Wall clock time and date at job start Tue Mar 31 2020 11:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46853 * 2 1 4 4 C 1.52994 * 109.46784 * 240.00312 * 2 1 3 5 5 C 1.52994 * 109.47284 * 120.00002 * 2 1 3 6 6 N 1.46496 * 109.47155 * 64.41526 * 5 2 1 7 7 C 1.46504 * 120.00244 * 267.52959 * 6 5 2 8 8 C 1.50700 * 109.46664 * 283.06169 * 7 6 5 9 9 H 1.07996 * 120.00752 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99539 * 179.97438 * 8 7 6 11 11 N 1.31519 * 120.00233 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 120.00147 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.46992 * 89.99618 * 12 10 8 14 14 H 1.48498 * 109.46896 * 210.00113 * 12 10 8 15 15 H 1.48501 * 109.46577 * 330.00099 * 12 10 8 16 16 C 1.34778 * 119.99832 * 87.52982 * 6 5 2 17 17 O 1.21592 * 120.00041 * 6.94362 * 16 6 5 18 18 C 1.47536 * 119.99857 * 186.94830 * 16 6 5 19 19 C 1.39535 * 120.05426 * 326.18312 * 18 16 6 20 20 C 1.37779 * 120.18267 * 179.97438 * 19 18 16 21 21 C 1.38643 * 119.97893 * 0.19489 * 20 19 18 22 22 C 1.37654 * 120.32321 * 0.02562 * 21 20 19 23 23 C 1.38880 * 120.86734 * 359.61483 * 22 21 20 24 24 O 1.35860 * 111.30219 * 181.04208 * 23 22 21 25 25 C 1.43784 * 109.23174 * 340.64700 * 24 23 22 26 26 C 1.51677 * 132.13959 * 179.08596 * 22 21 20 27 27 H 1.09005 * 109.46750 * 300.00066 * 1 2 3 28 28 H 1.09003 * 109.47176 * 59.99939 * 1 2 3 29 29 H 1.09001 * 109.47005 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46985 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47280 * 299.99998 * 3 2 1 32 32 H 1.09000 * 109.47539 * 59.99898 * 3 2 1 33 33 H 1.08996 * 109.47708 * 305.01712 * 4 2 1 34 34 H 1.09001 * 109.47539 * 65.02586 * 4 2 1 35 35 H 1.09007 * 109.46663 * 185.01825 * 4 2 1 36 36 H 1.09007 * 109.47052 * 304.41933 * 5 2 1 37 37 H 1.09006 * 109.47137 * 184.41817 * 5 2 1 38 38 H 1.08998 * 109.46894 * 43.06240 * 7 6 5 39 39 H 1.09002 * 109.46937 * 163.06599 * 7 6 5 40 40 H 0.97000 * 120.00397 * 179.97438 * 11 10 8 41 41 H 1.07996 * 119.90246 * 0.02562 * 19 18 16 42 42 H 1.08002 * 120.00612 * 180.21287 * 20 19 18 43 43 H 1.08005 * 119.83679 * 179.97438 * 21 20 19 44 44 H 1.08998 * 110.75846 * 269.56018 * 25 24 23 45 45 H 1.08998 * 110.90984 * 146.26800 * 25 24 23 46 46 H 1.08999 * 110.94381 * 313.74724 * 26 22 21 47 47 H 1.09004 * 110.93463 * 77.39936 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2492 6 7 1.6406 -2.1297 1.1972 7 6 0.3875 -2.5593 1.8230 8 6 0.5735 -2.6391 3.3164 9 1 1.5295 -2.3948 3.7554 10 6 -0.4769 -3.0241 4.1222 11 7 -1.6410 -3.3222 3.5876 12 14 -0.2468 -3.1224 5.9734 13 1 -0.5833 -1.8114 6.5844 14 1 -1.1399 -4.1711 6.5282 15 1 1.1660 -3.4628 6.2791 16 6 2.4258 -3.0303 0.5737 17 8 3.5226 -2.7010 0.1651 18 6 1.9543 -4.4158 0.3867 19 6 1.1424 -5.0138 1.3511 20 6 0.7002 -6.3073 1.1790 21 6 1.0654 -7.0194 0.0468 22 6 1.8698 -6.4407 -0.9087 23 6 2.3232 -5.1361 -0.7635 24 8 3.0802 -4.7556 -1.8255 25 6 3.5423 -5.9259 -2.5214 26 6 2.4378 -6.9647 -2.2139 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6052 -1.7196 -1.2955 34 1 1.7520 -0.1580 -2.1370 35 1 3.1263 -0.7997 -1.2054 36 1 1.6135 -0.2551 2.1375 37 1 3.1273 -0.6531 1.2896 38 1 -0.3988 -1.8404 1.5927 39 1 0.1071 -3.5401 1.4389 40 1 -2.3799 -3.5934 4.1545 41 1 0.8592 -4.4609 2.2345 42 1 0.0691 -6.7662 1.9256 43 1 0.7178 -8.0334 -0.0856 44 1 4.5033 -6.2557 -2.1268 45 1 3.6098 -5.7399 -3.5932 46 1 2.8641 -7.9592 -2.0819 47 1 1.6779 -6.9692 -2.9954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932061089.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:32 Heat of formation + Delta-G solvation = -29.092234 kcal Electronic energy + Delta-G solvation = -28378.585824 eV Core-core repulsion = 24720.404570 eV Total energy + Delta-G solvation = -3658.181254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.91428 -39.36685 -37.07858 -36.33726 -34.46646 -32.44114 -32.29220 -29.85090 -29.09091 -27.63227 -26.86462 -26.63439 -25.78097 -23.60609 -22.82274 -22.10043 -21.42893 -19.20238 -18.03271 -17.09933 -16.69477 -16.42483 -16.23420 -15.58540 -15.15467 -14.84050 -14.73272 -14.41523 -13.89365 -13.49118 -13.28110 -13.16458 -12.94105 -12.79694 -12.65065 -12.38047 -12.11013 -11.99678 -11.74837 -11.69919 -11.45320 -11.26677 -11.13394 -11.06974 -10.95702 -10.86302 -10.60777 -10.56136 -10.35018 -10.22875 -10.12198 -9.80986 -9.65314 -8.93839 -8.69279 -8.21040 -7.77188 -7.53717 -6.25512 -4.34494 1.44643 1.76300 3.19008 3.26956 3.30718 3.46630 3.62993 3.95699 4.23030 4.36364 4.57330 4.74346 5.04366 5.05335 5.14709 5.29185 5.30484 5.43053 5.45871 5.50625 5.56045 5.74877 5.79607 5.89266 5.97030 5.98271 6.02653 6.07812 6.20942 6.27422 6.28662 6.39425 6.41493 6.49703 6.59016 6.65122 6.66519 6.72848 6.76459 6.91328 6.95303 6.98777 7.17000 7.26550 7.51650 7.61553 7.70622 7.98568 8.43154 8.75911 9.11591 9.34160 10.78764 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009739 B = 0.006522 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.439171 B = 4292.239704 C = 6497.968072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.085 4.085 3 C -0.135 4.135 4 C -0.130 4.130 5 C 0.133 3.867 6 N -0.586 5.586 7 C 0.203 3.797 8 C -0.542 4.542 9 H 0.064 0.936 10 C 0.068 3.932 11 N -0.883 5.883 12 Si 0.894 3.106 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.271 1.271 16 C 0.561 3.439 17 O -0.558 6.558 18 C -0.151 4.151 19 C -0.053 4.053 20 C -0.163 4.163 21 C -0.054 4.054 22 C -0.207 4.207 23 C 0.154 3.846 24 O -0.287 6.287 25 C 0.049 3.951 26 C -0.104 4.104 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.039 0.961 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.040 0.960 39 H 0.066 0.934 40 H 0.267 0.733 41 H 0.197 0.803 42 H 0.130 0.870 43 H 0.119 0.881 44 H 0.074 0.926 45 H 0.102 0.898 46 H 0.086 0.914 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.808 -3.392 -9.018 10.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.086 4.086 3 C -0.193 4.193 4 C -0.187 4.187 5 C 0.009 3.991 6 N -0.315 5.315 7 C 0.083 3.917 8 C -0.580 4.580 9 H 0.082 0.918 10 C -0.136 4.136 11 N -0.520 5.520 12 Si 0.721 3.279 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.196 1.196 16 C 0.350 3.650 17 O -0.439 6.439 18 C -0.155 4.155 19 C -0.070 4.070 20 C -0.181 4.181 21 C -0.072 4.072 22 C -0.208 4.208 23 C 0.107 3.893 24 O -0.200 6.200 25 C -0.027 4.027 26 C -0.141 4.141 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.213 0.787 42 H 0.148 0.852 43 H 0.137 0.863 44 H 0.092 0.908 45 H 0.120 0.880 46 H 0.105 0.895 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.239 -3.037 -9.262 10.629 hybrid contribution -0.226 -0.324 1.014 1.088 sum 4.013 -3.361 -8.248 9.769 Atomic orbital electron populations 1.21957 0.94491 1.02611 1.00659 1.20964 0.96084 0.95040 0.96505 1.21777 1.00747 0.95454 1.01283 1.21822 1.01704 0.99625 0.95578 1.21330 0.99811 0.81246 0.96689 1.47957 1.23736 1.06744 1.53108 1.20388 0.80738 0.98107 0.92424 1.21501 0.98063 1.47020 0.91438 0.91768 1.24969 0.94843 0.94696 0.99082 1.69934 1.01863 1.44294 1.35916 0.86539 0.78407 0.78039 0.84867 1.20427 1.20955 1.19613 1.17980 0.84440 0.84653 0.77950 1.90681 1.20769 1.80343 1.52063 1.19317 1.05984 0.96103 0.94112 1.22822 0.89686 0.94446 1.00059 1.21057 1.03443 0.95040 0.98535 1.20402 0.95114 0.99173 0.92505 1.20577 1.05751 0.95934 0.98515 1.19421 0.90435 0.92279 0.87195 1.86899 1.64713 1.31086 1.37328 1.23805 0.97240 0.83792 0.97838 1.21709 0.97806 0.99709 0.94842 0.92664 0.93832 0.91611 0.92849 0.93023 0.92740 0.93096 0.94172 0.91904 0.90204 0.91170 0.94190 0.91724 0.92305 0.78676 0.85202 0.86267 0.90795 0.88005 0.89541 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 7.58 37.16 0.28 -2.09 16 2 C -0.08 -1.44 0.85 -154.51 -0.13 -1.57 16 3 C -0.13 -1.89 8.47 37.16 0.31 -1.58 16 4 C -0.13 -2.32 7.08 37.15 0.26 -2.06 16 5 C 0.13 2.58 4.54 -4.05 -0.02 2.56 16 6 N -0.59 -12.68 2.03 -176.29 -0.36 -13.04 16 7 C 0.20 4.70 4.06 -5.19 -0.02 4.68 16 8 C -0.54 -13.46 7.53 -34.44 -0.26 -13.72 16 9 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 10 C 0.07 1.71 5.45 -17.82 -0.10 1.61 16 11 N -0.88 -22.86 13.29 55.43 0.74 -22.12 16 12 Si 0.89 19.72 29.54 -169.99 -5.02 14.69 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 16 C 0.56 12.65 5.52 -12.47 -0.07 12.59 16 17 O -0.56 -13.45 14.33 2.53 0.04 -13.42 16 18 C -0.15 -3.21 5.54 -104.72 -0.58 -3.79 16 19 C -0.05 -1.08 7.39 -39.27 -0.29 -1.37 16 20 C -0.16 -2.83 10.05 -39.60 -0.40 -3.23 16 21 C -0.05 -0.82 10.02 -39.65 -0.40 -1.22 16 22 C -0.21 -3.30 6.27 -104.12 -0.65 -3.96 16 23 C 0.15 2.96 6.69 -38.44 -0.26 2.70 16 24 O -0.29 -5.30 10.65 -22.06 -0.23 -5.54 16 25 C 0.05 0.61 8.01 38.06 0.30 0.92 16 26 C -0.10 -1.22 7.12 -26.50 -0.19 -1.41 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 1.25 5.84 -51.93 -0.30 0.95 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 1.02 6.55 -51.93 -0.34 0.68 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 1.20 7.18 -51.93 -0.37 0.83 16 36 H 0.08 1.55 7.96 -51.93 -0.41 1.14 16 37 H 0.07 1.39 7.41 -51.93 -0.38 1.01 16 38 H 0.04 0.97 5.79 -51.93 -0.30 0.67 16 39 H 0.07 1.55 3.84 -52.19 -0.20 1.35 16 40 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 41 H 0.20 4.46 3.75 -52.49 -0.20 4.26 16 42 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 43 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 365.31 15.07 5.51 5.51 Total: -1.00 -28.74 365.31 -8.66 -37.41 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -7.13 Total: 7.44 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -2.20 Total: -10.93 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.38 Total: -35.16 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.20 Total: -18.95 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.74 -8.66 -37.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932061089.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.313 kcal (2) G-P(sol) polarization free energy of solvation -28.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds