Wall clock time and date at job start Tue Mar 31 2020 12:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35739 * 116.99913 * 2 1 4 4 C 1.39026 * 119.88289 * 180.02562 * 3 2 1 5 5 C 1.37662 * 120.10763 * 180.25330 * 4 3 2 6 6 C 1.39969 * 119.88798 * 359.49414 * 5 4 3 7 7 C 1.47000 * 120.11480 * 180.23141 * 6 5 4 8 8 C 1.34978 * 120.00120 * 43.99267 * 7 6 5 9 9 C 1.46256 * 119.99611 * 10.16475 * 8 7 6 10 10 O 1.21717 * 120.00176 * 7.33077 * 9 8 7 11 11 N 1.34778 * 120.00132 * 187.32615 * 9 8 7 12 12 C 1.46496 * 120.00577 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47289 * 89.99823 * 12 11 9 14 14 H 1.07994 * 119.99957 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99827 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00404 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99743 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47142 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47506 * 120.00171 * 17 15 13 20 20 H 1.48503 * 109.47048 * 239.99947 * 17 15 13 21 21 C 1.46503 * 119.99547 * 0.02562 * 11 9 8 22 22 C 1.53001 * 109.47234 * 89.99865 * 21 11 9 23 23 C 1.53001 * 109.46970 * 64.99827 * 22 21 11 24 24 C 1.53006 * 109.46974 * 184.99582 * 22 21 11 25 25 C 1.39972 * 119.77367 * 0.48532 * 6 5 4 26 26 C 1.37661 * 119.88384 * 359.76316 * 25 6 5 27 27 H 1.08995 * 109.47474 * 300.00101 * 1 2 3 28 28 H 1.09006 * 109.46966 * 60.00300 * 1 2 3 29 29 H 1.09002 * 109.46864 * 179.97438 * 1 2 3 30 30 H 1.07996 * 119.94439 * 359.97438 * 4 3 2 31 31 H 1.08004 * 120.05595 * 179.74632 * 5 4 3 32 32 H 1.08001 * 120.00398 * 223.99564 * 7 6 5 33 33 H 1.08001 * 120.00574 * 190.16350 * 8 7 6 34 34 H 1.09004 * 109.47487 * 210.00558 * 12 11 9 35 35 H 1.09001 * 109.46753 * 330.00152 * 12 11 9 36 36 H 0.97003 * 120.00256 * 179.97438 * 16 15 13 37 37 H 1.09006 * 109.46658 * 209.99845 * 21 11 9 38 38 H 1.08999 * 109.47535 * 329.99405 * 21 11 9 39 39 H 1.08997 * 109.47102 * 304.99586 * 22 21 11 40 40 H 1.09000 * 109.46923 * 60.00518 * 23 22 21 41 41 H 1.09002 * 109.46587 * 180.02562 * 23 22 21 42 42 H 1.08994 * 109.47226 * 299.99773 * 23 22 21 43 43 H 1.09000 * 109.46649 * 60.00502 * 24 22 21 44 44 H 1.09002 * 109.47124 * 179.97438 * 24 22 21 45 45 H 1.08997 * 109.47209 * 299.99938 * 24 22 21 46 46 H 1.08003 * 120.05897 * 179.79324 * 25 6 5 47 47 H 1.08000 * 119.94408 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 3.4337 1.2794 -0.0005 5 6 4.0634 2.5035 0.0047 6 6 3.3034 3.6789 -0.0001 7 6 3.9708 4.9887 0.0004 8 6 5.0296 5.2070 -0.8078 9 6 5.3766 4.2291 -1.8386 10 8 4.6373 3.2872 -2.0574 11 7 6.5148 4.3709 -2.5462 12 6 6.8622 3.3918 -3.5790 13 6 6.2839 3.8287 -4.9002 14 1 5.7148 4.7443 -4.9643 15 6 6.4812 3.0593 -6.0273 16 7 7.1745 1.9446 -5.9494 17 14 5.7649 3.6013 -7.6651 18 1 5.0332 4.8811 -7.4863 19 1 6.8626 3.7912 -8.6471 20 1 4.8287 2.5621 -8.1641 21 6 7.4048 5.5043 -2.2824 22 6 8.4227 5.1144 -1.2087 23 6 9.3290 4.0042 -1.7444 24 6 9.2715 6.3341 -0.8438 25 6 1.9058 3.6029 0.0001 26 6 1.2857 2.3738 0.0000 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 4.0191 0.3719 -0.0005 31 1 5.1422 2.5569 0.0084 32 1 3.6140 5.7764 0.6474 33 1 5.6206 6.1037 -0.6934 34 1 7.9467 3.3210 -3.6627 35 1 6.4544 2.4179 -3.3082 36 1 7.3130 1.4031 -6.7423 37 1 7.9291 5.7755 -3.1988 38 1 6.8176 6.3543 -1.9348 39 1 7.8976 4.7588 -0.3223 40 1 9.8542 4.3600 -2.6308 41 1 10.0539 3.7262 -0.9793 42 1 8.7244 3.1354 -2.0044 43 1 8.6258 7.1249 -0.4621 44 1 9.9964 6.0564 -0.0785 45 1 9.7966 6.6897 -1.7302 46 1 1.3149 4.5069 -0.0003 47 1 0.2074 2.3141 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920969963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:48 Heat of formation + Delta-G solvation = -24.867315 kcal Electronic energy + Delta-G solvation = -27009.985806 eV Core-core repulsion = 23351.987758 eV Total energy + Delta-G solvation = -3657.998048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.98632 -39.20310 -37.37938 -36.15319 -33.66411 -32.94973 -32.23808 -30.83364 -29.13077 -27.80621 -27.03609 -26.80487 -25.43149 -23.82758 -22.32261 -22.14043 -20.44580 -20.01698 -18.08959 -17.77661 -16.81674 -16.41645 -15.94680 -15.61310 -15.60295 -14.77796 -14.49366 -14.47612 -14.06630 -13.92563 -13.46875 -13.33557 -13.27992 -12.92964 -12.73301 -12.34909 -12.31192 -12.07399 -12.03505 -11.79868 -11.52035 -11.36483 -11.29240 -10.96965 -10.94108 -10.89418 -10.61017 -10.59048 -10.44756 -10.22704 -10.07737 -9.53997 -9.31536 -8.94883 -8.44272 -8.38532 -7.50346 -7.39004 -6.00363 -4.04178 1.13290 1.78529 2.25170 3.31529 3.39360 3.42556 3.43411 4.01262 4.10996 4.17275 4.48909 4.93722 5.02387 5.07200 5.13063 5.13606 5.15811 5.20465 5.22484 5.33904 5.43110 5.44149 5.54171 5.62830 5.75944 5.84500 5.86366 5.92102 5.94919 6.12450 6.18792 6.19811 6.27860 6.30725 6.34584 6.47333 6.58680 6.60968 6.72163 6.72965 6.96466 7.05826 7.20058 7.50147 7.61954 7.63227 7.96924 8.29353 8.51023 8.96072 9.19799 9.60755 11.07385 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009434 B = 0.004585 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.371386 B = 6106.067254 C = 8033.146950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.133 3.867 4 C -0.161 4.161 5 C 0.013 3.987 6 C -0.100 4.100 7 C -0.042 4.042 8 C -0.203 4.203 9 C 0.526 3.474 10 O -0.527 6.527 11 N -0.587 5.587 12 C 0.243 3.757 13 C -0.522 4.522 14 H 0.056 0.944 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.895 3.105 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.114 3.886 22 C -0.113 4.113 23 C -0.149 4.149 24 C -0.143 4.143 25 C -0.065 4.065 26 C -0.226 4.226 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.040 0.960 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.044 0.956 42 H 0.068 0.932 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.119 0.881 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.110 5.388 15.569 17.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.088 3.912 4 C -0.180 4.180 5 C -0.006 4.006 6 C -0.100 4.100 7 C -0.062 4.062 8 C -0.224 4.224 9 C 0.315 3.685 10 O -0.406 6.406 11 N -0.317 5.317 12 C 0.124 3.876 13 C -0.561 4.561 14 H 0.074 0.926 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.723 3.277 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.010 4.010 22 C -0.133 4.133 23 C -0.206 4.206 24 C -0.201 4.201 25 C -0.083 4.083 26 C -0.245 4.245 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.114 0.886 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.137 0.863 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.318 4.528 15.287 16.807 hybrid contribution -0.531 0.571 -1.253 1.475 sum -5.849 5.099 14.034 16.036 Atomic orbital electron populations 1.22991 0.78955 1.03460 1.01186 1.86016 1.20979 1.27583 1.88736 1.19128 0.92297 0.83733 0.96015 1.20197 0.91065 0.98605 1.08092 1.20852 0.99051 0.90506 0.90163 1.18718 0.92932 0.92930 1.05402 1.22175 0.93196 0.94709 0.96081 1.23345 0.99609 1.01418 0.98009 1.18241 0.81860 0.85865 0.82569 1.90853 1.49054 1.32530 1.68160 1.48200 1.20008 1.26643 1.36860 1.19385 0.96315 0.87756 0.84190 1.21485 1.33571 1.08072 0.93012 0.92582 1.24904 0.95258 0.94826 0.99041 1.69934 1.40289 1.13698 1.29496 0.86494 0.78861 0.78691 0.83682 1.19873 1.21016 1.20956 1.21570 0.91831 0.88907 0.98698 1.21588 0.96806 0.96163 0.98702 1.21927 0.99095 0.99229 1.00320 1.21782 0.99592 0.97474 1.01268 1.20847 0.93343 0.96691 0.97425 1.20896 0.99281 0.92364 1.11935 0.92942 0.92736 0.88636 0.85656 0.86198 0.85552 0.85492 0.94255 0.94023 0.92870 0.90142 0.91594 0.91486 0.92567 0.93681 0.91277 0.92971 0.92878 0.92539 0.86308 0.86102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.82 10.49 -18.93 -0.20 -5.02 16 3 C 0.13 2.18 6.70 -39.00 -0.26 1.92 16 4 C -0.16 -2.81 9.97 -39.50 -0.39 -3.20 16 5 C 0.01 0.22 6.57 -39.14 -0.26 -0.04 16 6 C -0.10 -1.61 4.55 -105.05 -0.48 -2.09 16 7 C -0.04 -0.58 9.80 -37.19 -0.36 -0.95 16 8 C -0.20 -3.13 9.15 -37.52 -0.34 -3.47 16 9 C 0.53 10.81 6.63 -13.04 -0.09 10.72 16 10 O -0.53 -12.80 11.69 5.17 0.06 -12.74 16 11 N -0.59 -12.19 2.28 -176.76 -0.40 -12.59 16 12 C 0.24 6.23 4.23 -5.20 -0.02 6.21 16 13 C -0.52 -14.88 9.39 -34.44 -0.32 -15.21 16 14 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 17 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 18 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 21 C 0.11 1.84 4.66 -4.04 -0.02 1.82 16 22 C -0.11 -1.54 3.13 -90.62 -0.28 -1.82 16 23 C -0.15 -2.26 8.18 37.16 0.30 -1.95 16 24 C -0.14 -1.53 9.19 37.16 0.34 -1.19 16 25 C -0.06 -0.96 9.79 -39.14 -0.38 -1.34 16 26 C -0.23 -3.32 9.01 -39.50 -0.36 -3.68 16 27 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 28 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 29 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.13 2.08 8.06 -52.49 -0.42 1.65 16 31 H 0.12 2.13 7.00 -52.48 -0.37 1.77 16 32 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.13 1.57 6.14 -52.49 -0.32 1.25 16 34 H 0.04 1.01 5.98 -51.93 -0.31 0.70 16 35 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 38 H 0.07 0.90 6.01 -51.93 -0.31 0.59 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 1.25 5.89 -51.93 -0.31 0.95 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 47 H 0.12 1.43 6.27 -52.49 -0.33 1.10 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -33.82 380.18 -8.45 -42.26 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.32 Total: 2.43 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -2.03 Total: -11.29 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.33 Total: -38.57 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.14 Total: -17.76 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.82 -8.45 -42.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920969963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.396 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds