Wall clock time and date at job start Tue Mar 31 2020 12:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46967 * 2 1 4 4 C 1.53001 * 109.47157 * 119.99277 * 2 1 3 5 5 H 1.09000 * 109.48444 * 300.03173 * 4 2 1 6 6 C 1.53090 * 109.48323 * 180.02562 * 4 2 1 7 7 C 1.53174 * 109.16289 * 182.39911 * 6 4 2 8 8 H 1.08994 * 109.54847 * 297.02475 * 7 6 4 9 9 C 1.50704 * 109.54069 * 176.84551 * 7 6 4 10 10 O 1.21276 * 120.00117 * 0.02562 * 9 7 6 11 11 N 1.34777 * 119.99701 * 179.97438 * 9 7 6 12 12 C 1.39245 * 119.99486 * 175.70978 * 11 9 7 13 13 C 1.39487 * 119.82883 * 215.28908 * 12 11 9 14 14 C 1.36370 * 120.16573 * 180.02562 * 13 12 11 15 15 C 1.40868 * 119.82954 * 359.97438 * 14 13 12 16 16 C 1.41154 * 120.16225 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00264 * 325.25155 * 16 15 14 18 18 C 1.39911 * 120.00008 * 145.25811 * 16 15 14 19 19 N 1.30868 * 119.99873 * 4.44266 * 18 16 15 20 20 Si 1.86796 * 119.99866 * 184.43954 * 18 16 15 21 21 H 1.48495 * 109.47465 * 60.00134 * 20 18 16 22 22 H 1.48502 * 109.47254 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47289 * 299.99760 * 20 18 16 24 24 C 1.40865 * 119.67490 * 0.25414 * 15 14 13 25 25 C 1.36377 * 119.82512 * 359.50657 * 24 15 14 26 26 C 1.53178 * 109.03664 * 56.98207 * 7 6 4 27 27 C 1.53084 * 109.16255 * 303.01911 * 26 7 6 28 28 O 1.42899 * 109.41961 * 57.61024 * 27 26 7 29 29 H 1.08999 * 109.47371 * 300.00207 * 1 2 3 30 30 H 1.08995 * 109.47095 * 60.00825 * 1 2 3 31 31 H 1.09005 * 109.46785 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47371 * 239.99793 * 2 1 3 33 33 H 1.09004 * 109.46997 * 59.99307 * 3 2 1 34 34 H 1.08997 * 109.47293 * 179.97438 * 3 2 1 35 35 H 1.09007 * 109.46445 * 299.99937 * 3 2 1 36 36 H 1.08999 * 109.51852 * 62.48967 * 6 4 2 37 37 H 1.09001 * 109.57233 * 302.34036 * 6 4 2 38 38 H 0.96994 * 120.00142 * 355.70783 * 11 9 7 39 39 H 1.07992 * 119.91581 * 0.02562 * 13 12 11 40 40 H 1.07997 * 120.08422 * 179.97438 * 14 13 12 41 41 H 0.97008 * 119.99843 * 179.97438 * 19 18 16 42 42 H 1.08005 * 120.09066 * 179.72797 * 24 15 14 43 43 H 1.08008 * 119.91736 * 180.22851 * 25 24 15 44 44 H 1.09006 * 109.52285 * 62.92304 * 26 7 6 45 45 H 1.08999 * 109.52011 * 183.10739 * 26 7 6 46 46 H 1.09001 * 109.48398 * 297.62272 * 27 26 7 47 47 H 1.09004 * 109.48317 * 177.59318 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 1 1.6764 -0.2076 2.1394 6 6 3.5709 -0.7207 1.2499 7 6 4.0735 -1.4958 2.4718 8 1 3.7519 -0.9901 3.3821 9 6 5.5785 -1.5671 2.4394 10 8 6.1907 -1.0491 1.5297 11 7 6.2441 -2.2058 3.4221 12 6 7.6271 -2.3493 3.3469 13 6 8.2318 -3.5085 3.8329 14 6 9.5857 -3.6560 3.7632 15 6 10.3737 -2.6343 3.1980 16 6 11.7757 -2.7794 3.1227 17 1 12.3078 -3.2982 3.9064 18 6 12.4762 -2.2511 2.0329 19 7 11.8446 -1.5477 1.1279 20 14 14.3129 -2.5495 1.8698 21 1 14.5720 -4.0095 1.7890 22 1 14.8144 -1.8884 0.6383 23 1 15.0128 -1.9873 3.0528 24 6 9.7562 -1.4645 2.7136 25 6 8.4007 -1.3334 2.7858 26 6 3.4926 -2.9128 2.4381 27 6 1.9648 -2.8286 2.3916 28 8 1.5654 -2.0691 1.2489 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6765 1.9564 0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8901 36 1 3.9348 0.3058 1.2947 37 1 3.9366 -1.1973 0.3404 38 1 5.7597 -2.5653 4.1817 39 1 7.6262 -4.2910 4.2656 40 1 10.0525 -4.5539 4.1403 41 1 12.3304 -1.1811 0.3725 42 1 10.3543 -0.6750 2.2830 43 1 7.9253 -0.4386 2.4115 44 1 3.8557 -3.4344 1.5525 45 1 3.8006 -3.4540 3.3327 46 1 1.5997 -2.3429 3.2966 47 1 1.5471 -3.8332 2.3244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929405719.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:01 Heat of formation + Delta-G solvation = -84.055140 kcal Electronic energy + Delta-G solvation = -26418.112346 eV Core-core repulsion = 22757.547721 eV Total energy + Delta-G solvation = -3660.564624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.44067 -39.06669 -37.23752 -35.58731 -34.44803 -33.79195 -32.78490 -30.24231 -29.52337 -28.98793 -27.41192 -26.07628 -24.60757 -23.73155 -21.88376 -21.21137 -20.46806 -20.33098 -19.30833 -17.29077 -17.15898 -16.58701 -16.27295 -15.99380 -15.11351 -15.06530 -14.65425 -14.47895 -14.02246 -13.88569 -13.76131 -13.55260 -13.18001 -12.86370 -12.77494 -12.57129 -12.34770 -12.07946 -11.87870 -11.72079 -11.52041 -11.45229 -11.36386 -11.20615 -11.12672 -11.00231 -10.92967 -10.64381 -10.49759 -10.36073 -9.94956 -9.89051 -9.72798 -9.36701 -8.97322 -8.70852 -7.52673 -6.88677 -6.58868 -4.32936 2.58033 3.01088 3.09580 3.10564 3.12830 3.32098 3.54841 3.70130 3.99167 4.43712 4.64854 4.66680 4.70158 4.76616 4.84680 4.88090 5.08702 5.11041 5.22144 5.33596 5.43268 5.46019 5.47551 5.50779 5.65774 5.67001 5.70943 5.78186 5.84294 5.95518 6.00340 6.10969 6.12749 6.16473 6.27946 6.38505 6.79782 7.00013 7.04622 7.08813 7.20362 7.30167 7.63449 7.67778 7.98019 8.09355 8.19937 8.34093 8.67102 8.77360 8.93693 9.01830 10.32142 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024625 B = 0.002575 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.785850 B =10869.555357 C =11687.358485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.150 4.150 4 C 0.096 3.904 5 H 0.057 0.943 6 C -0.130 4.130 7 C -0.107 4.107 8 H 0.092 0.908 9 C 0.503 3.497 10 O -0.524 6.524 11 N -0.653 5.653 12 C 0.005 3.995 13 C -0.114 4.114 14 C -0.204 4.204 15 C 0.100 3.900 16 C -0.464 4.464 17 H 0.075 0.925 18 C 0.069 3.931 19 N -0.808 5.808 20 Si 0.916 3.084 21 H -0.267 1.267 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.144 4.144 25 C -0.094 4.094 26 C -0.147 4.147 27 C 0.066 3.934 28 O -0.378 6.378 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.393 0.607 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.279 0.721 42 H 0.130 0.870 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.050 0.950 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.640 1.690 1.907 19.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 C -0.208 4.208 4 C 0.039 3.961 5 H 0.075 0.925 6 C -0.168 4.168 7 C -0.129 4.129 8 H 0.110 0.890 9 C 0.289 3.711 10 O -0.400 6.400 11 N -0.296 5.296 12 C -0.087 4.087 13 C -0.134 4.134 14 C -0.224 4.224 15 C 0.097 3.903 16 C -0.494 4.494 17 H 0.093 0.907 18 C -0.147 4.147 19 N -0.435 5.435 20 Si 0.741 3.259 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.164 4.164 25 C -0.114 4.114 26 C -0.185 4.185 27 C -0.011 4.011 28 O -0.297 6.297 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.227 0.773 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.148 0.852 43 H 0.125 0.875 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.068 0.932 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.278 2.121 0.858 19.414 hybrid contribution 0.835 -0.395 0.484 1.043 sum -18.443 1.727 1.342 18.572 Atomic orbital electron populations 1.21766 0.94716 1.02264 1.01248 1.21086 0.96296 0.95797 0.97473 1.21898 1.01931 0.94967 1.01971 1.22189 0.92796 0.82996 0.98143 0.92545 1.22086 0.94862 1.01659 0.98175 1.21357 0.92851 0.97837 1.00841 0.88971 1.20438 0.89104 0.79442 0.82096 1.90709 1.69177 1.44965 1.35177 1.43007 1.06960 1.56953 1.22648 1.17296 0.80609 0.97532 1.13307 1.20070 0.95207 0.94694 1.03439 1.20687 0.92450 0.99232 1.10052 1.17721 0.93471 0.89830 0.89237 1.19442 0.92135 1.31913 1.05946 0.90688 1.25896 1.00545 0.93004 0.95212 1.69782 1.37573 1.26306 1.09800 0.86253 0.81924 0.79461 0.78299 1.19137 1.20423 1.19073 1.21307 0.92717 0.98813 1.03607 1.20638 0.94087 0.97116 0.99513 1.22200 0.96706 0.95709 1.03916 1.22531 0.93360 0.96482 0.88745 1.87910 1.74533 1.23448 1.43777 0.93046 0.92862 0.91900 0.90311 0.92606 0.91696 0.92159 0.89906 0.90036 0.77347 0.89217 0.88554 0.91017 0.85220 0.87537 0.90264 0.90365 0.93170 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.05 37.16 0.34 -0.85 16 2 C -0.09 -0.83 2.72 -90.61 -0.25 -1.08 16 3 C -0.15 -1.29 8.84 37.16 0.33 -0.96 16 4 C 0.10 0.99 2.22 -26.68 -0.06 0.93 16 5 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 6 C -0.13 -1.60 3.59 -26.59 -0.10 -1.70 16 7 C -0.11 -1.31 2.61 -91.59 -0.24 -1.55 16 8 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 9 C 0.50 8.72 6.99 -10.98 -0.08 8.64 16 10 O -0.52 -11.53 13.38 5.56 0.07 -11.46 16 11 N -0.65 -11.27 5.20 -9.74 -0.05 -11.32 16 12 C 0.00 0.10 6.31 -83.57 -0.53 -0.42 16 13 C -0.11 -2.49 9.90 -39.79 -0.39 -2.88 16 14 C -0.20 -4.96 9.74 -39.26 -0.38 -5.34 16 15 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 16 C -0.46 -12.45 9.02 -37.85 -0.34 -12.79 16 17 H 0.07 1.91 7.85 -52.49 -0.41 1.50 16 18 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 19 N -0.81 -21.75 10.61 55.55 0.59 -21.16 16 20 Si 0.92 19.25 29.56 -169.99 -5.03 14.22 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 C -0.14 -3.91 8.61 -39.26 -0.34 -4.25 16 25 C -0.09 -2.35 8.61 -39.79 -0.34 -2.69 16 26 C -0.15 -1.53 5.31 -26.60 -0.14 -1.67 16 27 C 0.07 0.59 6.84 37.20 0.25 0.84 16 28 O -0.38 -4.19 9.74 -35.23 -0.34 -4.53 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.57 7.68 -51.93 -0.40 0.17 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.62 6.49 -51.93 -0.34 0.28 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 1.04 6.57 -51.93 -0.34 0.70 16 37 H 0.08 1.18 8.02 -51.93 -0.42 0.77 16 38 H 0.39 5.21 8.47 -40.82 -0.35 4.87 16 39 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 41 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 42 H 0.13 3.67 6.15 -52.48 -0.32 3.35 16 43 H 0.11 2.69 6.22 -52.48 -0.33 2.36 16 44 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.08 0.68 7.81 -51.93 -0.41 0.28 16 46 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 372.24 15.07 5.61 5.61 Total: -1.00 -30.93 372.24 -9.61 -40.54 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -7.51 Total: 10.06 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -2.95 Total: -21.96 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 0.54 Total: -32.48 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.27 Total: -15.99 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.93 -9.61 -40.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929405719.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.516 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds