Wall clock time and date at job start Tue Mar 31 2020 12:41:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52997 * 109.47166 * 2 1
4 4 C 1.53007 * 109.47185 * 119.99793 * 2 1 3
5 5 N 1.46496 * 109.47074 * 175.17586 * 4 2 1
6 6 C 1.46503 * 120.00642 * 275.65813 * 5 4 2
7 7 C 1.50705 * 109.46788 * 288.74397 * 6 5 4
8 8 H 1.08007 * 119.99618 * 359.97438 * 7 6 5
9 9 C 1.37874 * 120.00141 * 179.97438 * 7 6 5
10 10 N 1.31514 * 119.99958 * 359.97438 * 9 7 6
11 11 Si 1.86798 * 120.00195 * 179.97438 * 9 7 6
12 12 H 1.48498 * 109.47120 * 359.97438 * 11 9 7
13 13 H 1.48503 * 109.47222 * 119.99847 * 11 9 7
14 14 H 1.48499 * 109.47213 * 239.99661 * 11 9 7
15 15 C 1.34776 * 119.99983 * 95.65636 * 5 4 2
16 16 O 1.21560 * 119.99606 * 359.31745 * 15 5 4
17 17 C 1.47842 * 120.00450 * 179.59384 * 15 5 4
18 18 C 1.39465 * 120.01162 * 327.12172 * 17 15 5
19 19 C 1.37936 * 119.69865 * 179.78948 * 18 17 15
20 20 C 1.38207 * 120.05683 * 0.58970 * 19 18 17
21 21 C 1.38756 * 120.61226 * 359.76752 * 20 19 18
22 22 C 1.37667 * 119.86310 * 359.76977 * 21 20 19
23 23 C 1.50716 * 121.41846 * 180.63865 * 22 21 20
24 24 C 1.52972 * 109.78142 * 342.80547 * 23 22 21
25 25 O 1.43211 * 108.47632 * 49.13474 * 24 23 22
26 26 C 1.42717 * 113.13325 * 289.44927 * 25 24 23
27 27 H 1.09006 * 109.46796 * 299.99908 * 1 2 3
28 28 H 1.08992 * 109.47445 * 60.00209 * 1 2 3
29 29 H 1.09002 * 109.47134 * 180.02562 * 1 2 3
30 30 H 1.08998 * 109.47343 * 239.99746 * 2 1 3
31 31 H 1.09000 * 109.46992 * 185.78590 * 3 2 1
32 32 H 1.08998 * 109.47371 * 305.78637 * 3 2 1
33 33 H 1.09004 * 109.47201 * 65.78961 * 3 2 1
34 34 H 1.09004 * 109.46843 * 55.18014 * 4 2 1
35 35 H 1.08998 * 109.47505 * 295.18093 * 4 2 1
36 36 H 1.09000 * 109.47060 * 48.73233 * 6 5 4
37 37 H 1.08987 * 109.47378 * 168.74390 * 6 5 4
38 38 H 0.96997 * 120.00134 * 180.02562 * 10 9 7
39 39 H 1.08002 * 120.14770 * 0.03274 * 18 17 15
40 40 H 1.08001 * 119.96946 * 180.32187 * 19 18 17
41 41 H 1.08001 * 119.69745 * 179.74955 * 20 19 18
42 42 H 1.08996 * 109.42135 * 102.90400 * 23 22 21
43 43 H 1.09004 * 109.41911 * 222.71517 * 23 22 21
44 44 H 1.08991 * 109.63731 * 289.43265 * 24 23 22
45 45 H 1.08998 * 109.79926 * 168.92123 * 24 23 22
46 46 H 1.09006 * 109.33871 * 291.63065 * 26 25 24
47 47 H 1.08997 * 109.34164 * 172.11219 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 1.2493
5 7 3.5004 -0.8226 1.1926
6 6 4.1305 -1.9211 0.4559
7 6 3.9253 -3.2119 1.2062
8 1 3.3804 -3.2136 2.1388
9 6 4.4332 -4.3904 0.7022
10 7 5.0962 -4.3883 -0.4336
11 14 4.1795 -5.9903 1.6325
12 1 3.4075 -5.7245 2.8730
13 1 3.4304 -6.9464 0.7781
14 1 5.4993 -6.5717 1.9864
15 6 4.2644 0.0947 1.8182
16 8 3.7417 1.0131 2.4191
17 6 5.7380 -0.0126 1.7686
18 6 6.3451 -1.2675 1.7267
19 6 7.7204 -1.3600 1.6761
20 6 8.4919 -0.2134 1.6794
21 6 7.8963 1.0389 1.7285
22 6 6.5242 1.1442 1.7697
23 6 5.8402 2.4866 1.8092
24 6 6.8421 3.5663 2.2221
25 8 8.0196 3.4235 1.4195
26 6 8.7798 2.2594 1.7414
27 1 -0.3633 0.5139 0.8901
28 1 -0.3634 0.5138 -0.8899
29 1 -0.3633 -1.0277 0.0005
30 1 1.8934 -0.5139 -0.8899
31 1 3.1251 1.4442 -0.1036
32 1 1.5946 1.9854 -0.8336
33 1 1.7638 1.9255 0.9373
34 1 1.6079 -1.7210 1.2935
35 1 1.7489 -0.1600 2.1372
36 1 3.6800 -2.0005 -0.5335
37 1 5.1979 -1.7254 0.3546
38 1 5.4531 -5.2175 -0.7883
39 1 5.7409 -2.1627 1.7298
40 1 8.1949 -2.3295 1.6382
41 1 9.5684 -0.2927 1.6438
42 1 5.4423 2.7199 0.8217
43 1 5.0231 2.4558 2.5301
44 1 7.0990 3.4445 3.2742
45 1 6.4078 4.5532 2.0628
46 1 9.2181 2.3772 2.7325
47 1 9.5775 2.1352 1.0090
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000930901529.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:41:21
Heat of formation + Delta-G solvation = -67.514078 kcal
Electronic energy + Delta-G solvation = -28074.741944 eV
Core-core repulsion = 24414.894594 eV
Total energy + Delta-G solvation = -3659.847350 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.178 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.86068 -40.31825 -38.37244 -37.55131 -35.93567 -34.28176 -33.81758 -32.65924
-30.63234 -29.48925 -28.06167 -27.39326 -26.43194 -25.09333 -24.72286 -23.80665
-21.27322 -21.11852 -20.23736 -18.57669 -18.13829 -17.68591 -17.29865 -16.98461
-16.65370 -16.36403 -16.20015 -16.10654 -15.61710 -15.10997 -14.99497 -14.72803
-14.42077 -14.28515 -14.11750 -13.84610 -13.60887 -13.53291 -13.18300 -13.12261
-12.87871 -12.80262 -12.65184 -12.59622 -12.50082 -12.25163 -12.22569 -11.86476
-11.78729 -11.59872 -11.56674 -11.46799 -10.86896 -10.64349 -10.35150 -9.72915
-9.45322 -9.37656 -8.23856 -6.39534 -0.00695 0.38468 1.38645 1.42756
1.52673 1.87484 2.25466 2.41232 2.81408 2.96164 3.04963 3.63107
3.74313 3.75294 3.92873 3.99314 4.04102 4.16480 4.18976 4.24941
4.42934 4.48145 4.51948 4.60152 4.65466 4.69633 4.77525 4.83886
4.86063 4.87946 4.91284 4.94853 4.98149 5.02195 5.04388 5.15882
5.18298 5.22262 5.38857 5.43089 5.45764 5.56889 5.62856 5.64525
5.79877 5.98379 6.02474 6.14188 6.56905 6.77396 7.24961 7.36517
8.81319
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.010617 B = 0.005758 C = 0.003991
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2636.645687 B = 4861.504954 C = 7014.669562
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.108 4.108
3 C -0.124 4.124
4 C 0.122 3.878
5 N -0.588 5.588
6 C 0.229 3.771
7 C -0.546 4.546
8 H 0.054 0.946
9 C 0.030 3.970
10 N -0.910 5.910
11 Si 0.955 3.045
12 H -0.272 1.272
13 H -0.278 1.278
14 H -0.275 1.275
15 C 0.554 3.446
16 O -0.574 6.574
17 C -0.162 4.162
18 C -0.097 4.097
19 C -0.143 4.143
20 C -0.079 4.079
21 C -0.150 4.150
22 C -0.037 4.037
23 C -0.126 4.126
24 C 0.066 3.934
25 O -0.392 6.392
26 C 0.107 3.893
27 H 0.062 0.938
28 H 0.070 0.930
29 H 0.057 0.943
30 H 0.053 0.947
31 H 0.022 0.978
32 H 0.065 0.935
33 H 0.054 0.946
34 H 0.071 0.929
35 H 0.073 0.927
36 H 0.003 0.997
37 H 0.059 0.941
38 H 0.270 0.730
39 H 0.153 0.847
40 H 0.137 0.863
41 H 0.164 0.836
42 H 0.065 0.935
43 H 0.105 0.895
44 H 0.065 0.935
45 H 0.117 0.883
46 H 0.086 0.914
47 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.706 10.396 2.981 11.433
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.128 4.128
3 C -0.182 4.182
4 C 0.000 4.000
5 N -0.316 5.316
6 C 0.109 3.891
7 C -0.584 4.584
8 H 0.073 0.927
9 C -0.172 4.172
10 N -0.548 5.548
11 Si 0.780 3.220
12 H -0.196 1.196
13 H -0.204 1.204
14 H -0.200 1.200
15 C 0.344 3.656
16 O -0.457 6.457
17 C -0.164 4.164
18 C -0.115 4.115
19 C -0.161 4.161
20 C -0.097 4.097
21 C -0.150 4.150
22 C -0.038 4.038
23 C -0.163 4.163
24 C -0.010 4.010
25 O -0.310 6.310
26 C 0.031 3.969
27 H 0.081 0.919
28 H 0.089 0.911
29 H 0.077 0.923
30 H 0.072 0.928
31 H 0.041 0.959
32 H 0.084 0.916
33 H 0.073 0.927
34 H 0.089 0.911
35 H 0.091 0.909
36 H 0.021 0.979
37 H 0.076 0.924
38 H 0.079 0.921
39 H 0.170 0.830
40 H 0.154 0.846
41 H 0.181 0.819
42 H 0.083 0.917
43 H 0.123 0.877
44 H 0.084 0.916
45 H 0.135 0.865
46 H 0.103 0.897
47 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges 3.549 10.859 2.993 11.810
hybrid contribution -0.448 -1.790 0.226 1.859
sum 3.101 9.069 3.219 10.111
Atomic orbital electron populations
1.21688 0.92430 1.02274 1.02686 1.21435 0.97565 0.96347 0.97413
1.21636 0.99182 0.95650 1.01707 1.21510 0.79335 1.00618 0.98553
1.48072 1.06832 1.26448 1.50236 1.19787 0.95093 0.83593 0.90649
1.21524 1.36349 0.92651 1.07871 0.92745 1.25608 0.94233 1.01835
0.95481 1.70030 1.36018 1.28850 1.19916 0.85556 0.78248 0.79489
0.78730 1.19615 1.20390 1.19992 1.18495 0.87192 0.81384 0.78522
1.90525 1.74902 1.34280 1.46004 1.19937 0.93009 0.94687 1.08814
1.22518 0.97036 0.98347 0.93613 1.21286 0.93065 0.99900 1.01888
1.21484 1.01451 0.90541 0.96226 1.20479 0.93225 0.97490 1.03844
1.19689 0.93301 0.94309 0.96543 1.21394 0.99999 0.91463 1.03435
1.22724 0.84513 0.99020 0.94761 1.88010 1.37839 1.43456 1.61728
1.21585 0.91931 0.80240 1.03135 0.91876 0.91145 0.92341 0.92831
0.95854 0.91569 0.92705 0.91070 0.90872 0.97909 0.92364 0.92100
0.82999 0.84562 0.81893 0.91679 0.87724 0.91626 0.86464 0.89661
0.85670
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.42 9.19 71.98 0.66 -2.76 16
2 C -0.11 -3.60 3.12 -10.79 -0.03 -3.63 16
3 C -0.12 -4.05 8.01 71.98 0.58 -3.48 16
4 C 0.12 4.75 4.89 86.38 0.42 5.17 16
5 N -0.59 -25.96 2.33 -829.56 -1.93 -27.89 16
6 C 0.23 11.27 4.71 85.63 0.40 11.68 16
7 C -0.55 -28.04 7.15 25.60 0.18 -27.85 16
8 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16
9 C 0.03 1.55 5.46 84.65 0.46 2.01 16
10 N -0.91 -48.77 13.29 21.45 0.28 -48.49 16
11 Si 0.95 40.75 29.54 68.60 2.03 42.78 16
12 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16
13 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16
14 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16
15 C 0.55 24.30 5.94 86.79 0.52 24.81 16
16 O -0.57 -25.27 12.31 -3.90 -0.05 -25.31 16
17 C -0.16 -6.72 5.44 -20.04 -0.11 -6.83 16
18 C -0.10 -4.06 7.35 22.49 0.17 -3.89 16
19 C -0.14 -4.92 10.03 22.19 0.22 -4.70 16
20 C -0.08 -2.20 9.66 22.39 0.22 -1.98 16
21 C -0.15 -4.43 5.80 -19.88 -0.12 -4.54 16
22 C -0.04 -1.34 5.80 -19.60 -0.11 -1.45 16
23 C -0.13 -4.08 5.16 29.84 0.15 -3.92 16
24 C 0.07 1.63 6.85 71.97 0.49 2.12 16
25 O -0.39 -10.21 10.80 -148.98 -1.61 -11.82 16
26 C 0.11 2.38 6.66 71.23 0.47 2.86 16
27 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16
28 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16
29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16
30 H 0.05 1.97 7.96 -2.39 -0.02 1.95 16
31 H 0.02 0.86 6.98 -2.39 -0.02 0.84 16
32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16
33 H 0.05 1.80 7.93 -2.38 -0.02 1.78 16
34 H 0.07 2.82 7.75 -2.38 -0.02 2.81 16
35 H 0.07 2.82 7.27 -2.39 -0.02 2.80 16
36 H 0.00 0.16 7.96 -2.39 -0.02 0.14 16
37 H 0.06 2.99 4.03 -2.39 -0.01 2.98 16
38 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16
39 H 0.15 7.26 4.07 -2.91 -0.01 7.25 16
40 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16
41 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16
42 H 0.06 2.22 8.14 -2.39 -0.02 2.21 16
43 H 0.10 3.73 5.55 -2.38 -0.01 3.72 16
44 H 0.07 1.46 8.07 -2.39 -0.02 1.44 16
45 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16
46 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16
47 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16
Total: -1.00 -60.79 365.77 4.26 -56.52
By element:
Atomic # 1 Polarization: 29.65 SS G_CDS: 0.96 Total: 30.61 kcal
Atomic # 6 Polarization: -20.97 SS G_CDS: 4.58 Total: -16.39 kcal
Atomic # 7 Polarization: -74.74 SS G_CDS: -1.64 Total: -76.38 kcal
Atomic # 8 Polarization: -35.48 SS G_CDS: -1.66 Total: -37.14 kcal
Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal
Total: -60.79 4.26 -56.52 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000930901529.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.990 kcal
(2) G-P(sol) polarization free energy of solvation -60.789 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.779 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.524 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.514 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds