Wall clock time and date at job start Tue Mar 31 2020 12:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47039 * 2 1 4 4 C 1.53004 * 109.47173 * 120.00001 * 2 1 3 5 5 H 1.09004 * 109.48853 * 299.97439 * 4 2 1 6 6 C 1.53091 * 109.48065 * 179.97438 * 4 2 1 7 7 C 1.53171 * 109.16226 * 182.40963 * 6 4 2 8 8 H 1.09007 * 109.54396 * 176.84845 * 7 6 4 9 9 C 1.50700 * 109.61797 * 297.06753 * 7 6 4 10 10 O 1.21284 * 119.99899 * 359.60354 * 9 7 6 11 11 N 1.34777 * 120.00290 * 179.60091 * 9 7 6 12 12 C 1.39234 * 119.99990 * 174.90605 * 11 9 7 13 13 C 1.39478 * 119.83760 * 325.33877 * 12 11 9 14 14 C 1.36371 * 120.17399 * 179.76233 * 13 12 11 15 15 C 1.40865 * 119.82437 * 0.51212 * 14 13 12 16 16 C 1.41153 * 120.16309 * 179.72049 * 15 14 13 17 17 H 1.08005 * 119.99989 * 205.36398 * 16 15 14 18 18 C 1.39905 * 120.00308 * 25.36725 * 16 15 14 19 19 N 1.30874 * 119.99892 * 16.82151 * 18 16 15 20 20 Si 1.86799 * 120.00304 * 196.81925 * 18 16 15 21 21 H 1.48502 * 109.46738 * 60.00192 * 20 18 16 22 22 H 1.48500 * 109.46985 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47209 * 300.00257 * 20 18 16 24 24 C 1.40870 * 119.67624 * 359.74075 * 15 14 13 25 25 C 1.36377 * 119.82361 * 0.02562 * 24 15 14 26 26 C 1.53178 * 109.03712 * 56.98197 * 7 6 4 27 27 C 1.53091 * 109.16379 * 303.01631 * 26 7 6 28 28 O 1.42905 * 109.41378 * 57.60910 * 27 26 7 29 29 H 1.09005 * 109.47171 * 300.00157 * 1 2 3 30 30 H 1.08992 * 109.47439 * 59.99864 * 1 2 3 31 31 H 1.08996 * 109.47272 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46513 * 239.99684 * 2 1 3 33 33 H 1.08998 * 109.47208 * 60.00334 * 3 2 1 34 34 H 1.09001 * 109.47047 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47348 * 299.99935 * 3 2 1 36 36 H 1.09001 * 109.51993 * 302.31305 * 6 4 2 37 37 H 1.08997 * 109.51954 * 62.50202 * 6 4 2 38 38 H 0.96999 * 119.99843 * 354.90621 * 11 9 7 39 39 H 1.08001 * 119.91288 * 0.02562 * 13 12 11 40 40 H 1.08003 * 120.09241 * 180.25802 * 14 13 12 41 41 H 0.96994 * 120.00385 * 180.02562 * 19 18 16 42 42 H 1.07997 * 120.09130 * 180.02562 * 24 15 14 43 43 H 1.08001 * 119.91115 * 180.02562 * 25 24 15 44 44 H 1.09006 * 109.51912 * 183.11602 * 26 7 6 45 45 H 1.08995 * 109.57795 * 62.95350 * 26 7 6 46 46 H 1.08997 * 109.48244 * 297.62863 * 27 26 7 47 47 H 1.08994 * 109.48298 * 177.59309 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 1 1.6772 -0.2074 2.1395 6 6 3.5710 -0.7219 1.2492 7 6 4.0735 -1.4974 2.4707 8 1 5.1620 -1.5498 2.4469 9 6 3.6298 -0.7997 3.7306 10 8 2.9814 0.2229 3.6613 11 7 3.9536 -1.3120 4.9344 12 6 3.6363 -0.6136 6.0964 13 6 3.6793 0.7805 6.1017 14 6 3.3652 1.4717 7.2346 15 6 3.0071 0.7736 8.4045 16 6 2.6864 1.4816 9.5828 17 1 2.8116 1.0108 10.5467 18 6 2.2064 2.7933 9.5020 19 7 1.7441 3.2522 8.3669 20 14 2.2250 3.8895 11.0144 21 1 3.6216 4.0476 11.4939 22 1 1.6677 5.2215 10.6671 23 1 1.4013 3.2713 12.0841 24 6 2.9711 -0.6346 8.3930 25 6 3.2831 -1.3117 7.2511 26 6 3.4916 -2.9140 2.4373 27 6 1.9637 -2.8287 2.3916 28 8 1.5644 -2.0688 1.2491 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 3.9349 -1.1996 0.3395 37 1 3.9356 0.3042 1.2938 38 1 4.4076 -2.1673 4.9913 39 1 3.9579 1.3142 5.2051 40 1 3.3949 2.5513 7.2360 41 1 1.4116 4.1616 8.3107 42 1 2.6971 -1.1765 9.2861 43 1 3.2556 -2.3913 7.2406 44 1 3.7995 -3.4554 3.3319 45 1 3.8538 -3.4369 1.5522 46 1 1.5995 -2.3427 3.2967 47 1 1.5454 -3.8329 2.3245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929405718.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:55 Heat of formation + Delta-G solvation = -98.936850 kcal Electronic energy + Delta-G solvation = -27222.174169 eV Core-core repulsion = 23560.964225 eV Total energy + Delta-G solvation = -3661.209944 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.90334 -40.10152 -38.79872 -36.41089 -36.15669 -34.97676 -34.42942 -31.44738 -31.10115 -30.75882 -28.18182 -27.28087 -26.03517 -24.61815 -23.63706 -23.15266 -22.04955 -21.16387 -20.37968 -19.26185 -18.29486 -17.65082 -17.43585 -17.21609 -17.00435 -16.15910 -15.79253 -15.62580 -15.43600 -15.08438 -14.84273 -14.60545 -14.54154 -14.22942 -14.00908 -13.77888 -13.56307 -13.51474 -13.20448 -13.17534 -12.94569 -12.79626 -12.73446 -12.45958 -12.32070 -12.15781 -12.04885 -11.77129 -11.76870 -11.69948 -11.47252 -11.21991 -11.19097 -10.76287 -10.45992 -10.13909 -9.47099 -8.87519 -8.62202 -6.28800 0.80801 1.12018 1.36341 1.44648 1.49893 1.82867 2.19367 2.35878 2.75408 2.81567 3.54098 3.71647 3.73100 3.80055 3.91719 4.02858 4.14772 4.21721 4.39117 4.41013 4.42354 4.45655 4.54705 4.70838 4.74720 4.76668 4.82615 4.90256 4.94809 4.97405 4.98898 5.02818 5.07766 5.11808 5.14883 5.21773 5.23778 5.28938 5.40812 5.42865 5.47703 5.65778 5.85559 6.06920 6.10276 6.31832 6.32974 6.65906 6.75230 6.91136 6.99714 7.45190 8.32333 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017389 B = 0.003292 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.853282 B = 8502.634936 C = 9451.137341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 C -0.143 4.143 4 C 0.083 3.917 5 H 0.042 0.958 6 C -0.126 4.126 7 C -0.104 4.104 8 H 0.131 0.869 9 C 0.496 3.504 10 O -0.568 6.568 11 N -0.644 5.644 12 C 0.010 3.990 13 C -0.099 4.099 14 C -0.180 4.180 15 C 0.074 3.926 16 C -0.497 4.497 17 H 0.082 0.918 18 C 0.031 3.969 19 N -0.831 5.831 20 Si 0.985 3.015 21 H -0.258 1.258 22 H -0.271 1.271 23 H -0.256 1.256 24 C -0.224 4.224 25 C -0.101 4.101 26 C -0.137 4.137 27 C 0.051 3.949 28 O -0.388 6.388 29 H 0.032 0.968 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.033 0.967 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.416 0.584 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.286 0.714 42 H 0.109 0.891 43 H 0.133 0.867 44 H 0.098 0.902 45 H 0.110 0.890 46 H 0.016 0.984 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.495 -10.706 -14.837 18.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 C -0.201 4.201 4 C 0.025 3.975 5 H 0.060 0.940 6 C -0.163 4.163 7 C -0.125 4.125 8 H 0.149 0.851 9 C 0.285 3.715 10 O -0.447 6.447 11 N -0.289 5.289 12 C -0.083 4.083 13 C -0.119 4.119 14 C -0.200 4.200 15 C 0.071 3.929 16 C -0.526 4.526 17 H 0.100 0.900 18 C -0.184 4.184 19 N -0.457 5.457 20 Si 0.805 3.195 21 H -0.182 1.182 22 H -0.196 1.196 23 H -0.180 1.180 24 C -0.244 4.244 25 C -0.121 4.121 26 C -0.174 4.174 27 C -0.025 4.025 28 O -0.308 6.308 29 H 0.051 0.949 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.089 0.911 38 H 0.253 0.747 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.127 0.873 43 H 0.151 0.849 44 H 0.116 0.884 45 H 0.129 0.871 46 H 0.035 0.965 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.827 -9.867 -15.179 18.504 hybrid contribution -0.009 0.763 1.229 1.446 sum 3.818 -9.104 -13.950 17.090 Atomic orbital electron populations 1.21743 0.95066 1.01803 1.01263 1.21078 0.96303 0.95859 0.96840 1.21829 1.01576 0.94962 1.01700 1.22348 0.93717 0.82687 0.98699 0.93963 1.22029 0.95750 1.01122 0.97431 1.21513 1.03778 0.96578 0.90668 0.85141 1.21474 0.78925 0.85241 0.85850 1.90688 1.39887 1.26827 1.87327 1.42956 1.58478 1.23816 1.03645 1.17235 1.12975 0.90514 0.87587 1.20425 1.01154 0.93578 0.96740 1.20876 1.05959 0.98994 0.94174 1.17987 0.89184 0.92418 0.93312 1.19818 1.39868 0.98681 0.94271 0.90002 1.26855 0.91490 0.99447 1.00564 1.69936 1.28992 1.17775 1.28967 0.85216 0.79902 0.76770 0.77600 1.18239 1.19560 1.17991 1.20834 1.11289 0.93733 0.98534 1.20413 1.00403 0.99051 0.92187 1.22209 0.95260 0.94077 1.05887 1.22704 0.95377 0.96785 0.87652 1.87827 1.75478 1.23736 1.43755 0.94870 0.91079 0.92478 0.89182 0.94743 0.91733 0.90584 0.87969 0.91090 0.74670 0.89146 0.88681 0.90315 0.87278 0.84884 0.88387 0.87124 0.96522 0.86451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.05 71.98 0.65 -2.72 16 2 C -0.08 -1.93 2.72 -10.79 -0.03 -1.96 16 3 C -0.14 -3.27 8.84 71.98 0.64 -2.63 16 4 C 0.08 2.30 1.94 30.63 0.06 2.36 16 5 H 0.04 1.59 5.83 -2.38 -0.01 1.57 16 6 C -0.13 -2.87 4.13 30.68 0.13 -2.74 16 7 C -0.10 -2.25 3.05 -11.42 -0.03 -2.28 16 8 H 0.13 2.04 8.14 -2.38 -0.02 2.02 16 9 C 0.50 16.39 5.54 87.66 0.49 16.88 16 10 O -0.57 -24.83 11.60 -3.04 -0.04 -24.87 16 11 N -0.64 -20.84 5.22 -303.11 -1.58 -22.43 16 12 C 0.01 0.45 6.27 38.56 0.24 0.69 16 13 C -0.10 -5.07 8.57 22.13 0.19 -4.88 16 14 C -0.18 -10.17 8.63 22.48 0.19 -9.98 16 15 C 0.07 4.08 5.57 -21.28 -0.12 3.97 16 16 C -0.50 -27.37 9.04 23.39 0.21 -27.15 16 17 H 0.08 4.25 7.90 -2.91 -0.02 4.22 16 18 C 0.03 1.61 5.15 85.24 0.44 2.05 16 19 N -0.83 -46.23 10.94 21.82 0.24 -45.99 16 20 Si 0.98 39.29 29.59 68.60 2.03 41.32 16 21 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 22 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 23 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 24 C -0.22 -10.85 9.74 22.48 0.22 -10.63 16 25 C -0.10 -4.23 9.89 22.13 0.22 -4.01 16 26 C -0.14 -2.25 5.56 30.68 0.17 -2.08 16 27 C 0.05 1.18 6.62 72.01 0.48 1.65 16 28 O -0.39 -10.38 9.73 -148.98 -1.45 -11.83 16 29 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.38 7.68 -2.39 -0.02 1.36 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 1.36 6.49 -2.39 -0.02 1.35 16 35 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 1.80 6.45 -2.39 -0.02 1.78 16 38 H 0.42 9.55 8.06 -92.71 -0.75 8.80 16 39 H 0.09 4.71 6.48 -2.91 -0.02 4.69 16 40 H 0.10 5.71 6.18 -2.91 -0.02 5.70 16 41 H 0.29 14.55 8.30 -92.71 -0.77 13.78 16 42 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 43 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 44 H 0.10 1.22 7.39 -2.38 -0.02 1.20 16 45 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.02 0.49 7.38 -2.39 -0.02 0.47 16 47 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -71.25 366.24 3.56 -67.69 By element: Atomic # 1 Polarization: 39.36 SS G_CDS: 0.22 Total: 39.58 kcal Atomic # 6 Polarization: -47.60 SS G_CDS: 4.14 Total: -43.46 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: -1.34 Total: -68.42 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -1.49 Total: -36.70 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -71.25 3.56 -67.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929405718.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.250 kcal (2) G-P(sol) polarization free energy of solvation -71.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds