Wall clock time and date at job start Tue Mar 31 2020 12:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35739 * 116.99913 * 2 1 4 4 C 1.39026 * 119.88289 * 180.02562 * 3 2 1 5 5 C 1.37662 * 120.10763 * 180.25330 * 4 3 2 6 6 C 1.39969 * 119.88798 * 359.49414 * 5 4 3 7 7 C 1.47000 * 120.11480 * 180.23141 * 6 5 4 8 8 C 1.34978 * 120.00120 * 43.99267 * 7 6 5 9 9 C 1.46256 * 119.99611 * 10.16475 * 8 7 6 10 10 O 1.21717 * 120.00176 * 7.33077 * 9 8 7 11 11 N 1.34778 * 120.00132 * 187.32615 * 9 8 7 12 12 C 1.46496 * 120.00577 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47289 * 89.99823 * 12 11 9 14 14 H 1.07994 * 119.99957 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99827 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00404 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99743 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47142 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47506 * 120.00171 * 17 15 13 20 20 H 1.48503 * 109.47048 * 239.99947 * 17 15 13 21 21 C 1.46503 * 119.99547 * 0.02562 * 11 9 8 22 22 C 1.53001 * 109.47234 * 89.99865 * 21 11 9 23 23 C 1.53001 * 109.46970 * 64.99827 * 22 21 11 24 24 C 1.53006 * 109.46974 * 184.99582 * 22 21 11 25 25 C 1.39972 * 119.77367 * 0.48532 * 6 5 4 26 26 C 1.37661 * 119.88384 * 359.76316 * 25 6 5 27 27 H 1.08995 * 109.47474 * 300.00101 * 1 2 3 28 28 H 1.09006 * 109.46966 * 60.00300 * 1 2 3 29 29 H 1.09002 * 109.46864 * 179.97438 * 1 2 3 30 30 H 1.07996 * 119.94439 * 359.97438 * 4 3 2 31 31 H 1.08004 * 120.05595 * 179.74632 * 5 4 3 32 32 H 1.08001 * 120.00398 * 223.99564 * 7 6 5 33 33 H 1.08001 * 120.00574 * 190.16350 * 8 7 6 34 34 H 1.09004 * 109.47487 * 210.00558 * 12 11 9 35 35 H 1.09001 * 109.46753 * 330.00152 * 12 11 9 36 36 H 0.97003 * 120.00256 * 179.97438 * 16 15 13 37 37 H 1.09006 * 109.46658 * 209.99845 * 21 11 9 38 38 H 1.08999 * 109.47535 * 329.99405 * 21 11 9 39 39 H 1.08997 * 109.47102 * 304.99586 * 22 21 11 40 40 H 1.09000 * 109.46923 * 60.00518 * 23 22 21 41 41 H 1.09002 * 109.46587 * 180.02562 * 23 22 21 42 42 H 1.08994 * 109.47226 * 299.99773 * 23 22 21 43 43 H 1.09000 * 109.46649 * 60.00502 * 24 22 21 44 44 H 1.09002 * 109.47124 * 179.97438 * 24 22 21 45 45 H 1.08997 * 109.47209 * 299.99938 * 24 22 21 46 46 H 1.08003 * 120.05897 * 179.79324 * 25 6 5 47 47 H 1.08000 * 119.94408 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 3.4337 1.2794 -0.0005 5 6 4.0634 2.5035 0.0047 6 6 3.3034 3.6789 -0.0001 7 6 3.9708 4.9887 0.0004 8 6 5.0296 5.2070 -0.8078 9 6 5.3766 4.2291 -1.8386 10 8 4.6373 3.2872 -2.0574 11 7 6.5148 4.3709 -2.5462 12 6 6.8622 3.3918 -3.5790 13 6 6.2839 3.8287 -4.9002 14 1 5.7148 4.7443 -4.9643 15 6 6.4812 3.0593 -6.0273 16 7 7.1745 1.9446 -5.9494 17 14 5.7649 3.6013 -7.6651 18 1 5.0332 4.8811 -7.4863 19 1 6.8626 3.7912 -8.6471 20 1 4.8287 2.5621 -8.1641 21 6 7.4048 5.5043 -2.2824 22 6 8.4227 5.1144 -1.2087 23 6 9.3290 4.0042 -1.7444 24 6 9.2715 6.3341 -0.8438 25 6 1.9058 3.6029 0.0001 26 6 1.2857 2.3738 0.0000 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 4.0191 0.3719 -0.0005 31 1 5.1422 2.5569 0.0084 32 1 3.6140 5.7764 0.6474 33 1 5.6206 6.1037 -0.6934 34 1 7.9467 3.3210 -3.6627 35 1 6.4544 2.4179 -3.3082 36 1 7.3130 1.4031 -6.7423 37 1 7.9291 5.7755 -3.1988 38 1 6.8176 6.3543 -1.9348 39 1 7.8976 4.7588 -0.3223 40 1 9.8542 4.3600 -2.6308 41 1 10.0539 3.7262 -0.9793 42 1 8.7244 3.1354 -2.0044 43 1 8.6258 7.1249 -0.4621 44 1 9.9964 6.0564 -0.0785 45 1 9.7966 6.6897 -1.7302 46 1 1.3149 4.5069 -0.0003 47 1 0.2074 2.3141 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920969963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:47 Heat of formation + Delta-G solvation = -44.606041 kcal Electronic energy + Delta-G solvation = -27010.841741 eV Core-core repulsion = 23351.987758 eV Total energy + Delta-G solvation = -3658.853983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.25796 -40.59163 -38.60369 -37.51403 -35.41489 -34.24801 -34.06516 -32.03448 -30.54899 -29.38783 -28.09178 -27.95690 -26.84835 -25.54137 -23.67365 -23.49533 -21.84530 -21.19909 -19.34468 -19.06306 -18.65147 -18.12738 -17.28664 -16.97645 -16.63020 -16.39541 -16.12098 -15.80201 -15.36723 -15.24525 -14.72777 -14.56416 -14.47615 -14.30080 -14.10911 -13.94293 -13.58838 -13.43488 -13.38374 -12.99943 -12.94824 -12.79542 -12.70924 -12.60645 -12.43767 -12.18762 -12.07756 -11.91879 -11.79047 -11.73189 -11.52841 -11.47393 -10.62573 -10.51029 -10.44748 -9.78747 -9.19599 -8.63296 -8.20542 -6.35274 -0.08316 0.55339 1.03454 1.32985 1.35580 1.47239 2.31660 2.40110 2.56445 2.61999 2.94455 3.07868 3.84154 3.88259 3.93725 3.99171 4.04330 4.08874 4.26887 4.30239 4.38400 4.42823 4.47952 4.64187 4.69680 4.70340 4.74792 4.77418 4.84128 4.94175 5.03941 5.07478 5.10405 5.13813 5.15432 5.25762 5.32038 5.38216 5.38681 5.47636 5.52383 5.54047 5.62413 5.78844 5.88512 5.96457 6.11753 6.50080 6.74028 6.93063 7.31111 7.63754 8.85306 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009434 B = 0.004585 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.371386 B = 6106.067254 C = 8033.146950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.122 3.878 4 C -0.193 4.193 5 C -0.002 4.002 6 C -0.121 4.121 7 C -0.014 4.014 8 C -0.218 4.218 9 C 0.514 3.486 10 O -0.578 6.578 11 N -0.595 5.595 12 C 0.265 3.735 13 C -0.538 4.538 14 H 0.049 0.951 15 C 0.008 3.992 16 N -0.929 5.929 17 Si 0.963 3.037 18 H -0.267 1.267 19 H -0.268 1.268 20 H -0.284 1.284 21 C 0.110 3.890 22 C -0.104 4.104 23 C -0.147 4.147 24 C -0.135 4.135 25 C -0.063 4.063 26 C -0.226 4.226 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.181 0.819 33 H 0.166 0.834 34 H 0.031 0.969 35 H -0.011 1.011 36 H 0.265 0.735 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.065 0.935 42 H 0.027 0.973 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.156 0.844 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.789 8.758 16.769 20.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.077 3.923 4 C -0.212 4.212 5 C -0.021 4.021 6 C -0.121 4.121 7 C -0.034 4.034 8 C -0.238 4.238 9 C 0.306 3.694 10 O -0.461 6.461 11 N -0.324 5.324 12 C 0.143 3.857 13 C -0.577 4.577 14 H 0.067 0.933 15 C -0.191 4.191 16 N -0.569 5.569 17 Si 0.788 3.212 18 H -0.192 1.192 19 H -0.193 1.193 20 H -0.210 1.210 21 C -0.012 4.012 22 C -0.124 4.124 23 C -0.205 4.205 24 C -0.193 4.193 25 C -0.081 4.081 26 C -0.244 4.244 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.136 0.864 30 H 0.131 0.869 31 H 0.119 0.881 32 H 0.198 0.802 33 H 0.183 0.817 34 H 0.049 0.951 35 H 0.007 0.993 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.046 0.954 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.174 0.826 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.980 7.934 16.512 19.604 hybrid contribution -0.081 -0.612 -1.565 1.683 sum -7.061 7.322 14.947 18.080 Atomic orbital electron populations 1.23344 0.76375 1.05490 1.02312 1.85986 1.23706 1.27301 1.88601 1.19266 0.92023 0.85023 0.95990 1.20314 0.92394 0.98482 1.10035 1.20807 0.98402 0.91610 0.91270 1.19099 0.93973 0.93478 1.05593 1.22681 0.91228 0.94411 0.95034 1.23266 1.01439 1.01413 0.97671 1.19202 0.80857 0.86182 0.83159 1.90831 1.50580 1.34832 1.69818 1.48170 1.21307 1.26967 1.35955 1.18744 0.95062 0.86983 0.84894 1.21774 1.33587 1.07879 0.94438 0.93259 1.25811 0.95540 0.94791 1.02940 1.70061 1.41375 1.14789 1.30687 0.85434 0.78382 0.78250 0.79145 1.19164 1.19313 1.20995 1.21861 0.92062 0.88264 0.99050 1.21521 0.96239 0.96961 0.97668 1.21893 0.99284 0.98467 1.00811 1.21726 0.99640 0.96233 1.01707 1.21312 0.92953 0.98125 0.95693 1.21292 1.00843 0.91688 1.10608 0.90869 0.92357 0.86375 0.86909 0.88118 0.80184 0.81701 0.95083 0.99251 0.92583 0.91631 0.88092 0.91122 0.93336 0.91567 0.95417 0.90616 0.91603 0.92589 0.82594 0.82926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.34 -10.43 10.49 -90.64 -0.95 -11.38 16 3 C 0.12 4.08 6.70 22.65 0.15 4.24 16 4 C -0.19 -7.30 9.97 22.32 0.22 -7.07 16 5 C 0.00 -0.09 6.57 22.55 0.15 0.06 16 6 C -0.12 -3.79 4.55 -20.14 -0.09 -3.88 16 7 C -0.01 -0.35 9.80 23.82 0.23 -0.12 16 8 C -0.22 -6.21 9.15 23.61 0.22 -5.99 16 9 C 0.51 21.67 6.63 86.33 0.57 22.24 16 10 O -0.58 -29.71 11.69 -4.40 -0.05 -29.76 16 11 N -0.59 -25.64 2.28 -831.36 -1.90 -27.54 16 12 C 0.26 14.58 4.23 85.63 0.36 14.95 16 13 C -0.54 -31.95 9.39 25.60 0.24 -31.71 16 14 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 15 C 0.01 0.46 5.46 84.65 0.46 0.92 16 16 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 17 Si 0.96 46.38 29.54 68.60 2.03 48.41 16 18 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 21 C 0.11 3.48 4.66 86.38 0.40 3.88 16 22 C -0.10 -2.74 3.13 -10.79 -0.03 -2.77 16 23 C -0.15 -4.63 8.18 71.98 0.59 -4.04 16 24 C -0.14 -2.48 9.19 71.98 0.66 -1.82 16 25 C -0.06 -1.70 9.79 22.55 0.22 -1.48 16 26 C -0.23 -6.26 9.01 22.32 0.20 -6.06 16 27 H 0.07 1.08 7.65 -2.39 -0.02 1.06 16 28 H 0.06 1.06 7.65 -2.38 -0.02 1.04 16 29 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.11 4.27 8.06 -2.91 -0.02 4.24 16 31 H 0.10 3.96 7.00 -2.91 -0.02 3.94 16 32 H 0.18 2.51 8.06 -2.91 -0.02 2.49 16 33 H 0.17 3.35 6.14 -2.91 -0.02 3.33 16 34 H 0.03 1.74 5.98 -2.39 -0.01 1.72 16 35 H -0.01 -0.69 7.42 -2.39 -0.02 -0.70 16 36 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 37 H 0.07 2.25 8.07 -2.38 -0.02 2.23 16 38 H 0.10 2.47 6.01 -2.39 -0.01 2.45 16 39 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.03 1.07 5.89 -2.39 -0.01 1.06 16 43 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 47 H 0.15 3.13 6.27 -2.91 -0.02 3.12 16 Total: -1.00 -80.80 380.18 6.03 -74.77 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.95 Total: 20.25 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 5.67 Total: -17.19 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -1.61 Total: -85.09 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -1.00 Total: -41.15 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -80.80 6.03 -74.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920969963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.161 kcal (2) G-P(sol) polarization free energy of solvation -80.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds