Wall clock time and date at job start Tue Mar 31 2020 12:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47166 * 2 1 4 4 C 1.53007 * 109.47185 * 119.99793 * 2 1 3 5 5 N 1.46496 * 109.47074 * 175.17586 * 4 2 1 6 6 C 1.46503 * 120.00642 * 275.65813 * 5 4 2 7 7 C 1.50705 * 109.46788 * 288.74397 * 6 5 4 8 8 H 1.08007 * 119.99618 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00141 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99958 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00195 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47120 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47222 * 119.99847 * 11 9 7 14 14 H 1.48499 * 109.47213 * 239.99661 * 11 9 7 15 15 C 1.34776 * 119.99983 * 95.65636 * 5 4 2 16 16 O 1.21560 * 119.99606 * 359.31745 * 15 5 4 17 17 C 1.47842 * 120.00450 * 179.59384 * 15 5 4 18 18 C 1.39465 * 120.01162 * 327.12172 * 17 15 5 19 19 C 1.37936 * 119.69865 * 179.78948 * 18 17 15 20 20 C 1.38207 * 120.05683 * 0.58970 * 19 18 17 21 21 C 1.38756 * 120.61226 * 359.76752 * 20 19 18 22 22 C 1.37667 * 119.86310 * 359.76977 * 21 20 19 23 23 C 1.50716 * 121.41846 * 180.63865 * 22 21 20 24 24 C 1.52972 * 109.78142 * 342.80547 * 23 22 21 25 25 O 1.43211 * 108.47632 * 49.13474 * 24 23 22 26 26 C 1.42717 * 113.13325 * 289.44927 * 25 24 23 27 27 H 1.09006 * 109.46796 * 299.99908 * 1 2 3 28 28 H 1.08992 * 109.47445 * 60.00209 * 1 2 3 29 29 H 1.09002 * 109.47134 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47343 * 239.99746 * 2 1 3 31 31 H 1.09000 * 109.46992 * 185.78590 * 3 2 1 32 32 H 1.08998 * 109.47371 * 305.78637 * 3 2 1 33 33 H 1.09004 * 109.47201 * 65.78961 * 3 2 1 34 34 H 1.09004 * 109.46843 * 55.18014 * 4 2 1 35 35 H 1.08998 * 109.47505 * 295.18093 * 4 2 1 36 36 H 1.09000 * 109.47060 * 48.73233 * 6 5 4 37 37 H 1.08987 * 109.47378 * 168.74390 * 6 5 4 38 38 H 0.96997 * 120.00134 * 180.02562 * 10 9 7 39 39 H 1.08002 * 120.14770 * 0.03274 * 18 17 15 40 40 H 1.08001 * 119.96946 * 180.32187 * 19 18 17 41 41 H 1.08001 * 119.69745 * 179.74955 * 20 19 18 42 42 H 1.08996 * 109.42135 * 102.90400 * 23 22 21 43 43 H 1.09004 * 109.41911 * 222.71517 * 23 22 21 44 44 H 1.08991 * 109.63731 * 289.43265 * 24 23 22 45 45 H 1.08998 * 109.79926 * 168.92123 * 24 23 22 46 46 H 1.09006 * 109.33871 * 291.63065 * 26 25 24 47 47 H 1.08997 * 109.34164 * 172.11219 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5004 -0.8226 1.1926 6 6 4.1305 -1.9211 0.4559 7 6 3.9253 -3.2119 1.2062 8 1 3.3804 -3.2136 2.1388 9 6 4.4332 -4.3904 0.7022 10 7 5.0962 -4.3883 -0.4336 11 14 4.1795 -5.9903 1.6325 12 1 3.4075 -5.7245 2.8730 13 1 3.4304 -6.9464 0.7781 14 1 5.4993 -6.5717 1.9864 15 6 4.2644 0.0947 1.8182 16 8 3.7417 1.0131 2.4191 17 6 5.7380 -0.0126 1.7686 18 6 6.3451 -1.2675 1.7267 19 6 7.7204 -1.3600 1.6761 20 6 8.4919 -0.2134 1.6794 21 6 7.8963 1.0389 1.7285 22 6 6.5242 1.1442 1.7697 23 6 5.8402 2.4866 1.8092 24 6 6.8421 3.5663 2.2221 25 8 8.0196 3.4235 1.4195 26 6 8.7798 2.2594 1.7414 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1251 1.4442 -0.1036 32 1 1.5946 1.9854 -0.8336 33 1 1.7638 1.9255 0.9373 34 1 1.6079 -1.7210 1.2935 35 1 1.7489 -0.1600 2.1372 36 1 3.6800 -2.0005 -0.5335 37 1 5.1979 -1.7254 0.3546 38 1 5.4531 -5.2175 -0.7883 39 1 5.7409 -2.1627 1.7298 40 1 8.1949 -2.3295 1.6382 41 1 9.5684 -0.2927 1.6438 42 1 5.4423 2.7199 0.8217 43 1 5.0231 2.4558 2.5301 44 1 7.0990 3.4445 3.2742 45 1 6.4078 4.5532 2.0628 46 1 9.2181 2.3772 2.7325 47 1 9.5775 2.1352 1.0090 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930901529.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:22 Heat of formation + Delta-G solvation = -54.512005 kcal Electronic energy + Delta-G solvation = -28074.178132 eV Core-core repulsion = 24414.894594 eV Total energy + Delta-G solvation = -3659.283538 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.43610 -38.93035 -37.10839 -35.99160 -34.35359 -32.57445 -32.42059 -31.33412 -29.37051 -27.66226 -26.78043 -25.94848 -25.22074 -23.55526 -23.25220 -22.33731 -19.89492 -19.82877 -18.66853 -16.74695 -16.63943 -16.27145 -16.00717 -15.60376 -15.29969 -15.00335 -14.62782 -14.57953 -14.26230 -13.70348 -13.60271 -13.39109 -13.04028 -12.80446 -12.50984 -12.42812 -12.17968 -12.08760 -11.97738 -11.87572 -11.34993 -11.30684 -11.28338 -11.12672 -11.01293 -10.79751 -10.58792 -10.49475 -10.33613 -10.14016 -10.04472 -9.74369 -9.60584 -8.87998 -8.73308 -8.31333 -8.04802 -7.69793 -6.30157 -4.39373 1.40203 1.75533 3.14290 3.23962 3.27473 3.42071 3.86002 3.96596 4.20153 4.31765 4.90076 4.95047 5.00928 5.09799 5.23668 5.29311 5.33974 5.35835 5.42571 5.46091 5.51550 5.55402 5.65562 5.91295 5.97780 6.01500 6.03909 6.07054 6.11209 6.18536 6.20789 6.30356 6.35802 6.38966 6.44059 6.47313 6.65952 6.71644 6.80954 6.83681 6.95701 7.04026 7.18573 7.19822 7.37786 7.49252 7.63570 7.91484 8.32995 8.68643 8.95699 9.29087 10.75113 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010617 B = 0.005758 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.645687 B = 4861.504954 C = 7014.669562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 C -0.135 4.135 4 C 0.125 3.875 5 N -0.583 5.583 6 C 0.212 3.788 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.069 3.931 10 N -0.882 5.882 11 Si 0.895 3.105 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.281 1.281 15 C 0.558 3.442 16 O -0.565 6.565 17 C -0.136 4.136 18 C -0.073 4.073 19 C -0.136 4.136 20 C -0.094 4.094 21 C -0.153 4.153 22 C -0.021 4.021 23 C -0.131 4.131 24 C 0.061 3.939 25 O -0.381 6.381 26 C 0.110 3.890 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.029 0.971 37 H 0.065 0.935 38 H 0.267 0.733 39 H 0.183 0.817 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.078 0.922 43 H 0.122 0.878 44 H 0.052 0.948 45 H 0.095 0.905 46 H 0.059 0.941 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.309 9.375 2.495 9.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.132 4.132 3 C -0.192 4.192 4 C 0.002 3.998 5 N -0.311 5.311 6 C 0.092 3.908 7 C -0.581 4.581 8 H 0.083 0.917 9 C -0.136 4.136 10 N -0.519 5.519 11 Si 0.722 3.278 12 H -0.195 1.195 13 H -0.207 1.207 14 H -0.207 1.207 15 C 0.347 3.653 16 O -0.448 6.448 17 C -0.139 4.139 18 C -0.091 4.091 19 C -0.154 4.154 20 C -0.112 4.112 21 C -0.154 4.154 22 C -0.022 4.022 23 C -0.167 4.167 24 C -0.016 4.016 25 O -0.300 6.300 26 C 0.033 3.967 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.047 0.953 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.200 0.800 40 H 0.143 0.857 41 H 0.137 0.863 42 H 0.096 0.904 43 H 0.140 0.860 44 H 0.071 0.929 45 H 0.113 0.887 46 H 0.077 0.923 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.163 9.828 2.501 10.369 hybrid contribution -0.061 -1.519 0.362 1.563 sum 2.102 8.309 2.863 9.036 Atomic orbital electron populations 1.21739 0.95252 1.01574 1.01273 1.21478 0.95276 0.96812 0.99604 1.21739 1.00870 0.95624 1.00960 1.21387 0.80409 1.00748 0.97289 1.48069 1.05905 1.26833 1.50267 1.20143 0.95546 0.83197 0.91893 1.21461 1.36578 0.91764 1.08282 0.91707 1.24972 0.94592 0.99181 0.94848 1.69946 1.35180 1.28026 1.18717 0.86476 0.78243 0.83042 0.80028 1.19526 1.20723 1.20663 1.18226 0.86450 0.81698 0.78889 1.90549 1.74457 1.34133 1.45651 1.19862 0.93456 0.93696 1.06838 1.22774 0.95750 0.99380 0.91149 1.21089 0.94062 0.98219 1.02045 1.21070 0.99465 0.91859 0.98807 1.19991 0.93774 0.95668 1.05939 1.19372 0.92088 0.94417 0.96323 1.21468 0.99613 0.91017 1.04615 1.22675 0.85427 0.99181 0.94285 1.88013 1.37693 1.43053 1.61199 1.21302 0.92392 0.82246 1.00729 0.92888 0.93009 0.92631 0.91061 0.93186 0.93930 0.92373 0.90244 0.90797 0.95260 0.91739 0.92328 0.80024 0.85661 0.86328 0.90404 0.86039 0.92935 0.88671 0.92344 0.88253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.19 37.16 0.34 -1.53 16 2 C -0.11 -1.82 3.12 -90.62 -0.28 -2.11 16 3 C -0.13 -2.16 8.01 37.16 0.30 -1.87 16 4 C 0.12 2.31 4.89 -4.04 -0.02 2.29 16 5 N -0.58 -12.14 2.33 -176.17 -0.41 -12.55 16 6 C 0.21 4.90 4.71 -5.19 -0.02 4.87 16 7 C -0.54 -13.34 7.15 -34.44 -0.25 -13.59 16 8 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 9 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 10 N -0.88 -23.04 13.29 55.43 0.74 -22.30 16 11 Si 0.89 19.58 29.54 -169.99 -5.02 14.56 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 15 C 0.56 11.64 5.94 -12.33 -0.07 11.57 16 16 O -0.57 -11.95 12.31 5.31 0.07 -11.89 16 17 C -0.14 -2.72 5.44 -104.90 -0.57 -3.29 16 18 C -0.07 -1.47 7.35 -39.24 -0.29 -1.76 16 19 C -0.14 -2.37 10.03 -39.70 -0.40 -2.77 16 20 C -0.09 -1.43 9.66 -39.40 -0.38 -1.81 16 21 C -0.15 -2.44 5.80 -104.65 -0.61 -3.05 16 22 C -0.02 -0.38 5.80 -104.21 -0.60 -0.98 16 23 C -0.13 -2.12 5.16 -27.89 -0.14 -2.26 16 24 C 0.06 0.82 6.85 37.14 0.25 1.07 16 25 O -0.38 -5.56 10.80 -35.23 -0.38 -5.94 16 26 C 0.11 1.44 6.66 36.00 0.24 1.68 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.25 7.96 -51.93 -0.41 0.84 16 31 H 0.05 0.90 6.98 -51.93 -0.36 0.54 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 34 H 0.08 1.50 7.75 -51.93 -0.40 1.09 16 35 H 0.07 1.37 7.27 -51.93 -0.38 0.99 16 36 H 0.03 0.73 7.96 -51.93 -0.41 0.32 16 37 H 0.07 1.55 4.03 -51.94 -0.21 1.34 16 38 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 39 H 0.18 4.10 4.07 -52.49 -0.21 3.88 16 40 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 41 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.12 2.12 5.55 -51.93 -0.29 1.83 16 44 H 0.05 0.65 8.07 -51.93 -0.42 0.24 16 45 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 365.77 15.07 5.51 5.51 Total: -1.00 -27.08 365.77 -9.39 -36.46 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -7.28 Total: 8.04 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -2.60 Total: -11.90 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.33 Total: -34.85 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.32 Total: -17.83 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.08 -9.39 -36.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930901529.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.047 kcal (2) G-P(sol) polarization free energy of solvation -27.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds