 0.28 -58.39 16 22 Si 0.98 44.52 29.54 68.60 2.03 46.55 16 23 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 26 C -0.19 -6.99 8.63 22.49 0.19 -6.80 16 27 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.09 0.68 8.11 -2.39 -0.02 0.66 16 33 H 0.10 0.51 7.99 -2.38 -0.02 0.50 16 34 H 0.07 1.22 7.98 -2.39 -0.02 1.20 16 35 H 0.06 1.66 7.12 -2.38 -0.02 1.65 16 36 H 0.06 1.52 7.37 -2.39 -0.02 1.50 16 37 H 0.17 1.20 8.00 -2.91 -0.02 1.17 16 38 H 0.43 4.51 8.80 -92.71 -0.82 3.69 16 39 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 40 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 41 H 0.13 4.10 6.29 -2.91 -0.02 4.09 16 42 H 0.06 2.82 7.66 -2.39 -0.02 2.80 16 43 H 0.06 2.69 7.66 -2.39 -0.02 2.67 16 44 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 45 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 46 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 47 H 0.11 4.86 6.23 -2.91 -0.02 4.84 16 Total: -1.00 -79.59 389.83 4.69 -74.90 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.14 Total: 16.85 kcal Atomic # 6 Polarization: -32.86 SS G_CDS: 4.86 Total: -28.00 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -1.35 Total: -73.25 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -0.98 Total: -37.05 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -79.59 4.69 -74.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920221702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.435 kcal (2) G-P(sol) polarization free energy of solvation -79.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds