Wall clock time and date at job start Tue Mar 31 2020 12:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46967 * 2 1 4 4 C 1.53001 * 109.47157 * 119.99277 * 2 1 3 5 5 H 1.09000 * 109.48444 * 300.03173 * 4 2 1 6 6 C 1.53090 * 109.48323 * 180.02562 * 4 2 1 7 7 C 1.53174 * 109.16289 * 182.39911 * 6 4 2 8 8 H 1.08994 * 109.54847 * 297.02475 * 7 6 4 9 9 C 1.50704 * 109.54069 * 176.84551 * 7 6 4 10 10 O 1.21276 * 120.00117 * 0.02562 * 9 7 6 11 11 N 1.34777 * 119.99701 * 179.97438 * 9 7 6 12 12 C 1.39245 * 119.99486 * 175.70978 * 11 9 7 13 13 C 1.39487 * 119.82883 * 215.28908 * 12 11 9 14 14 C 1.36370 * 120.16573 * 180.02562 * 13 12 11 15 15 C 1.40868 * 119.82954 * 359.97438 * 14 13 12 16 16 C 1.41154 * 120.16225 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00264 * 325.25155 * 16 15 14 18 18 C 1.39911 * 120.00008 * 145.25811 * 16 15 14 19 19 N 1.30868 * 119.99873 * 4.44266 * 18 16 15 20 20 Si 1.86796 * 119.99866 * 184.43954 * 18 16 15 21 21 H 1.48495 * 109.47465 * 60.00134 * 20 18 16 22 22 H 1.48502 * 109.47254 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47289 * 299.99760 * 20 18 16 24 24 C 1.40865 * 119.67490 * 0.25414 * 15 14 13 25 25 C 1.36377 * 119.82512 * 359.50657 * 24 15 14 26 26 C 1.53178 * 109.03664 * 56.98207 * 7 6 4 27 27 C 1.53084 * 109.16255 * 303.01911 * 26 7 6 28 28 O 1.42899 * 109.41961 * 57.61024 * 27 26 7 29 29 H 1.08999 * 109.47371 * 300.00207 * 1 2 3 30 30 H 1.08995 * 109.47095 * 60.00825 * 1 2 3 31 31 H 1.09005 * 109.46785 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47371 * 239.99793 * 2 1 3 33 33 H 1.09004 * 109.46997 * 59.99307 * 3 2 1 34 34 H 1.08997 * 109.47293 * 179.97438 * 3 2 1 35 35 H 1.09007 * 109.46445 * 299.99937 * 3 2 1 36 36 H 1.08999 * 109.51852 * 62.48967 * 6 4 2 37 37 H 1.09001 * 109.57233 * 302.34036 * 6 4 2 38 38 H 0.96994 * 120.00142 * 355.70783 * 11 9 7 39 39 H 1.07992 * 119.91581 * 0.02562 * 13 12 11 40 40 H 1.07997 * 120.08422 * 179.97438 * 14 13 12 41 41 H 0.97008 * 119.99843 * 179.97438 * 19 18 16 42 42 H 1.08005 * 120.09066 * 179.72797 * 24 15 14 43 43 H 1.08008 * 119.91736 * 180.22851 * 25 24 15 44 44 H 1.09006 * 109.52285 * 62.92304 * 26 7 6 45 45 H 1.08999 * 109.52011 * 183.10739 * 26 7 6 46 46 H 1.09001 * 109.48398 * 297.62272 * 27 26 7 47 47 H 1.09004 * 109.48317 * 177.59318 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 1 1.6764 -0.2076 2.1394 6 6 3.5709 -0.7207 1.2499 7 6 4.0735 -1.4958 2.4718 8 1 3.7519 -0.9901 3.3821 9 6 5.5785 -1.5671 2.4394 10 8 6.1907 -1.0491 1.5297 11 7 6.2441 -2.2058 3.4221 12 6 7.6271 -2.3493 3.3469 13 6 8.2318 -3.5085 3.8329 14 6 9.5857 -3.6560 3.7632 15 6 10.3737 -2.6343 3.1980 16 6 11.7757 -2.7794 3.1227 17 1 12.3078 -3.2982 3.9064 18 6 12.4762 -2.2511 2.0329 19 7 11.8446 -1.5477 1.1279 20 14 14.3129 -2.5495 1.8698 21 1 14.5720 -4.0095 1.7890 22 1 14.8144 -1.8884 0.6383 23 1 15.0128 -1.9873 3.0528 24 6 9.7562 -1.4645 2.7136 25 6 8.4007 -1.3334 2.7858 26 6 3.4926 -2.9128 2.4381 27 6 1.9648 -2.8286 2.3916 28 8 1.5654 -2.0691 1.2489 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6765 1.9564 0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8901 36 1 3.9348 0.3058 1.2947 37 1 3.9366 -1.1973 0.3404 38 1 5.7597 -2.5653 4.1817 39 1 7.6262 -4.2910 4.2656 40 1 10.0525 -4.5539 4.1403 41 1 12.3304 -1.1811 0.3725 42 1 10.3543 -0.6750 2.2830 43 1 7.9253 -0.4386 2.4115 44 1 3.8557 -3.4344 1.5525 45 1 3.8006 -3.4540 3.3327 46 1 1.5997 -2.3429 3.2966 47 1 1.5471 -3.8332 2.3244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929405719.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:00 Heat of formation + Delta-G solvation = -101.855417 kcal Electronic energy + Delta-G solvation = -26418.884224 eV Core-core repulsion = 22757.547721 eV Total energy + Delta-G solvation = -3661.336502 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.67056 -40.28375 -38.97936 -36.36008 -36.17878 -34.98076 -34.42998 -31.45329 -31.07651 -30.79477 -28.17029 -27.39358 -26.06063 -24.61836 -23.39775 -22.94636 -21.87985 -21.15006 -20.67905 -19.24130 -18.53217 -17.81206 -17.37367 -17.15325 -16.78522 -16.25838 -15.79248 -15.52159 -15.43377 -15.21050 -14.82324 -14.64396 -14.58536 -14.31678 -14.05025 -13.90910 -13.59645 -13.46060 -13.30471 -12.98526 -12.84886 -12.70335 -12.68060 -12.40007 -12.32209 -12.17439 -11.99119 -11.78866 -11.74437 -11.69623 -11.45091 -11.24361 -11.13250 -10.79460 -10.58402 -10.28142 -9.47084 -8.76118 -8.50867 -6.34270 0.79937 1.11266 1.37481 1.44916 1.50570 1.76674 2.22026 2.30726 2.80607 2.82903 3.53678 3.61507 3.68643 3.76963 3.90800 4.05545 4.10119 4.27816 4.33391 4.39862 4.42508 4.45932 4.50896 4.62611 4.71344 4.78581 4.80100 4.83889 4.97721 5.01101 5.04462 5.06043 5.11265 5.13900 5.16727 5.23368 5.28840 5.33165 5.41875 5.42769 5.49508 5.69574 5.85718 6.06923 6.13475 6.33907 6.34388 6.68598 6.71540 6.94651 7.00950 7.40171 8.41972 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024625 B = 0.002575 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.785850 B =10869.555357 C =11687.358485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 C -0.148 4.148 4 C 0.103 3.897 5 H 0.077 0.923 6 C -0.128 4.128 7 C -0.096 4.096 8 H 0.128 0.872 9 C 0.500 3.500 10 O -0.577 6.577 11 N -0.642 5.642 12 C 0.020 3.980 13 C -0.107 4.107 14 C -0.210 4.210 15 C 0.065 3.935 16 C -0.497 4.497 17 H 0.080 0.920 18 C 0.021 3.979 19 N -0.848 5.848 20 Si 0.991 3.009 21 H -0.259 1.259 22 H -0.274 1.274 23 H -0.257 1.257 24 C -0.169 4.169 25 C -0.110 4.110 26 C -0.144 4.144 27 C 0.064 3.936 28 O -0.394 6.394 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.419 0.581 39 H 0.138 0.862 40 H 0.113 0.887 41 H 0.282 0.718 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.053 0.947 45 H 0.103 0.897 46 H 0.076 0.924 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.907 0.424 3.811 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 C -0.205 4.205 4 C 0.046 3.954 5 H 0.095 0.905 6 C -0.166 4.166 7 C -0.117 4.117 8 H 0.146 0.854 9 C 0.288 3.712 10 O -0.456 6.456 11 N -0.287 5.287 12 C -0.073 4.073 13 C -0.127 4.127 14 C -0.230 4.230 15 C 0.062 3.938 16 C -0.527 4.527 17 H 0.099 0.901 18 C -0.190 4.190 19 N -0.476 5.476 20 Si 0.812 3.188 21 H -0.183 1.183 22 H -0.199 1.199 23 H -0.181 1.181 24 C -0.190 4.190 25 C -0.130 4.130 26 C -0.182 4.182 27 C -0.012 4.012 28 O -0.313 6.313 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.256 0.744 39 H 0.155 0.845 40 H 0.131 0.869 41 H 0.092 0.908 42 H 0.121 0.879 43 H 0.113 0.887 44 H 0.072 0.928 45 H 0.122 0.878 46 H 0.094 0.906 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -21.598 0.835 2.805 21.796 hybrid contribution 1.370 0.004 -0.099 1.373 sum -20.228 0.839 2.707 20.426 Atomic orbital electron populations 1.21710 0.93396 1.02063 1.02215 1.21110 0.97339 0.95936 0.96559 1.21873 1.00828 0.94746 1.03051 1.22168 0.90769 0.83239 0.99240 0.90478 1.22056 0.96788 1.00853 0.96933 1.21393 0.88391 0.99749 1.02164 0.85403 1.21450 0.91279 0.77579 0.80844 1.90703 1.70792 1.46915 1.37203 1.42913 1.05019 1.56948 1.23817 1.17373 0.82827 0.96426 1.10708 1.20452 0.94745 0.95316 1.02210 1.20971 0.93597 0.99062 1.09337 1.18069 0.94410 0.90625 0.90675 1.19743 0.92692 1.33372 1.06937 0.90148 1.26874 1.05545 0.92220 0.94386 1.69913 1.39567 1.27578 1.10552 0.85113 0.75541 0.79578 0.78569 1.18324 1.19856 1.18079 1.21174 0.93526 0.98941 1.05341 1.20659 0.93763 0.97983 1.00577 1.22231 0.97979 0.93991 1.03956 1.22729 0.91897 0.97526 0.89061 1.87908 1.74498 1.23767 1.45161 0.91916 0.92081 0.92632 0.92127 0.91297 0.93384 0.91331 0.90709 0.93345 0.74360 0.84469 0.86880 0.90782 0.87877 0.88685 0.92840 0.87815 0.90568 0.86931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.05 71.98 0.65 -1.35 16 2 C -0.09 -1.63 2.72 -10.79 -0.03 -1.66 16 3 C -0.15 -2.41 8.84 71.98 0.64 -1.78 16 4 C 0.10 1.94 2.22 30.62 0.07 2.00 16 5 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 6 C -0.13 -3.11 3.59 30.68 0.11 -3.00 16 7 C -0.10 -2.13 2.61 -11.42 -0.03 -2.16 16 8 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 9 C 0.50 16.92 6.99 87.66 0.61 17.53 16 10 O -0.58 -26.24 13.38 -3.02 -0.04 -26.28 16 11 N -0.64 -20.79 5.20 -303.11 -1.58 -22.36 16 12 C 0.02 0.88 6.31 38.56 0.24 1.12 16 13 C -0.11 -4.45 9.90 22.13 0.22 -4.23 16 14 C -0.21 -10.07 9.74 22.48 0.22 -9.85 16 15 C 0.06 3.60 5.55 -21.28 -0.12 3.48 16 16 C -0.50 -27.52 9.02 23.39 0.21 -27.31 16 17 H 0.08 4.18 7.85 -2.91 -0.02 4.16 16 18 C 0.02 1.12 5.42 85.24 0.46 1.58 16 19 N -0.85 -48.04 10.61 21.82 0.23 -47.81 16 20 Si 0.99 40.23 29.56 68.60 2.03 42.25 16 21 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 22 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 23 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 24 C -0.17 -9.70 8.61 22.48 0.19 -9.51 16 25 C -0.11 -5.71 8.61 22.13 0.19 -5.51 16 26 C -0.14 -2.55 5.31 30.68 0.16 -2.39 16 27 C 0.06 0.90 6.84 72.01 0.49 1.39 16 28 O -0.39 -7.81 9.74 -148.98 -1.45 -9.26 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.90 7.68 -2.38 -0.02 0.88 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 0.94 6.49 -2.39 -0.02 0.92 16 35 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.07 1.91 6.57 -2.39 -0.02 1.90 16 37 H 0.05 1.48 8.02 -2.39 -0.02 1.46 16 38 H 0.42 9.37 8.47 -92.71 -0.79 8.59 16 39 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 40 H 0.11 4.95 8.06 -2.91 -0.02 4.92 16 41 H 0.28 14.69 8.30 -92.70 -0.77 13.92 16 42 H 0.10 6.33 6.15 -2.91 -0.02 6.31 16 43 H 0.10 5.08 6.22 -2.91 -0.02 5.06 16 44 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.10 1.32 7.81 -2.39 -0.02 1.30 16 46 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -72.62 372.24 3.67 -68.95 By element: Atomic # 1 Polarization: 35.97 SS G_CDS: 0.18 Total: 36.14 kcal Atomic # 6 Polarization: -45.93 SS G_CDS: 4.30 Total: -41.64 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: -1.34 Total: -70.17 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -1.49 Total: -35.54 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.25 kcal Total: -72.62 3.67 -68.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929405719.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.904 kcal (2) G-P(sol) polarization free energy of solvation -72.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds