Wall clock time and date at job start Tue Mar 31 2020 12:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47039 * 2 1 4 4 C 1.53004 * 109.47173 * 120.00001 * 2 1 3 5 5 H 1.09004 * 109.48853 * 299.97439 * 4 2 1 6 6 C 1.53091 * 109.48065 * 179.97438 * 4 2 1 7 7 C 1.53171 * 109.16226 * 182.40963 * 6 4 2 8 8 H 1.09007 * 109.54396 * 176.84845 * 7 6 4 9 9 C 1.50700 * 109.61797 * 297.06753 * 7 6 4 10 10 O 1.21284 * 119.99899 * 359.60354 * 9 7 6 11 11 N 1.34777 * 120.00290 * 179.60091 * 9 7 6 12 12 C 1.39234 * 119.99990 * 174.90605 * 11 9 7 13 13 C 1.39478 * 119.83760 * 325.33877 * 12 11 9 14 14 C 1.36371 * 120.17399 * 179.76233 * 13 12 11 15 15 C 1.40865 * 119.82437 * 0.51212 * 14 13 12 16 16 C 1.41153 * 120.16309 * 179.72049 * 15 14 13 17 17 H 1.08005 * 119.99989 * 205.36398 * 16 15 14 18 18 C 1.39905 * 120.00308 * 25.36725 * 16 15 14 19 19 N 1.30874 * 119.99892 * 16.82151 * 18 16 15 20 20 Si 1.86799 * 120.00304 * 196.81925 * 18 16 15 21 21 H 1.48502 * 109.46738 * 60.00192 * 20 18 16 22 22 H 1.48500 * 109.46985 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47209 * 300.00257 * 20 18 16 24 24 C 1.40870 * 119.67624 * 359.74075 * 15 14 13 25 25 C 1.36377 * 119.82361 * 0.02562 * 24 15 14 26 26 C 1.53178 * 109.03712 * 56.98197 * 7 6 4 27 27 C 1.53091 * 109.16379 * 303.01631 * 26 7 6 28 28 O 1.42905 * 109.41378 * 57.60910 * 27 26 7 29 29 H 1.09005 * 109.47171 * 300.00157 * 1 2 3 30 30 H 1.08992 * 109.47439 * 59.99864 * 1 2 3 31 31 H 1.08996 * 109.47272 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46513 * 239.99684 * 2 1 3 33 33 H 1.08998 * 109.47208 * 60.00334 * 3 2 1 34 34 H 1.09001 * 109.47047 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47348 * 299.99935 * 3 2 1 36 36 H 1.09001 * 109.51993 * 302.31305 * 6 4 2 37 37 H 1.08997 * 109.51954 * 62.50202 * 6 4 2 38 38 H 0.96999 * 119.99843 * 354.90621 * 11 9 7 39 39 H 1.08001 * 119.91288 * 0.02562 * 13 12 11 40 40 H 1.08003 * 120.09241 * 180.25802 * 14 13 12 41 41 H 0.96994 * 120.00385 * 180.02562 * 19 18 16 42 42 H 1.07997 * 120.09130 * 180.02562 * 24 15 14 43 43 H 1.08001 * 119.91115 * 180.02562 * 25 24 15 44 44 H 1.09006 * 109.51912 * 183.11602 * 26 7 6 45 45 H 1.08995 * 109.57795 * 62.95350 * 26 7 6 46 46 H 1.08997 * 109.48244 * 297.62863 * 27 26 7 47 47 H 1.08994 * 109.48298 * 177.59309 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 1 1.6772 -0.2074 2.1395 6 6 3.5710 -0.7219 1.2492 7 6 4.0735 -1.4974 2.4707 8 1 5.1620 -1.5498 2.4469 9 6 3.6298 -0.7997 3.7306 10 8 2.9814 0.2229 3.6613 11 7 3.9536 -1.3120 4.9344 12 6 3.6363 -0.6136 6.0964 13 6 3.6793 0.7805 6.1017 14 6 3.3652 1.4717 7.2346 15 6 3.0071 0.7736 8.4045 16 6 2.6864 1.4816 9.5828 17 1 2.8116 1.0108 10.5467 18 6 2.2064 2.7933 9.5020 19 7 1.7441 3.2522 8.3669 20 14 2.2250 3.8895 11.0144 21 1 3.6216 4.0476 11.4939 22 1 1.6677 5.2215 10.6671 23 1 1.4013 3.2713 12.0841 24 6 2.9711 -0.6346 8.3930 25 6 3.2831 -1.3117 7.2511 26 6 3.4916 -2.9140 2.4373 27 6 1.9637 -2.8287 2.3916 28 8 1.5644 -2.0688 1.2491 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 3.9349 -1.1996 0.3395 37 1 3.9356 0.3042 1.2938 38 1 4.4076 -2.1673 4.9913 39 1 3.9579 1.3142 5.2051 40 1 3.3949 2.5513 7.2360 41 1 1.4116 4.1616 8.3107 42 1 2.6971 -1.1765 9.2861 43 1 3.2556 -2.3913 7.2406 44 1 3.7995 -3.4554 3.3319 45 1 3.8538 -3.4369 1.5522 46 1 1.5995 -2.3427 3.2967 47 1 1.5454 -3.8329 2.3245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929405718.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:56 Heat of formation + Delta-G solvation = -81.830513 kcal Electronic energy + Delta-G solvation = -27221.432382 eV Core-core repulsion = 23560.964225 eV Total energy + Delta-G solvation = -3660.468157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.65169 -38.68780 -37.13228 -35.38432 -34.47594 -33.72704 -32.83768 -30.06823 -29.52910 -29.00008 -27.18111 -25.80979 -24.61310 -23.62135 -22.22337 -21.31966 -20.43302 -20.15011 -18.98922 -17.33946 -16.79774 -16.48234 -16.22874 -16.07934 -15.22518 -14.89617 -14.44854 -14.28372 -14.01467 -13.90274 -13.57465 -13.31006 -13.13044 -12.80830 -12.60884 -12.32118 -12.24003 -12.07027 -11.89299 -11.81685 -11.57992 -11.43640 -11.22499 -11.12814 -11.09301 -10.97936 -10.79539 -10.54208 -10.49290 -10.18536 -9.96867 -9.77234 -9.50618 -9.34253 -8.99597 -8.63110 -7.54618 -7.02212 -6.74561 -4.30931 2.55728 2.99313 3.06079 3.08183 3.09748 3.35747 3.70382 3.81968 3.92521 4.54034 4.63123 4.73712 4.75815 4.86996 5.02599 5.13578 5.19537 5.36975 5.38068 5.51654 5.62182 5.67225 5.69203 5.69643 5.75485 5.86405 5.88023 5.95565 5.98777 6.04474 6.12583 6.14890 6.22547 6.35895 6.38167 6.46131 6.79334 6.97629 7.03011 7.14058 7.27610 7.35471 7.57233 7.66216 7.95340 8.03279 8.19195 8.30432 8.60858 8.77121 8.87009 8.99357 10.18263 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017389 B = 0.003292 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.853282 B = 8502.634936 C = 9451.137341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.147 4.147 4 C 0.083 3.917 5 H 0.089 0.911 6 C -0.127 4.127 7 C -0.112 4.112 8 H 0.097 0.903 9 C 0.500 3.500 10 O -0.523 6.523 11 N -0.651 5.651 12 C -0.007 4.007 13 C -0.085 4.085 14 C -0.155 4.155 15 C 0.107 3.893 16 C -0.460 4.460 17 H 0.078 0.922 18 C 0.075 3.925 19 N -0.789 5.789 20 Si 0.909 3.091 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.265 1.265 24 C -0.216 4.216 25 C -0.104 4.104 26 C -0.145 4.145 27 C 0.060 3.940 28 O -0.381 6.381 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.392 0.608 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.282 0.718 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.053 0.947 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.179 -8.126 -13.508 16.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 C -0.204 4.204 4 C 0.026 3.974 5 H 0.107 0.893 6 C -0.165 4.165 7 C -0.134 4.134 8 H 0.115 0.885 9 C 0.286 3.714 10 O -0.399 6.399 11 N -0.294 5.294 12 C -0.099 4.099 13 C -0.105 4.105 14 C -0.175 4.175 15 C 0.104 3.896 16 C -0.490 4.490 17 H 0.096 0.904 18 C -0.144 4.144 19 N -0.414 5.414 20 Si 0.733 3.267 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.190 1.190 24 C -0.236 4.236 25 C -0.124 4.124 26 C -0.183 4.183 27 C -0.017 4.017 28 O -0.300 6.300 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.226 0.774 39 H 0.118 0.882 40 H 0.137 0.863 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.071 0.929 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.488 -7.234 -13.833 15.807 hybrid contribution 0.423 0.081 0.965 1.057 sum 2.911 -7.152 -12.868 15.007 Atomic orbital electron populations 1.21761 0.94821 1.02134 1.01366 1.21040 0.96437 0.95723 0.96992 1.21854 1.01179 0.95233 1.02156 1.22463 0.92384 0.82793 0.99788 0.89304 1.22017 0.97183 1.01244 0.96027 1.21427 1.01858 0.96029 0.94066 0.88510 1.20473 0.80343 0.85900 0.84668 1.90676 1.38108 1.24519 1.86621 1.43032 1.58233 1.23162 1.04957 1.17159 1.15708 0.91271 0.85753 1.20385 1.00428 0.91892 0.97749 1.20981 1.03821 0.99845 0.92853 1.17653 0.88005 0.90871 0.93065 1.19525 1.38143 0.97201 0.94096 0.90424 1.25934 0.92641 0.98441 0.97352 1.69845 1.27775 1.17179 1.26571 0.86361 0.79681 0.78847 0.81800 1.18817 1.20305 1.19000 1.20550 1.11556 0.94507 0.96965 1.20043 1.02094 0.96875 0.93414 1.22178 0.97492 0.95338 1.03315 1.22522 0.93286 0.96377 0.89562 1.87839 1.74868 1.23954 1.43352 0.92652 0.93111 0.92079 0.91191 0.91900 0.92396 0.92596 0.91032 0.89887 0.77445 0.88238 0.86257 0.90708 0.88680 0.89316 0.90598 0.90150 0.92919 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.05 37.16 0.34 -1.38 16 2 C -0.08 -1.01 2.72 -90.62 -0.25 -1.26 16 3 C -0.15 -1.69 8.84 37.16 0.33 -1.36 16 4 C 0.08 1.17 1.94 -26.68 -0.05 1.11 16 5 H 0.09 1.57 5.83 -51.93 -0.30 1.27 16 6 C -0.13 -1.58 4.13 -26.60 -0.11 -1.69 16 7 C -0.11 -1.38 3.05 -91.59 -0.28 -1.66 16 8 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 9 C 0.50 8.47 5.54 -10.99 -0.06 8.41 16 10 O -0.52 -11.01 11.60 5.55 0.06 -10.94 16 11 N -0.65 -11.14 5.22 -9.74 -0.05 -11.19 16 12 C -0.01 -0.15 6.27 -83.57 -0.52 -0.67 16 13 C -0.08 -2.08 8.57 -39.79 -0.34 -2.42 16 14 C -0.16 -4.13 8.63 -39.26 -0.34 -4.47 16 15 C 0.11 2.85 5.57 -106.80 -0.59 2.25 16 16 C -0.46 -12.19 9.04 -37.85 -0.34 -12.53 16 17 H 0.08 1.95 7.90 -52.48 -0.41 1.54 16 18 C 0.07 1.88 5.15 -17.34 -0.09 1.79 16 19 N -0.79 -20.79 10.94 55.55 0.61 -20.18 16 20 Si 0.91 18.68 29.59 -169.99 -5.03 13.65 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 23 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 24 C -0.22 -5.21 9.74 -39.26 -0.38 -5.59 16 25 C -0.10 -2.26 9.89 -39.79 -0.39 -2.66 16 26 C -0.15 -1.51 5.56 -26.59 -0.15 -1.66 16 27 C 0.06 0.74 6.62 37.20 0.25 0.99 16 28 O -0.38 -5.36 9.73 -35.23 -0.34 -5.71 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.75 7.68 -51.93 -0.40 0.35 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.63 6.49 -51.93 -0.34 0.29 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.08 1.09 6.45 -51.93 -0.34 0.76 16 38 H 0.39 5.23 8.06 -40.82 -0.33 4.90 16 39 H 0.10 2.44 6.48 -52.49 -0.34 2.10 16 40 H 0.12 3.30 6.18 -52.48 -0.32 2.98 16 41 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 42 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 43 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.08 0.67 7.39 -51.93 -0.38 0.29 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.05 0.79 7.38 -51.93 -0.38 0.41 16 47 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 366.24 15.07 5.52 5.52 Total: -1.00 -29.89 366.24 -9.56 -39.45 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -7.33 Total: 12.19 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -2.99 Total: -22.79 kcal Atomic # 7 Polarization: -31.93 SS G_CDS: 0.56 Total: -31.37 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.28 Total: -16.65 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.89 -9.56 -39.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929405718.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.381 kcal (2) G-P(sol) polarization free energy of solvation -29.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds