Wall clock time and date at job start Tue Mar 31 2020 12:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47166 * 2 1 4 4 C 1.53007 * 109.47185 * 119.99793 * 2 1 3 5 5 N 1.46496 * 109.47074 * 175.17586 * 4 2 1 6 6 C 1.46503 * 120.00642 * 275.65813 * 5 4 2 7 7 C 1.50705 * 109.46788 * 288.74397 * 6 5 4 8 8 H 1.08007 * 119.99618 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00141 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99958 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00195 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47120 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47222 * 119.99847 * 11 9 7 14 14 H 1.48499 * 109.47213 * 239.99661 * 11 9 7 15 15 C 1.34776 * 119.99983 * 95.65636 * 5 4 2 16 16 O 1.21560 * 119.99606 * 359.31745 * 15 5 4 17 17 C 1.47842 * 120.00450 * 179.59384 * 15 5 4 18 18 C 1.39465 * 120.01162 * 327.12172 * 17 15 5 19 19 C 1.37936 * 119.69865 * 179.78948 * 18 17 15 20 20 C 1.38207 * 120.05683 * 0.58970 * 19 18 17 21 21 C 1.38756 * 120.61226 * 359.76752 * 20 19 18 22 22 C 1.37667 * 119.86310 * 359.76977 * 21 20 19 23 23 C 1.50716 * 121.41846 * 180.63865 * 22 21 20 24 24 C 1.52972 * 109.78142 * 342.80547 * 23 22 21 25 25 O 1.43211 * 108.47632 * 49.13474 * 24 23 22 26 26 C 1.42717 * 113.13325 * 289.44927 * 25 24 23 27 27 H 1.09006 * 109.46796 * 299.99908 * 1 2 3 28 28 H 1.08992 * 109.47445 * 60.00209 * 1 2 3 29 29 H 1.09002 * 109.47134 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47343 * 239.99746 * 2 1 3 31 31 H 1.09000 * 109.46992 * 185.78590 * 3 2 1 32 32 H 1.08998 * 109.47371 * 305.78637 * 3 2 1 33 33 H 1.09004 * 109.47201 * 65.78961 * 3 2 1 34 34 H 1.09004 * 109.46843 * 55.18014 * 4 2 1 35 35 H 1.08998 * 109.47505 * 295.18093 * 4 2 1 36 36 H 1.09000 * 109.47060 * 48.73233 * 6 5 4 37 37 H 1.08987 * 109.47378 * 168.74390 * 6 5 4 38 38 H 0.96997 * 120.00134 * 180.02562 * 10 9 7 39 39 H 1.08002 * 120.14770 * 0.03274 * 18 17 15 40 40 H 1.08001 * 119.96946 * 180.32187 * 19 18 17 41 41 H 1.08001 * 119.69745 * 179.74955 * 20 19 18 42 42 H 1.08996 * 109.42135 * 102.90400 * 23 22 21 43 43 H 1.09004 * 109.41911 * 222.71517 * 23 22 21 44 44 H 1.08991 * 109.63731 * 289.43265 * 24 23 22 45 45 H 1.08998 * 109.79926 * 168.92123 * 24 23 22 46 46 H 1.09006 * 109.33871 * 291.63065 * 26 25 24 47 47 H 1.08997 * 109.34164 * 172.11219 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5004 -0.8226 1.1926 6 6 4.1305 -1.9211 0.4559 7 6 3.9253 -3.2119 1.2062 8 1 3.3804 -3.2136 2.1388 9 6 4.4332 -4.3904 0.7022 10 7 5.0962 -4.3883 -0.4336 11 14 4.1795 -5.9903 1.6325 12 1 3.4075 -5.7245 2.8730 13 1 3.4304 -6.9464 0.7781 14 1 5.4993 -6.5717 1.9864 15 6 4.2644 0.0947 1.8182 16 8 3.7417 1.0131 2.4191 17 6 5.7380 -0.0126 1.7686 18 6 6.3451 -1.2675 1.7267 19 6 7.7204 -1.3600 1.6761 20 6 8.4919 -0.2134 1.6794 21 6 7.8963 1.0389 1.7285 22 6 6.5242 1.1442 1.7697 23 6 5.8402 2.4866 1.8092 24 6 6.8421 3.5663 2.2221 25 8 8.0196 3.4235 1.4195 26 6 8.7798 2.2594 1.7414 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1251 1.4442 -0.1036 32 1 1.5946 1.9854 -0.8336 33 1 1.7638 1.9255 0.9373 34 1 1.6079 -1.7210 1.2935 35 1 1.7489 -0.1600 2.1372 36 1 3.6800 -2.0005 -0.5335 37 1 5.1979 -1.7254 0.3546 38 1 5.4531 -5.2175 -0.7883 39 1 5.7409 -2.1627 1.7298 40 1 8.1949 -2.3295 1.6382 41 1 9.5684 -0.2927 1.6438 42 1 5.4423 2.7199 0.8217 43 1 5.0231 2.4558 2.5301 44 1 7.0990 3.4445 3.2742 45 1 6.4078 4.5532 2.0628 46 1 9.2181 2.3772 2.7325 47 1 9.5775 2.1352 1.0090 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930901529.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:21 Heat of formation + Delta-G solvation = -67.514078 kcal Electronic energy + Delta-G solvation = -28074.741944 eV Core-core repulsion = 24414.894594 eV Total energy + Delta-G solvation = -3659.847350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.86068 -40.31825 -38.37244 -37.55131 -35.93567 -34.28176 -33.81758 -32.65924 -30.63234 -29.48925 -28.06167 -27.39326 -26.43194 -25.09333 -24.72286 -23.80665 -21.27322 -21.11852 -20.23736 -18.57669 -18.13829 -17.68591 -17.29865 -16.98461 -16.65370 -16.36403 -16.20015 -16.10654 -15.61710 -15.10997 -14.99497 -14.72803 -14.42077 -14.28515 -14.11750 -13.84610 -13.60887 -13.53291 -13.18300 -13.12261 -12.87871 -12.80262 -12.65184 -12.59622 -12.50082 -12.25163 -12.22569 -11.86476 -11.78729 -11.59872 -11.56674 -11.46799 -10.86896 -10.64349 -10.35150 -9.72915 -9.45322 -9.37656 -8.23856 -6.39534 -0.00695 0.38468 1.38645 1.42756 1.52673 1.87484 2.25466 2.41232 2.81408 2.96164 3.04963 3.63107 3.74313 3.75294 3.92873 3.99314 4.04102 4.16480 4.18976 4.24941 4.42934 4.48145 4.51948 4.60152 4.65466 4.69633 4.77525 4.83886 4.86063 4.87946 4.91284 4.94853 4.98149 5.02195 5.04388 5.15882 5.18298 5.22262 5.38857 5.43089 5.45764 5.56889 5.62856 5.64525 5.79877 5.98379 6.02474 6.14188 6.56905 6.77396 7.24961 7.36517 8.81319 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010617 B = 0.005758 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.645687 B = 4861.504954 C = 7014.669562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.108 4.108 3 C -0.124 4.124 4 C 0.122 3.878 5 N -0.588 5.588 6 C 0.229 3.771 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.030 3.970 10 N -0.910 5.910 11 Si 0.955 3.045 12 H -0.272 1.272 13 H -0.278 1.278 14 H -0.275 1.275 15 C 0.554 3.446 16 O -0.574 6.574 17 C -0.162 4.162 18 C -0.097 4.097 19 C -0.143 4.143 20 C -0.079 4.079 21 C -0.150 4.150 22 C -0.037 4.037 23 C -0.126 4.126 24 C 0.066 3.934 25 O -0.392 6.392 26 C 0.107 3.893 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.022 0.978 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.003 0.997 37 H 0.059 0.941 38 H 0.270 0.730 39 H 0.153 0.847 40 H 0.137 0.863 41 H 0.164 0.836 42 H 0.065 0.935 43 H 0.105 0.895 44 H 0.065 0.935 45 H 0.117 0.883 46 H 0.086 0.914 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.706 10.396 2.981 11.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.128 4.128 3 C -0.182 4.182 4 C 0.000 4.000 5 N -0.316 5.316 6 C 0.109 3.891 7 C -0.584 4.584 8 H 0.073 0.927 9 C -0.172 4.172 10 N -0.548 5.548 11 Si 0.780 3.220 12 H -0.196 1.196 13 H -0.204 1.204 14 H -0.200 1.200 15 C 0.344 3.656 16 O -0.457 6.457 17 C -0.164 4.164 18 C -0.115 4.115 19 C -0.161 4.161 20 C -0.097 4.097 21 C -0.150 4.150 22 C -0.038 4.038 23 C -0.163 4.163 24 C -0.010 4.010 25 O -0.310 6.310 26 C 0.031 3.969 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.021 0.979 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.170 0.830 40 H 0.154 0.846 41 H 0.181 0.819 42 H 0.083 0.917 43 H 0.123 0.877 44 H 0.084 0.916 45 H 0.135 0.865 46 H 0.103 0.897 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.549 10.859 2.993 11.810 hybrid contribution -0.448 -1.790 0.226 1.859 sum 3.101 9.069 3.219 10.111 Atomic orbital electron populations 1.21688 0.92430 1.02274 1.02686 1.21435 0.97565 0.96347 0.97413 1.21636 0.99182 0.95650 1.01707 1.21510 0.79335 1.00618 0.98553 1.48072 1.06832 1.26448 1.50236 1.19787 0.95093 0.83593 0.90649 1.21524 1.36349 0.92651 1.07871 0.92745 1.25608 0.94233 1.01835 0.95481 1.70030 1.36018 1.28850 1.19916 0.85556 0.78248 0.79489 0.78730 1.19615 1.20390 1.19992 1.18495 0.87192 0.81384 0.78522 1.90525 1.74902 1.34280 1.46004 1.19937 0.93009 0.94687 1.08814 1.22518 0.97036 0.98347 0.93613 1.21286 0.93065 0.99900 1.01888 1.21484 1.01451 0.90541 0.96226 1.20479 0.93225 0.97490 1.03844 1.19689 0.93301 0.94309 0.96543 1.21394 0.99999 0.91463 1.03435 1.22724 0.84513 0.99020 0.94761 1.88010 1.37839 1.43456 1.61728 1.21585 0.91931 0.80240 1.03135 0.91876 0.91145 0.92341 0.92831 0.95854 0.91569 0.92705 0.91070 0.90872 0.97909 0.92364 0.92100 0.82999 0.84562 0.81893 0.91679 0.87724 0.91626 0.86464 0.89661 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 9.19 71.98 0.66 -2.76 16 2 C -0.11 -3.60 3.12 -10.79 -0.03 -3.63 16 3 C -0.12 -4.05 8.01 71.98 0.58 -3.48 16 4 C 0.12 4.75 4.89 86.38 0.42 5.17 16 5 N -0.59 -25.96 2.33 -829.56 -1.93 -27.89 16 6 C 0.23 11.27 4.71 85.63 0.40 11.68 16 7 C -0.55 -28.04 7.15 25.60 0.18 -27.85 16 8 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 9 C 0.03 1.55 5.46 84.65 0.46 2.01 16 10 N -0.91 -48.77 13.29 21.45 0.28 -48.49 16 11 Si 0.95 40.75 29.54 68.60 2.03 42.78 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 13 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 14 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 15 C 0.55 24.30 5.94 86.79 0.52 24.81 16 16 O -0.57 -25.27 12.31 -3.90 -0.05 -25.31 16 17 C -0.16 -6.72 5.44 -20.04 -0.11 -6.83 16 18 C -0.10 -4.06 7.35 22.49 0.17 -3.89 16 19 C -0.14 -4.92 10.03 22.19 0.22 -4.70 16 20 C -0.08 -2.20 9.66 22.39 0.22 -1.98 16 21 C -0.15 -4.43 5.80 -19.88 -0.12 -4.54 16 22 C -0.04 -1.34 5.80 -19.60 -0.11 -1.45 16 23 C -0.13 -4.08 5.16 29.84 0.15 -3.92 16 24 C 0.07 1.63 6.85 71.97 0.49 2.12 16 25 O -0.39 -10.21 10.80 -148.98 -1.61 -11.82 16 26 C 0.11 2.38 6.66 71.23 0.47 2.86 16 27 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.97 7.96 -2.39 -0.02 1.95 16 31 H 0.02 0.86 6.98 -2.39 -0.02 0.84 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.05 1.80 7.93 -2.38 -0.02 1.78 16 34 H 0.07 2.82 7.75 -2.38 -0.02 2.81 16 35 H 0.07 2.82 7.27 -2.39 -0.02 2.80 16 36 H 0.00 0.16 7.96 -2.39 -0.02 0.14 16 37 H 0.06 2.99 4.03 -2.39 -0.01 2.98 16 38 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 39 H 0.15 7.26 4.07 -2.91 -0.01 7.25 16 40 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 41 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 42 H 0.06 2.22 8.14 -2.39 -0.02 2.21 16 43 H 0.10 3.73 5.55 -2.38 -0.01 3.72 16 44 H 0.07 1.46 8.07 -2.39 -0.02 1.44 16 45 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 47 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -60.79 365.77 4.26 -56.52 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.96 Total: 30.61 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 4.58 Total: -16.39 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -1.64 Total: -76.38 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -1.66 Total: -37.14 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -60.79 4.26 -56.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930901529.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.990 kcal (2) G-P(sol) polarization free energy of solvation -60.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds